Wall clock time and date at job start Tue Mar 31 2020 15:55:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38287 * 126.31904 * 2 1 4 4 C 1.46962 * 126.43877 * 359.97438 * 3 2 1 5 5 C 1.35046 * 119.99786 * 136.59983 * 4 3 2 6 6 C 1.41831 * 119.99928 * 350.23420 * 5 4 3 7 7 O 1.21735 * 120.00030 * 353.33987 * 6 5 4 8 8 N 1.34774 * 120.00166 * 173.34761 * 6 5 4 9 9 C 1.46498 * 120.00293 * 179.97438 * 8 6 5 10 10 C 1.50700 * 109.46871 * 269.99502 * 9 8 6 11 11 H 1.07996 * 120.00373 * 359.97438 * 10 9 8 12 12 C 1.37886 * 119.99757 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99858 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99807 * 179.97438 * 12 10 9 15 15 H 1.48497 * 109.47389 * 0.02562 * 14 12 10 16 16 H 1.48501 * 109.46953 * 120.00356 * 14 12 10 17 17 H 1.48500 * 109.47332 * 240.00106 * 14 12 10 18 18 C 1.46505 * 119.99971 * 359.97438 * 8 6 5 19 19 C 1.53002 * 109.47136 * 270.00427 * 18 8 6 20 20 F 1.39904 * 109.47216 * 60.00025 * 19 18 8 21 21 F 1.39902 * 109.46988 * 179.97438 * 19 18 8 22 22 F 1.39894 * 109.47129 * 299.99955 * 19 18 8 23 23 C 1.41436 * 107.11662 * 179.73597 * 3 2 1 24 24 N 1.30447 * 108.03761 * 0.23326 * 23 3 2 25 25 N 1.34399 * 126.31754 * 180.13841 * 2 1 3 26 26 C 1.46501 * 125.74522 * 0.02709 * 25 2 1 27 27 H 1.08991 * 109.47258 * 90.00289 * 1 2 3 28 28 H 1.09001 * 109.47298 * 210.00958 * 1 2 3 29 29 H 1.09000 * 109.47122 * 330.00453 * 1 2 3 30 30 H 1.07994 * 120.00261 * 316.59558 * 4 3 2 31 31 H 1.07998 * 120.00225 * 170.23058 * 5 4 3 32 32 H 1.08997 * 109.46927 * 29.99712 * 9 8 6 33 33 H 1.09003 * 109.46936 * 149.99831 * 9 8 6 34 34 H 0.97002 * 119.99417 * 180.02562 * 13 12 10 35 35 H 1.09006 * 109.46965 * 30.00262 * 18 8 6 36 36 H 1.08998 * 109.47157 * 150.00239 * 18 8 6 37 37 H 1.08004 * 125.98017 * 180.26480 * 23 3 2 38 38 H 1.08999 * 109.46803 * 270.31443 * 26 25 2 39 39 H 1.09001 * 109.46833 * 30.31052 * 26 25 2 40 40 H 1.09001 * 109.47674 * 150.30963 * 26 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3260 1.1142 0.0000 4 6 1.8904 2.5178 -0.0005 5 6 2.5016 3.4147 0.8030 6 6 3.4163 2.9725 1.7927 7 8 3.5599 1.7816 2.0001 8 7 4.1264 3.8708 2.5035 9 6 5.0708 3.4141 3.5261 10 6 4.3615 3.3032 4.8512 11 1 3.3124 3.5488 4.9244 12 6 5.0522 2.8882 5.9701 13 7 6.3299 2.5897 5.8811 14 14 4.1732 2.7514 7.6127 15 1 2.7502 3.1419 7.4467 16 1 4.2481 1.3502 8.0989 17 1 4.8226 3.6527 8.5982 18 6 3.9538 5.3040 2.2536 19 6 4.9425 5.7567 1.1772 20 9 4.7043 5.0454 -0.0037 21 9 4.7773 7.1252 0.9382 22 9 6.2495 5.5133 1.6126 23 6 3.6617 0.6490 0.0062 24 7 3.6352 -0.6552 0.0046 25 7 2.3030 -1.0829 -0.0026 26 6 1.8518 -2.4767 -0.0065 27 1 -0.3633 -0.0001 -1.0276 28 1 -0.3634 -0.8899 0.5140 29 1 -0.3633 0.8900 0.5138 30 1 1.0816 2.8320 -0.6435 31 1 2.2939 4.4687 0.6921 32 1 5.4684 2.4392 3.2440 33 1 5.8888 4.1296 3.6106 34 1 6.8155 2.2973 6.6682 35 1 2.9354 5.4937 1.9144 36 1 4.1394 5.8582 3.1737 37 1 4.5483 1.2657 0.0119 38 1 1.7341 -2.8234 1.0201 39 1 0.8960 -2.5477 -0.5258 40 1 2.5894 -3.0960 -0.5169 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000255694038.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:55:20 Heat of formation + Delta-G solvation = -100.973920 kcal Electronic energy + Delta-G solvation = -29463.376379 eV Core-core repulsion = 24865.310304 eV Total energy + Delta-G solvation = -4598.066075 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -50.99570 -48.51294 -48.48716 -42.12667 -40.70806 -36.99232 -35.04936 -34.76726 -34.05396 -32.08881 -30.78513 -29.12785 -27.64728 -27.40679 -25.50544 -24.52840 -23.38916 -21.63034 -20.68655 -19.85124 -19.48269 -19.25774 -18.76216 -18.23498 -17.69229 -17.32305 -16.74397 -16.47288 -16.02255 -15.76363 -15.44336 -15.38553 -15.05012 -14.96528 -14.91339 -14.68216 -14.62941 -14.40796 -14.16071 -14.09033 -13.88484 -13.61186 -13.45161 -13.33979 -13.23957 -13.07990 -13.04442 -12.84706 -12.64415 -12.51419 -12.20509 -11.72175 -11.54997 -10.85214 -10.65084 -10.43055 -10.06120 -9.54020 -8.66889 -8.21896 -6.36377 0.18481 1.05776 1.36063 1.38222 1.50062 1.76044 1.78982 2.11244 2.21533 2.40107 2.60593 3.03078 3.08640 3.12001 3.38437 3.69302 3.82910 3.96856 4.10021 4.17799 4.30083 4.39334 4.44113 4.50077 4.59133 4.64813 4.80104 4.88198 5.00707 5.08739 5.10166 5.23011 5.42212 5.48967 5.62517 5.73935 5.82627 6.05190 6.28173 6.66847 6.74483 6.85742 7.30204 7.52224 8.85838 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.008747 B = 0.005195 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.437975 B = 5388.944263 C = 7601.293181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.106 3.894 3 C -0.251 4.251 4 C 0.054 3.946 5 C -0.252 4.252 6 C 0.534 3.466 7 O -0.564 6.564 8 N -0.604 5.604 9 C 0.264 3.736 10 C -0.536 4.536 11 H 0.060 0.940 12 C 0.005 3.995 13 N -0.931 5.931 14 Si 0.968 3.032 15 H -0.262 1.262 16 H -0.287 1.287 17 H -0.270 1.270 18 C 0.073 3.927 19 C 0.433 3.567 20 F -0.183 7.183 21 F -0.176 7.176 22 F -0.198 7.198 23 C 0.117 3.883 24 N -0.361 5.361 25 N -0.380 5.380 26 C 0.093 3.907 27 H 0.112 0.888 28 H 0.085 0.915 29 H 0.093 0.907 30 H 0.179 0.821 31 H 0.161 0.839 32 H -0.005 1.005 33 H 0.024 0.976 34 H 0.265 0.735 35 H 0.159 0.841 36 H 0.129 0.871 37 H 0.148 0.852 38 H 0.073 0.927 39 H 0.124 0.876 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.991 1.833 -15.009 22.008 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.024 4.024 3 C -0.263 4.263 4 C 0.033 3.967 5 C -0.273 4.273 6 C 0.328 3.672 7 O -0.444 6.444 8 N -0.335 5.335 9 C 0.143 3.857 10 C -0.575 4.575 11 H 0.078 0.922 12 C -0.193 4.193 13 N -0.571 5.571 14 Si 0.792 3.208 15 H -0.186 1.186 16 H -0.213 1.213 17 H -0.195 1.195 18 C -0.053 4.053 19 C 0.377 3.623 20 F -0.164 7.164 21 F -0.158 7.158 22 F -0.180 7.180 23 C -0.070 4.070 24 N -0.182 5.182 25 N -0.162 5.162 26 C -0.047 4.047 27 H 0.130 0.870 28 H 0.104 0.896 29 H 0.112 0.888 30 H 0.196 0.804 31 H 0.178 0.822 32 H 0.013 0.987 33 H 0.042 0.958 34 H 0.074 0.926 35 H 0.177 0.823 36 H 0.147 0.853 37 H 0.166 0.834 38 H 0.091 0.909 39 H 0.143 0.857 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -15.053 -0.104 -14.798 21.109 hybrid contribution 0.708 0.545 1.148 1.455 sum -14.345 0.441 -13.650 19.807 Atomic orbital electron populations 1.20650 0.83297 1.05206 1.05315 1.22228 0.96165 0.86031 0.97977 1.19357 0.91584 0.94656 1.20673 1.22041 0.94122 0.88358 0.92187 1.22140 1.03427 1.02093 0.99637 1.18036 0.81119 0.85577 0.82454 1.90844 1.67025 1.17442 1.69085 1.48077 1.42448 1.05059 1.37934 1.18757 0.87730 0.93970 0.85221 1.21728 0.96570 1.45324 0.93864 0.92193 1.25883 0.95557 0.94656 1.03239 1.70087 1.09641 1.46215 1.31117 0.85362 0.79016 0.77572 0.78809 1.18579 1.21332 1.19501 1.22913 1.00152 0.83926 0.98349 1.21638 0.82005 0.75034 0.83650 1.93174 1.94144 1.78490 1.50634 1.93175 1.95349 1.32142 1.95090 1.93177 1.41075 1.94137 1.89595 1.23489 0.97883 0.91324 0.94285 1.76964 0.98528 1.14044 1.28635 1.48427 1.03116 1.07568 1.57060 1.22146 1.02437 0.76156 1.03985 0.87009 0.89591 0.88778 0.80374 0.82165 0.98661 0.95827 0.92577 0.82325 0.85324 0.83435 0.90884 0.85729 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.19 9.71 71.24 0.69 -0.50 16 2 C 0.11 2.80 7.02 42.18 0.30 3.10 16 3 C -0.25 -8.00 4.66 -20.19 -0.09 -8.09 16 4 C 0.05 1.31 9.77 23.82 0.23 1.54 16 5 C -0.25 -7.09 7.88 22.42 0.18 -6.91 16 6 C 0.53 21.87 6.69 85.13 0.57 22.44 16 7 O -0.56 -28.53 11.38 -4.46 -0.05 -28.58 16 8 N -0.60 -25.22 2.37 -836.54 -1.99 -27.21 16 9 C 0.26 14.34 4.96 85.63 0.42 14.77 16 10 C -0.54 -30.65 9.39 25.60 0.24 -30.41 16 11 H 0.06 3.33 7.81 -2.91 -0.02 3.31 16 12 C 0.01 0.31 5.46 84.66 0.46 0.77 16 13 N -0.93 -57.54 13.29 21.45 0.28 -57.26 16 14 Si 0.97 45.17 29.54 68.60 2.03 47.20 16 15 H -0.26 -11.62 7.11 99.48 0.71 -10.91 16 16 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 18 C 0.07 2.14 5.26 86.38 0.45 2.60 16 19 C 0.43 12.88 3.29 71.98 0.24 13.12 16 20 F -0.18 -5.46 15.50 44.97 0.70 -4.77 16 21 F -0.18 -4.49 17.32 44.97 0.78 -3.71 16 22 F -0.20 -7.39 16.23 44.97 0.73 -6.66 16 23 C 0.12 4.65 8.86 85.69 0.76 5.41 16 24 N -0.36 -14.41 12.49 -56.17 -0.70 -15.11 16 25 N -0.38 -11.41 3.98 -354.00 -1.41 -12.82 16 26 C 0.09 1.71 11.06 127.77 1.41 3.12 16 27 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 28 H 0.09 0.94 7.72 -2.39 -0.02 0.92 16 29 H 0.09 1.20 7.97 -2.39 -0.02 1.18 16 30 H 0.18 2.36 8.06 -2.91 -0.02 2.33 16 31 H 0.16 3.14 5.87 -2.91 -0.02 3.13 16 32 H 0.00 -0.30 7.42 -2.39 -0.02 -0.32 16 33 H 0.02 1.33 7.25 -2.39 -0.02 1.31 16 34 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 35 H 0.16 3.16 6.01 -2.38 -0.01 3.15 16 36 H 0.13 3.72 8.07 -2.39 -0.02 3.70 16 37 H 0.15 6.36 7.55 -2.91 -0.02 6.34 16 38 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.12 1.19 7.65 -2.39 -0.02 1.18 16 40 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -85.61 351.53 7.31 -78.29 By element: Atomic # 1 Polarization: 8.58 SS G_CDS: 1.08 Total: 9.66 kcal Atomic # 6 Polarization: 15.09 SS G_CDS: 5.86 Total: 20.96 kcal Atomic # 7 Polarization: -108.58 SS G_CDS: -3.81 Total: -112.39 kcal Atomic # 8 Polarization: -28.53 SS G_CDS: -0.05 Total: -28.58 kcal Atomic # 9 Polarization: -17.34 SS G_CDS: 2.21 Total: -15.13 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -85.61 7.31 -78.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000255694038.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.680 kcal (2) G-P(sol) polarization free energy of solvation -85.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.294 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds