Wall clock time and date at job start Tue Mar 31 2020 15:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38287 * 126.31904 * 2 1 4 4 C 1.46962 * 126.43877 * 359.97438 * 3 2 1 5 5 C 1.35046 * 119.99786 * 136.59983 * 4 3 2 6 6 C 1.41831 * 119.99928 * 350.23420 * 5 4 3 7 7 O 1.21735 * 120.00030 * 353.33987 * 6 5 4 8 8 N 1.34774 * 120.00166 * 173.34761 * 6 5 4 9 9 C 1.46498 * 120.00293 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.46871 * 269.99502 * 9 8 6 11 11 H 1.07996 * 120.00373 * 359.97438 * 10 9 8 12 12 C 1.37886 * 119.99757 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99858 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99807 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47389 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46953 * 120.00356 * 14 12 10 17 17 H 1.48500 * 109.47332 * 240.00106 * 14 12 10 18 18 C 1.46505 * 119.99971 * 359.97438 * 8 6 5 19 19 C 1.53002 * 109.47136 * 270.00427 * 18 8 6 20 20 F 1.39904 * 109.47216 * 60.00025 * 19 18 8 21 21 F 1.39902 * 109.46988 * 179.97438 * 19 18 8 22 22 F 1.39894 * 109.47129 * 299.99955 * 19 18 8 23 23 C 1.41436 * 107.11662 * 179.73597 * 3 2 1 24 24 N 1.30447 * 108.03761 * 0.23326 * 23 3 2 25 25 N 1.34399 * 126.31754 * 180.13841 * 2 1 3 26 26 C 1.46501 * 125.74522 * 0.02709 * 25 2 1 27 27 H 1.08991 * 109.47258 * 90.00289 * 1 2 3 28 28 H 1.09001 * 109.47298 * 210.00958 * 1 2 3 29 29 H 1.09000 * 109.47122 * 330.00453 * 1 2 3 30 30 H 1.07994 * 120.00261 * 316.59558 * 4 3 2 31 31 H 1.07998 * 120.00225 * 170.23058 * 5 4 3 32 32 H 1.08997 * 109.46927 * 29.99712 * 9 8 6 33 33 H 1.09003 * 109.46936 * 149.99831 * 9 8 6 34 34 H 0.97002 * 119.99417 * 180.02562 * 13 12 10 35 35 H 1.09006 * 109.46965 * 30.00262 * 18 8 6 36 36 H 1.08998 * 109.47157 * 150.00239 * 18 8 6 37 37 H 1.08004 * 125.98017 * 180.26480 * 23 3 2 38 38 H 1.08999 * 109.46803 * 270.31443 * 26 25 2 39 39 H 1.09001 * 109.46833 * 30.31052 * 26 25 2 40 40 H 1.09001 * 109.47674 * 150.30963 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3260 1.1142 0.0000 4 6 1.8904 2.5178 -0.0005 5 6 2.5016 3.4147 0.8030 6 6 3.4163 2.9725 1.7927 7 8 3.5599 1.7816 2.0001 8 7 4.1264 3.8708 2.5035 9 6 5.0708 3.4141 3.5261 10 6 4.3615 3.3032 4.8512 11 1 3.3124 3.5488 4.9244 12 6 5.0522 2.8882 5.9701 13 7 6.3299 2.5897 5.8811 14 14 4.1732 2.7514 7.6127 15 1 2.7502 3.1419 7.4467 16 1 4.2481 1.3502 8.0989 17 1 4.8226 3.6527 8.5982 18 6 3.9538 5.3040 2.2536 19 6 4.9425 5.7567 1.1772 20 9 4.7043 5.0454 -0.0037 21 9 4.7773 7.1252 0.9382 22 9 6.2495 5.5133 1.6126 23 6 3.6617 0.6490 0.0062 24 7 3.6352 -0.6552 0.0046 25 7 2.3030 -1.0829 -0.0026 26 6 1.8518 -2.4767 -0.0065 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5140 29 1 -0.3633 0.8900 0.5138 30 1 1.0816 2.8320 -0.6435 31 1 2.2939 4.4687 0.6921 32 1 5.4684 2.4392 3.2440 33 1 5.8888 4.1296 3.6106 34 1 6.8155 2.2973 6.6682 35 1 2.9354 5.4937 1.9144 36 1 4.1394 5.8582 3.1737 37 1 4.5483 1.2657 0.0119 38 1 1.7341 -2.8234 1.0201 39 1 0.8960 -2.5477 -0.5258 40 1 2.5894 -3.0960 -0.5169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000255694038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:20 Heat of formation + Delta-G solvation = -77.065216 kcal Electronic energy + Delta-G solvation = -29462.339620 eV Core-core repulsion = 24865.310304 eV Total energy + Delta-G solvation = -4597.029316 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.73469 -47.29247 -47.17114 -40.92963 -39.20625 -35.41491 -33.76476 -33.02925 -32.67667 -31.02720 -29.19792 -27.57617 -26.60887 -26.15378 -23.80195 -23.19369 -21.87800 -20.28580 -19.55156 -18.52762 -18.20680 -17.94347 -17.14589 -16.67842 -16.12675 -16.02117 -15.41708 -15.13384 -14.36441 -14.31348 -14.20600 -14.07079 -13.87629 -13.66591 -13.53921 -13.40343 -13.34137 -13.27626 -13.02449 -12.96151 -12.52542 -12.37562 -12.33656 -12.18926 -11.99291 -11.81810 -11.55187 -11.21372 -10.92843 -10.61252 -10.32130 -10.20169 -9.69161 -9.60214 -9.05933 -8.74696 -8.44713 -7.83785 -7.46854 -6.05372 -4.10346 1.33981 2.24548 2.77008 3.05827 3.28816 3.36396 3.39197 3.42385 3.69625 3.93007 4.31513 4.35365 4.45347 4.62796 4.67782 4.74108 5.02329 5.12927 5.14458 5.21798 5.29670 5.31775 5.36277 5.40920 5.53876 5.65558 5.70793 5.73102 6.07890 6.13034 6.49165 6.60390 7.01309 7.08229 7.27996 7.39594 7.46215 7.90260 8.10700 8.19556 8.24557 8.88433 9.04057 9.54559 11.02877 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.008747 B = 0.005195 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.437975 B = 5388.944263 C = 7601.293181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.094 3.906 3 C -0.217 4.217 4 C 0.024 3.976 5 C -0.231 4.231 6 C 0.541 3.459 7 O -0.511 6.511 8 N -0.595 5.595 9 C 0.243 3.757 10 C -0.527 4.527 11 H 0.058 0.942 12 C 0.062 3.938 13 N -0.891 5.891 14 Si 0.897 3.103 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.283 1.283 18 C 0.075 3.925 19 C 0.427 3.573 20 F -0.184 7.184 21 F -0.191 7.191 22 F -0.176 7.176 23 C 0.138 3.862 24 N -0.312 5.312 25 N -0.377 5.377 26 C 0.104 3.896 27 H 0.077 0.923 28 H 0.068 0.932 29 H 0.085 0.915 30 H 0.125 0.875 31 H 0.123 0.877 32 H 0.048 0.952 33 H 0.038 0.962 34 H 0.263 0.737 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.175 0.825 38 H 0.071 0.929 39 H 0.081 0.919 40 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.778 0.947 -14.244 18.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.034 4.034 3 C -0.229 4.229 4 C 0.003 3.997 5 C -0.252 4.252 6 C 0.332 3.668 7 O -0.388 6.388 8 N -0.326 5.326 9 C 0.125 3.875 10 C -0.566 4.566 11 H 0.077 0.923 12 C -0.140 4.140 13 N -0.530 5.530 14 Si 0.725 3.275 15 H -0.198 1.198 16 H -0.210 1.210 17 H -0.209 1.209 18 C -0.054 4.054 19 C 0.371 3.629 20 F -0.166 7.166 21 F -0.172 7.172 22 F -0.157 7.157 23 C -0.049 4.049 24 N -0.131 5.131 25 N -0.158 5.158 26 C -0.038 4.038 27 H 0.096 0.904 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.142 0.858 31 H 0.141 0.859 32 H 0.066 0.934 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.130 0.870 36 H 0.143 0.857 37 H 0.192 0.808 38 H 0.089 0.911 39 H 0.099 0.901 40 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -10.828 -1.029 -14.004 17.732 hybrid contribution -0.593 0.947 1.012 1.508 sum -11.421 -0.082 -12.992 17.299 Atomic orbital electron populations 1.20412 0.87584 1.03920 1.02803 1.21362 0.93847 0.87183 1.01035 1.18944 0.92521 0.92348 1.19045 1.21497 0.94546 0.90211 0.93470 1.22157 1.03472 0.99877 0.99708 1.17147 0.81180 0.86334 0.82126 1.90858 1.65303 1.15203 1.67454 1.48217 1.43162 1.02496 1.38771 1.19431 0.86997 0.96863 0.84234 1.21430 0.96532 1.45747 0.92923 0.92329 1.24929 0.94851 0.95093 0.99144 1.69948 1.07944 1.45191 1.29933 0.86456 0.79700 0.77773 0.83551 1.19824 1.20970 1.20926 1.22599 0.97759 0.87123 0.97870 1.21743 0.83059 0.74485 0.83660 1.93169 1.94274 1.78378 1.50733 1.93147 1.95532 1.33361 1.95186 1.93213 1.39328 1.93901 1.89292 1.23658 0.97026 0.91053 0.93174 1.77108 0.95507 1.13673 1.26855 1.48001 1.04205 1.05481 1.58122 1.21731 1.00409 0.78521 1.03102 0.90396 0.91258 0.89655 0.85774 0.85928 0.93359 0.94423 0.92730 0.86970 0.85667 0.80832 0.91092 0.90059 0.89511 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 9.71 36.00 0.35 -0.47 16 2 C 0.09 1.34 7.02 -81.45 -0.57 0.77 16 3 C -0.22 -3.53 4.66 -105.13 -0.49 -4.02 16 4 C 0.02 0.33 9.77 -37.18 -0.36 -0.03 16 5 C -0.23 -3.49 7.88 -39.34 -0.31 -3.80 16 6 C 0.54 10.89 6.69 -14.89 -0.10 10.79 16 7 O -0.51 -12.26 11.38 5.16 0.06 -12.20 16 8 N -0.59 -12.13 2.37 -178.40 -0.42 -12.56 16 9 C 0.24 6.23 4.96 -5.19 -0.03 6.21 16 10 C -0.53 -14.66 9.39 -34.44 -0.32 -14.98 16 11 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 14 Si 0.90 21.80 29.54 -169.99 -5.02 16.78 16 15 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 16 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 18 C 0.07 1.14 5.26 -4.04 -0.02 1.12 16 19 C 0.43 6.51 3.29 37.16 0.12 6.64 16 20 F -0.18 -2.83 15.50 2.25 0.03 -2.79 16 21 F -0.19 -2.62 17.32 2.25 0.04 -2.58 16 22 F -0.18 -3.18 16.23 2.25 0.04 -3.14 16 23 C 0.14 2.60 8.86 -16.92 -0.15 2.45 16 24 N -0.31 -5.91 12.49 30.89 0.39 -5.53 16 25 N -0.38 -5.77 3.98 -63.24 -0.25 -6.02 16 26 C 0.10 1.05 11.06 59.85 0.66 1.71 16 27 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.55 7.72 -51.93 -0.40 0.15 16 29 H 0.08 0.76 7.97 -51.93 -0.41 0.35 16 30 H 0.12 1.19 8.06 -52.49 -0.42 0.77 16 31 H 0.12 1.46 5.87 -52.49 -0.31 1.16 16 32 H 0.05 1.42 7.42 -51.93 -0.39 1.03 16 33 H 0.04 0.99 7.25 -51.93 -0.38 0.61 16 34 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.11 1.32 6.01 -51.93 -0.31 1.01 16 36 H 0.13 1.87 8.07 -51.93 -0.42 1.45 16 37 H 0.17 3.33 7.55 -52.48 -0.40 2.93 16 38 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.08 0.55 7.65 -51.93 -0.40 0.15 16 40 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 LS Contribution 351.53 15.07 5.30 5.30 Total: -1.00 -35.77 351.53 -5.07 -40.84 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.64 Total: -0.34 kcal Atomic # 6 Polarization: 9.37 SS G_CDS: -1.32 Total: 8.05 kcal Atomic # 7 Polarization: -50.35 SS G_CDS: 0.45 Total: -49.90 kcal Atomic # 8 Polarization: -12.26 SS G_CDS: 0.06 Total: -12.20 kcal Atomic # 9 Polarization: -8.63 SS G_CDS: 0.11 Total: -8.52 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -35.77 -5.07 -40.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255694038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.222 kcal (2) G-P(sol) polarization free energy of solvation -35.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds