Wall clock time and date at job start Tue Mar 31 2020 16:24:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47141 * 2 1 4 4 C 1.50703 * 109.47051 * 119.99991 * 2 1 3 5 5 N 1.29980 * 126.22797 * 300.02683 * 4 2 1 6 6 O 1.21287 * 110.43252 * 179.68467 * 5 4 2 7 7 C 1.33930 * 109.77118 * 0.46394 * 6 5 4 8 8 O 1.35070 * 126.63832 * 179.80177 * 7 6 5 9 9 C 1.42891 * 117.00200 * 359.69464 * 8 7 6 10 10 C 1.50702 * 109.47407 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99672 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00366 * 179.97438 * 10 9 8 13 13 C 1.37146 * 119.99898 * 354.95187 * 12 10 9 14 14 H 1.08000 * 119.99621 * 344.74351 * 13 12 10 15 15 C 1.38889 * 120.00031 * 164.73957 * 13 12 10 16 16 N 1.31418 * 120.00094 * 343.62416 * 15 13 12 17 17 Si 1.86802 * 120.00007 * 163.62287 * 15 13 12 18 18 H 1.48500 * 109.46876 * 90.00126 * 17 15 13 19 19 H 1.48494 * 109.47246 * 209.99888 * 17 15 13 20 20 H 1.48496 * 109.47129 * 330.00290 * 17 15 13 21 21 C 1.39784 * 120.00365 * 174.95322 * 12 10 9 22 22 C 1.38960 * 120.07870 * 101.20872 * 21 12 10 23 23 C 1.38085 * 119.92186 * 179.79551 * 22 21 12 24 24 C 1.38315 * 120.07665 * 0.45865 * 23 22 21 25 25 C 1.38306 * 120.15588 * 359.79060 * 24 23 22 26 26 C 1.38088 * 120.07910 * 359.97438 * 25 24 23 27 27 N 1.31901 * 106.72220 * 359.54206 * 7 6 5 28 28 H 1.09004 * 109.46643 * 60.00208 * 1 2 3 29 29 H 1.09003 * 109.47211 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47109 * 300.00427 * 1 2 3 31 31 H 1.09001 * 109.47276 * 239.99723 * 2 1 3 32 32 H 1.09006 * 109.47277 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47182 * 299.99462 * 3 2 1 34 34 H 1.08992 * 109.47468 * 59.99793 * 3 2 1 35 35 H 1.08998 * 109.47506 * 59.99357 * 9 8 7 36 36 H 1.09001 * 109.47023 * 300.00049 * 9 8 7 37 37 H 0.96998 * 120.00030 * 185.01570 * 16 15 13 38 38 H 1.07993 * 120.03832 * 359.97438 * 22 21 12 39 39 H 1.07994 * 119.96202 * 180.25150 * 23 22 21 40 40 H 1.07997 * 119.91916 * 179.77039 * 24 23 22 41 41 H 1.08003 * 119.96182 * 179.97438 * 25 24 23 42 42 H 1.07997 * 120.03751 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7937 -0.3738 2.4631 6 8 2.3334 -1.1476 3.2254 7 6 2.9991 -2.0786 2.5298 8 8 3.7216 -3.1007 3.0375 9 6 3.7920 -3.2012 4.4611 10 6 4.6336 -4.3927 4.8396 11 8 5.1244 -5.0876 3.9752 12 7 4.8409 -4.6860 6.1386 13 6 4.3738 -3.8436 7.1148 14 1 4.0645 -2.8407 6.8599 15 6 4.2984 -4.2802 8.4312 16 7 4.3593 -5.5647 8.7019 17 14 4.1105 -3.0415 9.8167 18 1 2.6677 -2.8024 10.0746 19 1 4.7516 -3.5730 11.0462 20 1 4.7627 -1.7644 9.4308 21 6 5.5319 -5.8489 6.4910 22 6 6.8684 -5.7786 6.8649 23 6 7.5467 -6.9288 7.2165 24 6 6.9001 -8.1512 7.1875 25 6 5.5714 -8.2255 6.8108 26 6 4.8855 -7.0787 6.4627 27 7 2.8080 -1.8075 1.2532 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 2.7877 -3.3226 4.8669 36 1 4.2409 -2.2950 4.8676 37 1 4.2339 -5.8749 9.6124 38 1 7.3751 -4.8251 6.8834 39 1 8.5842 -6.8744 7.5111 40 1 7.4341 -9.0496 7.4594 41 1 5.0696 -9.1817 6.7889 42 1 3.8481 -7.1376 6.1682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264489367.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:20 Heat of formation + Delta-G solvation = 41.180554 kcal Electronic energy + Delta-G solvation = -27734.695789 eV Core-core repulsion = 23684.650734 eV Total energy + Delta-G solvation = -4050.045054 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.41060 -39.84911 -38.79653 -37.15383 -36.93128 -34.94786 -34.34974 -31.90710 -31.14563 -29.98361 -29.73356 -27.63450 -27.44966 -25.17082 -24.60297 -23.70737 -22.05519 -21.62839 -20.65414 -19.51040 -18.60833 -18.32483 -17.97491 -17.04746 -16.13381 -15.83987 -15.56959 -15.20242 -14.99445 -14.75421 -14.46215 -14.42464 -14.19888 -13.65035 -13.31860 -13.11621 -12.76941 -12.52204 -12.49310 -12.11531 -11.93430 -11.85224 -11.75083 -11.63322 -11.51449 -11.27568 -11.26877 -11.10171 -10.88050 -10.85846 -10.66252 -10.49423 -10.39829 -9.60552 -9.27515 -8.90455 -8.34408 -7.96473 -7.71234 -6.44650 -4.26060 1.30907 1.93762 2.32501 2.36108 2.41680 2.94192 2.98710 3.08991 3.10624 3.40666 3.74088 3.87334 4.24980 4.53539 4.71526 4.80851 4.83191 4.88300 5.06834 5.28495 5.35502 5.40379 5.50038 5.54731 5.59682 5.62113 5.72269 5.76035 5.81213 5.90917 5.92915 5.94405 6.08500 6.31201 6.47064 6.66491 6.78380 6.94280 7.08650 7.22024 7.36196 7.43042 7.61981 7.82335 8.19206 8.26545 8.74897 9.05244 9.47852 10.39052 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.016106 B = 0.002969 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.047622 B = 9429.633324 C =10646.220136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.002 4.002 3 C -0.145 4.145 4 C 0.197 3.803 5 N -0.381 5.381 6 O 0.037 5.963 7 C 0.372 3.628 8 O -0.217 6.217 9 C 0.054 3.946 10 C 0.463 3.537 11 O -0.571 6.571 12 N -0.398 5.398 13 C -0.370 4.370 14 H 0.104 0.896 15 C 0.052 3.948 16 N -0.837 5.837 17 Si 0.922 3.078 18 H -0.274 1.274 19 H -0.279 1.279 20 H -0.267 1.267 21 C 0.234 3.766 22 C -0.119 4.119 23 C -0.123 4.123 24 C -0.142 4.142 25 C -0.121 4.121 26 C -0.065 4.065 27 N -0.483 5.483 28 H 0.070 0.930 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.276 0.724 38 H 0.109 0.891 39 H 0.108 0.892 40 H 0.106 0.894 41 H 0.108 0.892 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.775 6.993 -7.073 10.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.022 4.022 3 C -0.203 4.203 4 C -0.077 4.077 5 N -0.102 5.102 6 O -0.018 6.018 7 C 0.117 3.883 8 O -0.118 6.118 9 C -0.024 4.024 10 C 0.251 3.749 11 O -0.455 6.455 12 N -0.116 5.116 13 C -0.495 4.495 14 H 0.122 0.878 15 C -0.158 4.158 16 N -0.471 5.471 17 Si 0.747 3.253 18 H -0.200 1.200 19 H -0.204 1.204 20 H -0.191 1.191 21 C 0.144 3.856 22 C -0.139 4.139 23 C -0.141 4.141 24 C -0.160 4.160 25 C -0.140 4.140 26 C -0.084 4.084 27 N -0.234 5.234 28 H 0.089 0.911 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.078 0.922 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.123 0.877 36 H 0.118 0.882 37 H 0.087 0.913 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.124 0.876 41 H 0.126 0.874 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -3.682 6.805 -7.447 10.738 hybrid contribution -0.115 0.427 1.525 1.588 sum -3.797 7.232 -5.922 10.089 Atomic orbital electron populations 1.21852 0.92838 1.02711 1.02909 1.19557 0.96371 0.95302 0.90992 1.21849 1.01616 0.93928 1.02908 1.25619 0.95542 0.91776 0.94730 1.74576 1.19563 1.13677 1.02430 1.85470 1.49855 1.30853 1.35588 1.26425 0.89267 0.86520 0.86098 1.86382 1.62014 1.37343 1.26059 1.22845 1.03635 1.01428 0.74450 1.19122 0.85624 0.87054 0.83089 1.90675 1.53436 1.52941 1.48418 1.41109 1.46927 1.19790 1.03764 1.19618 1.47225 0.95602 0.87056 0.87802 1.25285 0.95265 0.96450 0.98807 1.69936 1.42753 1.12752 1.21683 0.86002 0.78761 0.80335 0.80193 1.19969 1.20425 1.19096 1.17026 0.89567 0.85512 0.93526 1.20969 0.93959 0.97845 1.01127 1.20676 0.98847 0.92655 1.01955 1.20779 0.95165 0.96852 1.03201 1.20699 0.94608 0.97310 1.01351 1.20804 0.98338 0.91720 0.97574 1.72291 1.22148 1.16431 1.12563 0.91118 0.92161 0.91758 0.87887 0.92174 0.91119 0.91763 0.87726 0.88244 0.91297 0.87331 0.87430 0.87605 0.87397 0.87556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.24 9.18 37.16 0.34 -0.90 16 2 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 3 C -0.14 -1.23 9.17 37.15 0.34 -0.89 16 4 C 0.20 2.83 6.72 -156.45 -1.05 1.78 16 5 N -0.38 -5.83 12.15 31.08 0.38 -5.45 16 6 O 0.04 0.59 10.85 -5.78 -0.06 0.52 16 7 C 0.37 6.44 9.14 52.40 0.48 6.91 16 8 O -0.22 -4.15 9.71 -47.68 -0.46 -4.61 16 9 C 0.05 0.99 4.73 36.01 0.17 1.16 16 10 C 0.46 10.63 7.66 -10.99 -0.08 10.55 16 11 O -0.57 -14.88 16.48 -14.35 -0.24 -15.12 16 12 N -0.40 -9.41 2.66 -58.98 -0.16 -9.57 16 13 C -0.37 -8.48 9.19 -14.93 -0.14 -8.61 16 14 H 0.10 2.16 6.46 -52.49 -0.34 1.82 16 15 C 0.05 1.19 5.24 -17.49 -0.09 1.10 16 16 N -0.84 -20.24 10.34 55.49 0.57 -19.66 16 17 Si 0.92 18.05 29.59 -169.99 -5.03 13.02 16 18 H -0.27 -5.33 7.11 56.52 0.40 -4.93 16 19 H -0.28 -5.58 7.11 56.52 0.40 -5.18 16 20 H -0.27 -5.14 7.11 56.52 0.40 -4.74 16 21 C 0.23 5.54 2.29 -83.70 -0.19 5.35 16 22 C -0.12 -2.64 9.95 -39.37 -0.39 -3.04 16 23 C -0.12 -2.38 10.04 -39.61 -0.40 -2.78 16 24 C -0.14 -2.63 10.04 -39.53 -0.40 -3.03 16 25 C -0.12 -2.39 10.04 -39.61 -0.40 -2.78 16 26 C -0.06 -1.47 8.66 -39.37 -0.34 -1.82 16 27 N -0.48 -8.20 11.58 -13.75 -0.16 -8.36 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 35 H 0.10 1.75 8.14 -51.93 -0.42 1.32 16 36 H 0.10 1.62 7.52 -51.93 -0.39 1.22 16 37 H 0.28 6.42 8.32 -40.82 -0.34 6.08 16 38 H 0.11 2.33 8.06 -52.49 -0.42 1.91 16 39 H 0.11 1.75 8.06 -52.49 -0.42 1.33 16 40 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 41 H 0.11 1.82 8.06 -52.48 -0.42 1.39 16 42 H 0.11 2.44 8.06 -52.49 -0.42 2.02 16 LS Contribution 367.83 15.07 5.54 5.54 Total: -1.00 -28.99 367.83 -7.43 -36.43 By element: Atomic # 1 Polarization: 9.94 SS G_CDS: -5.36 Total: 4.58 kcal Atomic # 6 Polarization: 5.14 SS G_CDS: -2.46 Total: 2.68 kcal Atomic # 7 Polarization: -43.68 SS G_CDS: 0.64 Total: -43.05 kcal Atomic # 8 Polarization: -18.44 SS G_CDS: -0.76 Total: -19.20 kcal Atomic # 14 Polarization: 18.05 SS G_CDS: -5.03 Total: 13.02 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -28.99 -7.43 -36.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264489367.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.610 kcal (2) G-P(sol) polarization free energy of solvation -28.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.435 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.181 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds