Wall clock time and date at job start Tue Mar 31 2020 16:24:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52993 * 109.47141 * 2 1 4 4 C 1.50703 * 109.47051 * 119.99991 * 2 1 3 5 5 N 1.29980 * 126.22797 * 300.02683 * 4 2 1 6 6 O 1.21287 * 110.43252 * 179.68467 * 5 4 2 7 7 C 1.33930 * 109.77118 * 0.46394 * 6 5 4 8 8 O 1.35070 * 126.63832 * 179.80177 * 7 6 5 9 9 C 1.42891 * 117.00200 * 359.69464 * 8 7 6 10 10 C 1.50702 * 109.47407 * 179.97438 * 9 8 7 11 11 O 1.21280 * 119.99672 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00366 * 179.97438 * 10 9 8 13 13 C 1.37146 * 119.99898 * 354.95187 * 12 10 9 14 14 H 1.08000 * 119.99621 * 344.74351 * 13 12 10 15 15 C 1.38889 * 120.00031 * 164.73957 * 13 12 10 16 16 N 1.31418 * 120.00094 * 343.62416 * 15 13 12 17 17 Si 1.86802 * 120.00007 * 163.62287 * 15 13 12 18 18 H 1.48500 * 109.46876 * 90.00126 * 17 15 13 19 19 H 1.48494 * 109.47246 * 209.99888 * 17 15 13 20 20 H 1.48496 * 109.47129 * 330.00290 * 17 15 13 21 21 C 1.39784 * 120.00365 * 174.95322 * 12 10 9 22 22 C 1.38960 * 120.07870 * 101.20872 * 21 12 10 23 23 C 1.38085 * 119.92186 * 179.79551 * 22 21 12 24 24 C 1.38315 * 120.07665 * 0.45865 * 23 22 21 25 25 C 1.38306 * 120.15588 * 359.79060 * 24 23 22 26 26 C 1.38088 * 120.07910 * 359.97438 * 25 24 23 27 27 N 1.31901 * 106.72220 * 359.54206 * 7 6 5 28 28 H 1.09004 * 109.46643 * 60.00208 * 1 2 3 29 29 H 1.09003 * 109.47211 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47109 * 300.00427 * 1 2 3 31 31 H 1.09001 * 109.47276 * 239.99723 * 2 1 3 32 32 H 1.09006 * 109.47277 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47182 * 299.99462 * 3 2 1 34 34 H 1.08992 * 109.47468 * 59.99793 * 3 2 1 35 35 H 1.08998 * 109.47506 * 59.99357 * 9 8 7 36 36 H 1.09001 * 109.47023 * 300.00049 * 9 8 7 37 37 H 0.96998 * 120.00030 * 185.01570 * 16 15 13 38 38 H 1.07993 * 120.03832 * 359.97438 * 22 21 12 39 39 H 1.07994 * 119.96202 * 180.25150 * 23 22 21 40 40 H 1.07997 * 119.91916 * 179.77039 * 24 23 22 41 41 H 1.08003 * 119.96182 * 179.97438 * 25 24 23 42 42 H 1.07997 * 120.03751 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7937 -0.3738 2.4631 6 8 2.3334 -1.1476 3.2254 7 6 2.9991 -2.0786 2.5298 8 8 3.7216 -3.1007 3.0375 9 6 3.7920 -3.2012 4.4611 10 6 4.6336 -4.3927 4.8396 11 8 5.1244 -5.0876 3.9752 12 7 4.8409 -4.6860 6.1386 13 6 4.3738 -3.8436 7.1148 14 1 4.0645 -2.8407 6.8599 15 6 4.2984 -4.2802 8.4312 16 7 4.3593 -5.5647 8.7019 17 14 4.1105 -3.0415 9.8167 18 1 2.6677 -2.8024 10.0746 19 1 4.7516 -3.5730 11.0462 20 1 4.7627 -1.7644 9.4308 21 6 5.5319 -5.8489 6.4910 22 6 6.8684 -5.7786 6.8649 23 6 7.5467 -6.9288 7.2165 24 6 6.9001 -8.1512 7.1875 25 6 5.5714 -8.2255 6.8108 26 6 4.8855 -7.0787 6.4627 27 7 2.8080 -1.8075 1.2532 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 3.1300 1.4425 -0.0005 33 1 1.6767 1.9563 -0.8901 34 1 1.6767 1.9563 0.8899 35 1 2.7877 -3.3226 4.8669 36 1 4.2409 -2.2950 4.8676 37 1 4.2339 -5.8749 9.6124 38 1 7.3751 -4.8251 6.8834 39 1 8.5842 -6.8744 7.5111 40 1 7.4341 -9.0496 7.4594 41 1 5.0696 -9.1817 6.7889 42 1 3.8481 -7.1376 6.1682 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264489367.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:24:19 Heat of formation + Delta-G solvation = 24.021220 kcal Electronic energy + Delta-G solvation = -27735.439873 eV Core-core repulsion = 23684.650734 eV Total energy + Delta-G solvation = -4050.789139 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -46.64747 -41.50413 -40.31494 -38.80394 -37.95355 -36.70727 -35.41810 -33.68806 -32.36456 -31.58728 -31.31134 -29.18728 -28.11058 -26.93373 -25.71355 -24.95577 -23.57613 -23.23984 -21.86238 -21.22067 -19.86702 -19.61785 -19.59202 -18.42893 -17.63329 -17.37546 -17.17534 -16.70671 -16.37698 -16.10237 -16.03270 -15.78861 -15.19647 -14.86849 -14.77706 -14.42748 -14.40720 -14.11427 -13.52597 -13.33623 -13.23602 -13.18255 -13.07465 -12.86269 -12.75146 -12.66501 -12.51532 -12.32107 -12.25558 -12.09614 -12.01707 -11.93555 -11.84566 -11.30487 -10.70966 -10.56918 -10.10042 -9.58889 -9.37198 -8.17768 -6.06245 0.02597 0.52885 0.76236 0.80801 1.11355 1.34468 1.48357 1.57593 1.67112 1.71952 2.23087 2.64924 2.78517 3.02532 3.21146 3.40502 3.76854 3.94596 4.00749 4.04107 4.07859 4.17022 4.22672 4.27800 4.38731 4.57595 4.64981 4.73214 4.75642 4.88851 4.89326 4.91508 5.04440 5.06482 5.28435 5.30132 5.32662 5.34173 5.43575 5.60011 5.75109 5.78609 5.95934 6.18869 6.49041 6.96429 7.00960 7.30408 7.72260 8.64162 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.016106 B = 0.002969 C = 0.002629 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1738.047622 B = 9429.633324 C =10646.220136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.007 4.007 3 C -0.140 4.140 4 C 0.203 3.797 5 N -0.388 5.388 6 O 0.036 5.964 7 C 0.367 3.633 8 O -0.236 6.236 9 C 0.066 3.934 10 C 0.448 3.552 11 O -0.614 6.614 12 N -0.403 5.403 13 C -0.385 4.385 14 H 0.122 0.878 15 C 0.014 3.986 16 N -0.860 5.860 17 Si 0.986 3.014 18 H -0.269 1.269 19 H -0.285 1.285 20 H -0.259 1.259 21 C 0.204 3.796 22 C -0.145 4.145 23 C -0.120 4.120 24 C -0.137 4.137 25 C -0.121 4.121 26 C -0.093 4.093 27 N -0.501 5.501 28 H 0.101 0.899 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.113 0.887 32 H 0.051 0.949 33 H 0.100 0.900 34 H 0.056 0.944 35 H 0.121 0.879 36 H 0.122 0.878 37 H 0.273 0.727 38 H 0.103 0.897 39 H 0.142 0.858 40 H 0.148 0.852 41 H 0.136 0.864 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.874 7.932 -6.915 11.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 C -0.198 4.198 4 C -0.071 4.071 5 N -0.110 5.110 6 O -0.017 6.017 7 C 0.111 3.889 8 O -0.139 6.139 9 C -0.011 4.011 10 C 0.238 3.762 11 O -0.501 6.501 12 N -0.119 5.119 13 C -0.510 4.510 14 H 0.140 0.860 15 C -0.194 4.194 16 N -0.494 5.494 17 Si 0.809 3.191 18 H -0.195 1.195 19 H -0.211 1.211 20 H -0.183 1.183 21 C 0.115 3.885 22 C -0.165 4.165 23 C -0.139 4.139 24 C -0.155 4.155 25 C -0.140 4.140 26 C -0.112 4.112 27 N -0.253 5.253 28 H 0.119 0.881 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.131 0.869 32 H 0.070 0.930 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.138 0.862 36 H 0.140 0.860 37 H 0.084 0.916 38 H 0.121 0.879 39 H 0.159 0.841 40 H 0.166 0.834 41 H 0.154 0.846 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -3.790 7.757 -7.273 11.289 hybrid contribution -0.079 0.086 1.437 1.442 sum -3.870 7.843 -5.836 10.514 Atomic orbital electron populations 1.21849 0.91388 1.02530 1.04068 1.19914 0.97483 0.95937 0.89327 1.21846 1.01110 0.92789 1.04064 1.26444 0.94110 0.90786 0.95713 1.74563 1.19947 1.13685 1.02856 1.85473 1.49808 1.30674 1.35698 1.26334 0.89605 0.86539 0.86386 1.86321 1.62782 1.38449 1.26312 1.22711 1.03634 1.00214 0.74546 1.19797 0.85758 0.88034 0.82628 1.90622 1.55340 1.54785 1.49382 1.41363 1.46514 1.19888 1.04176 1.20103 1.47284 0.96348 0.87275 0.86022 1.26075 0.94815 0.97875 1.00597 1.70091 1.43319 1.14264 1.21721 0.85031 0.78700 0.78387 0.76995 1.19477 1.21109 1.18296 1.17377 0.90517 0.85930 0.94718 1.21139 0.93829 0.98919 1.02613 1.21111 1.00333 0.92036 1.00381 1.21248 0.94670 0.98110 1.01475 1.21086 0.95415 0.97478 1.00011 1.20848 0.97930 0.92859 0.99584 1.72311 1.22853 1.17547 1.12596 0.88070 0.93018 0.92480 0.86852 0.92963 0.88085 0.92476 0.86154 0.86013 0.91617 0.87858 0.84063 0.83398 0.84602 0.89456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.18 71.98 0.66 -1.45 16 2 C -0.01 -0.12 3.39 -11.54 -0.04 -0.16 16 3 C -0.14 -2.09 9.17 71.98 0.66 -1.42 16 4 C 0.20 5.69 6.72 138.49 0.93 6.62 16 5 N -0.39 -11.65 12.15 -59.67 -0.72 -12.38 16 6 O 0.04 1.13 10.85 94.34 1.02 2.16 16 7 C 0.37 12.80 9.14 130.37 1.19 13.99 16 8 O -0.24 -9.29 9.71 -54.03 -0.52 -9.81 16 9 C 0.07 2.47 4.73 71.24 0.34 2.81 16 10 C 0.45 21.35 7.66 87.66 0.67 22.02 16 11 O -0.61 -33.56 16.48 16.01 0.26 -33.29 16 12 N -0.40 -19.62 2.66 -458.90 -1.22 -20.84 16 13 C -0.39 -17.80 9.19 84.02 0.77 -17.03 16 14 H 0.12 4.99 6.46 -2.91 -0.02 4.97 16 15 C 0.01 0.62 5.24 84.91 0.44 1.07 16 16 N -0.86 -42.00 10.34 21.65 0.22 -41.77 16 17 Si 0.99 36.61 29.59 68.60 2.03 38.64 16 18 H -0.27 -9.75 7.11 99.48 0.71 -9.04 16 19 H -0.29 -10.82 7.11 99.48 0.71 -10.12 16 20 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 21 C 0.20 9.97 2.29 38.22 0.09 10.06 16 22 C -0.15 -6.52 9.95 22.41 0.22 -6.30 16 23 C -0.12 -4.48 10.04 22.25 0.22 -4.26 16 24 C -0.14 -4.78 10.04 22.30 0.22 -4.55 16 25 C -0.12 -4.70 10.04 22.25 0.22 -4.48 16 26 C -0.09 -4.33 8.66 22.41 0.19 -4.14 16 27 N -0.50 -17.02 11.58 -427.90 -4.96 -21.97 16 28 H 0.10 0.92 8.14 -2.39 -0.02 0.90 16 29 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.11 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 33 H 0.10 0.90 8.14 -2.39 -0.02 0.89 16 34 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 35 H 0.12 4.06 8.14 -2.39 -0.02 4.04 16 36 H 0.12 3.94 7.52 -2.39 -0.02 3.92 16 37 H 0.27 12.83 8.32 -92.71 -0.77 12.06 16 38 H 0.10 4.57 8.06 -2.91 -0.02 4.54 16 39 H 0.14 4.21 8.06 -2.91 -0.02 4.18 16 40 H 0.15 3.89 8.06 -2.91 -0.02 3.86 16 41 H 0.14 4.35 8.06 -2.91 -0.02 4.33 16 42 H 0.09 4.25 8.06 -2.91 -0.02 4.22 16 Total: -1.00 -64.83 367.83 3.96 -60.87 By element: Atomic # 1 Polarization: 24.60 SS G_CDS: 1.04 Total: 25.64 kcal Atomic # 6 Polarization: 5.96 SS G_CDS: 6.80 Total: 12.77 kcal Atomic # 7 Polarization: -90.28 SS G_CDS: -6.68 Total: -96.96 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: 0.76 Total: -40.95 kcal Atomic # 14 Polarization: 36.61 SS G_CDS: 2.03 Total: 38.64 kcal Total: -64.83 3.96 -60.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264489367.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.886 kcal (2) G-P(sol) polarization free energy of solvation -64.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.865 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds