Wall clock time and date at job start Tue Mar 31 2020 16:07:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35934 * 116.99772 * 2 1 4 4 C 1.38748 * 119.98934 * 180.02562 * 3 2 1 5 5 C 1.38061 * 120.01096 * 179.97438 * 4 3 2 6 6 C 1.38832 * 119.98892 * 359.97438 * 5 4 3 7 7 N 1.40305 * 120.00999 * 179.97438 * 6 5 4 8 8 N 1.40204 * 126.60351 * 222.02116 * 7 6 5 9 9 N 1.28760 * 108.40477 * 179.97438 * 8 7 6 10 10 C 1.34446 * 109.56778 * 359.97438 * 9 8 7 11 11 C 1.47359 * 125.77840 * 179.97438 * 10 9 8 12 12 O 1.21524 * 119.99755 * 180.02562 * 11 10 9 13 13 O 1.34753 * 120.00098 * 0.02562 * 11 10 9 14 14 C 1.45201 * 116.99997 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47197 * 179.97438 * 14 13 11 16 16 C 1.50706 * 109.46974 * 180.02562 * 15 14 13 17 17 H 1.07998 * 120.00422 * 359.97438 * 16 15 14 18 18 C 1.37874 * 119.99582 * 180.02562 * 16 15 14 19 19 N 1.31517 * 119.99825 * 179.97438 * 18 16 15 20 20 Si 1.86796 * 120.00354 * 359.97438 * 18 16 15 21 21 H 1.48500 * 109.47275 * 90.00244 * 20 18 16 22 22 H 1.48506 * 109.47442 * 210.00179 * 20 18 16 23 23 H 1.48500 * 109.47247 * 330.00538 * 20 18 16 24 24 C 1.35019 * 126.60159 * 42.01739 * 7 6 5 25 25 C 1.50703 * 126.60369 * 0.25773 * 24 7 6 26 26 C 1.38831 * 119.97997 * 0.25609 * 6 5 4 27 27 C 1.38060 * 119.98911 * 359.46320 * 26 6 5 28 28 H 1.08998 * 109.47375 * 60.00083 * 1 2 3 29 29 H 1.09001 * 109.47244 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47239 * 300.00488 * 1 2 3 31 31 H 1.08005 * 119.99493 * 359.97183 * 4 3 2 32 32 H 1.08004 * 120.00368 * 180.02562 * 5 4 3 33 33 H 1.09006 * 109.47451 * 300.00609 * 14 13 11 34 34 H 1.09007 * 109.46941 * 59.99887 * 14 13 11 35 35 H 1.08999 * 109.46897 * 300.00268 * 15 14 13 36 36 H 1.08994 * 109.47383 * 60.00247 * 15 14 13 37 37 H 0.96997 * 119.99891 * 179.97438 * 19 18 16 38 38 H 1.08994 * 109.47730 * 264.35357 * 25 24 7 39 39 H 1.09006 * 109.46982 * 24.35712 * 25 24 7 40 40 H 1.08999 * 109.46987 * 144.34908 * 25 24 7 41 41 H 1.08001 * 120.00036 * 179.74880 * 26 6 5 42 42 H 1.08004 * 119.99345 * 180.28203 * 27 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0461 1.2112 0.0000 4 6 3.4317 1.2836 -0.0005 5 6 4.0589 2.5135 -0.0011 6 6 3.3029 3.6780 -0.0016 7 7 3.9398 4.9281 -0.0016 8 7 3.5740 6.0528 0.7515 9 7 4.3959 7.0068 0.4828 10 6 5.3011 6.5817 -0.4158 11 6 6.4046 7.3839 -0.9727 12 8 7.1648 6.8917 -1.7831 13 8 6.5708 8.6632 -0.5834 14 6 7.6791 9.3930 -1.1730 15 6 7.7067 10.8171 -0.6144 16 6 8.8566 11.5746 -1.2268 17 1 9.5033 11.0889 -1.9424 18 6 9.0836 12.8876 -0.8726 19 7 10.0874 13.5486 -1.4066 20 14 7.9655 13.7277 0.3657 21 1 8.5031 13.5253 1.7352 22 1 7.9018 15.1814 0.0689 23 1 6.6027 13.1443 0.2778 24 6 5.0231 5.2797 -0.7268 25 6 5.7776 4.4066 -1.6961 26 6 1.9165 3.6051 0.0038 27 6 1.2902 2.3747 -0.0016 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 4.0197 0.3777 -0.0005 32 1 5.1374 2.5698 -0.0019 33 1 8.6152 8.8893 -0.9316 34 1 7.5550 9.4299 -2.2553 35 1 6.7706 11.3204 -0.8562 36 1 7.8305 10.7806 0.4679 37 1 10.2469 14.4725 -1.1577 38 1 6.6328 3.9576 -1.1910 39 1 5.1193 3.6200 -2.0649 40 1 6.1265 5.0107 -2.5336 41 1 1.3281 4.5107 0.0074 42 1 0.2116 2.3179 -0.0020 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000193327071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:07:37 Heat of formation + Delta-G solvation = 3.025965 kcal Electronic energy + Delta-G solvation = -26575.727528 eV Core-core repulsion = 22524.027967 eV Total energy + Delta-G solvation = -4051.699561 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.72040 -40.79094 -39.73412 -38.35201 -36.24880 -34.77035 -33.25544 -32.85217 -31.78661 -30.76874 -29.86454 -28.43176 -27.77191 -25.45500 -24.33036 -23.70985 -23.06070 -21.36641 -20.64010 -20.47267 -18.96435 -18.60114 -17.18682 -17.05659 -16.58597 -16.39152 -16.27024 -16.05059 -15.61213 -15.30036 -14.64348 -14.49299 -14.28805 -14.15677 -13.87316 -13.54117 -13.39850 -13.31686 -13.20700 -12.94898 -12.65043 -12.44298 -12.18111 -12.05045 -11.69482 -11.48812 -11.34512 -11.23782 -10.81671 -10.67804 -10.62358 -10.03423 -9.88903 -9.81703 -9.68075 -9.44582 -9.30111 -8.72109 -8.57351 -6.08657 -4.09590 0.15435 0.55040 1.08833 1.49976 1.61607 2.55798 2.86516 3.03648 3.10093 3.33774 3.40765 3.47566 3.88769 4.00506 4.08164 4.25858 4.31236 4.44197 4.47352 4.52230 4.54673 4.64378 4.73467 4.86038 4.95474 5.12812 5.15340 5.25392 5.25496 5.31644 5.47191 5.54063 5.62478 5.73034 5.82152 5.98802 6.01130 6.30904 6.49399 6.63810 6.74219 7.22065 7.28485 7.64687 7.70250 8.10718 8.43768 8.92743 9.51408 11.03744 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.036359 B = 0.001930 C = 0.001853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 769.910710 B =14502.879494 C =15107.632692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.312 6.312 3 C 0.141 3.859 4 C -0.133 4.133 5 C -0.071 4.071 6 C 0.089 3.911 7 N -0.314 5.314 8 N -0.061 5.061 9 N -0.169 5.169 10 C -0.080 4.080 11 C 0.551 3.449 12 O -0.508 6.508 13 O -0.340 6.340 14 C 0.083 3.917 15 C -0.011 4.011 16 C -0.527 4.527 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.898 5.898 20 Si 0.880 3.120 21 H -0.275 1.275 22 H -0.286 1.286 23 H -0.262 1.262 24 C 0.132 3.868 25 C -0.099 4.099 26 C -0.052 4.052 27 C -0.193 4.193 28 H 0.059 0.941 29 H 0.104 0.896 30 H 0.059 0.941 31 H 0.147 0.853 32 H 0.144 0.856 33 H 0.067 0.933 34 H 0.068 0.932 35 H 0.030 0.970 36 H 0.025 0.975 37 H 0.265 0.735 38 H 0.098 0.902 39 H 0.080 0.920 40 H 0.113 0.887 41 H 0.141 0.859 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.467 -31.497 1.930 37.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.225 6.225 3 C 0.095 3.905 4 C -0.152 4.152 5 C -0.091 4.091 6 C -0.002 4.002 7 N -0.094 5.094 8 N -0.040 5.040 9 N -0.043 5.043 10 C -0.216 4.216 11 C 0.393 3.607 12 O -0.396 6.396 13 O -0.255 6.255 14 C 0.010 3.990 15 C -0.048 4.048 16 C -0.564 4.564 17 H 0.094 0.906 18 C -0.129 4.129 19 N -0.536 5.536 20 Si 0.706 3.294 21 H -0.200 1.200 22 H -0.212 1.212 23 H -0.186 1.186 24 C -0.003 4.003 25 C -0.158 4.158 26 C -0.071 4.071 27 C -0.212 4.212 28 H 0.078 0.922 29 H 0.122 0.878 30 H 0.078 0.922 31 H 0.164 0.836 32 H 0.161 0.839 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.048 0.952 36 H 0.044 0.956 37 H 0.075 0.925 38 H 0.117 0.883 39 H 0.098 0.902 40 H 0.131 0.869 41 H 0.159 0.841 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -21.014 -30.988 2.706 37.539 hybrid contribution -0.093 0.346 0.000 0.358 sum -21.107 -30.642 2.706 37.306 Atomic orbital electron populations 1.23170 0.77671 1.04541 1.01778 1.86116 1.21978 1.26343 1.88021 1.19168 0.92391 0.84481 0.94475 1.20292 0.91454 0.98063 1.05441 1.20954 1.00621 0.89845 0.97720 1.17354 0.91887 0.80911 1.10013 1.47472 1.20943 1.11003 1.29975 1.82195 1.19481 0.87355 1.14933 1.74804 1.00320 1.20407 1.08770 1.20177 1.02250 0.92861 1.06317 1.19263 0.81473 0.81454 0.78489 1.90821 1.44014 1.72444 1.32346 1.86641 1.51769 1.22671 1.64369 1.23485 0.84967 0.92837 0.97691 1.19640 0.98682 0.89196 0.97286 1.20837 1.12176 0.96858 1.26562 0.90598 1.24919 0.95044 0.97014 0.95969 1.69896 1.29340 1.10848 1.43497 0.86770 0.82169 0.78621 0.81814 1.20040 1.21210 1.18599 1.21936 0.88971 0.95031 0.94344 1.20850 0.99004 0.98492 0.97425 1.20844 0.91933 0.98711 0.95654 1.21180 1.00803 0.91161 1.08087 0.92209 0.87774 0.92202 0.83573 0.83873 0.91419 0.91404 0.95213 0.95639 0.92477 0.88349 0.90158 0.86882 0.84106 0.84027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.06 9.81 101.05 0.99 1.05 16 2 O -0.31 -1.79 10.50 -19.53 -0.21 -2.00 16 3 C 0.14 0.87 6.69 -39.20 -0.26 0.61 16 4 C -0.13 -0.77 9.98 -39.46 -0.39 -1.17 16 5 C -0.07 -0.48 8.36 -39.43 -0.33 -0.81 16 6 C 0.09 0.80 6.13 -83.54 -0.51 0.28 16 7 N -0.31 -3.74 3.71 -6.69 -0.02 -3.77 16 8 N -0.06 -0.91 13.64 60.35 0.82 -0.09 16 9 N -0.17 -2.88 12.39 32.84 0.41 -2.48 16 10 C -0.08 -1.28 7.02 -83.56 -0.59 -1.86 16 11 C 0.55 10.06 7.96 34.44 0.27 10.33 16 12 O -0.51 -9.33 14.65 -19.28 -0.28 -9.62 16 13 O -0.34 -7.03 10.23 -40.64 -0.42 -7.45 16 14 C 0.08 1.81 5.41 37.16 0.20 2.01 16 15 C -0.01 -0.26 4.42 -27.88 -0.12 -0.39 16 16 C -0.53 -15.18 9.66 -34.44 -0.33 -15.51 16 17 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 18 C 0.07 2.13 5.47 -17.82 -0.10 2.04 16 19 N -0.90 -27.66 13.96 55.43 0.77 -26.89 16 20 Si 0.88 21.99 27.47 -169.99 -4.67 17.32 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 23 H -0.26 -6.37 6.54 56.52 0.37 -6.00 16 24 C 0.13 1.63 6.84 -81.74 -0.56 1.07 16 25 C -0.10 -0.85 8.18 36.01 0.29 -0.56 16 26 C -0.05 -0.39 9.85 -39.43 -0.39 -0.78 16 27 C -0.19 -1.11 9.03 -39.46 -0.36 -1.46 16 28 H 0.06 0.09 7.66 -51.93 -0.40 -0.31 16 29 H 0.10 0.08 8.14 -51.93 -0.42 -0.34 16 30 H 0.06 0.10 7.66 -51.93 -0.40 -0.30 16 31 H 0.15 0.59 8.06 -52.48 -0.42 0.16 16 32 H 0.14 0.76 7.02 -52.48 -0.37 0.39 16 33 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 34 H 0.07 1.46 8.14 -51.92 -0.42 1.03 16 35 H 0.03 0.74 7.20 -51.93 -0.37 0.37 16 36 H 0.03 0.63 7.57 -51.93 -0.39 0.23 16 37 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 38 H 0.10 0.69 8.13 -51.93 -0.42 0.27 16 39 H 0.08 0.49 6.97 -51.93 -0.36 0.13 16 40 H 0.11 1.12 6.75 -51.93 -0.35 0.77 16 41 H 0.14 1.04 8.06 -52.49 -0.42 0.62 16 42 H 0.14 0.48 6.29 -52.48 -0.33 0.15 16 LS Contribution 364.19 15.07 5.49 5.49 Total: -1.00 -34.82 364.19 -5.38 -40.20 By element: Atomic # 1 Polarization: -0.49 SS G_CDS: -5.09 Total: -5.59 kcal Atomic # 6 Polarization: -2.97 SS G_CDS: -2.18 Total: -5.15 kcal Atomic # 7 Polarization: -35.19 SS G_CDS: 1.98 Total: -33.22 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.90 Total: -19.06 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -4.67 Total: 17.32 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.82 -5.38 -40.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000193327071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.227 kcal (2) G-P(sol) polarization free energy of solvation -34.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.380 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds