Wall clock time and date at job start Tue Mar 31 2020 16:58:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47039 * 2 1 4 4 N 1.46503 * 109.46704 * 180.02562 * 3 2 1 5 5 C 1.36759 * 119.99910 * 85.38150 * 4 3 2 6 6 H 1.08002 * 119.99529 * 226.74146 * 5 4 3 7 7 C 1.39122 * 120.00346 * 46.73780 * 5 4 3 8 8 N 1.31308 * 119.99987 * 355.83426 * 7 5 4 9 9 Si 1.86799 * 120.00177 * 175.83033 * 7 5 4 10 10 H 1.48501 * 109.47113 * 60.00069 * 9 7 5 11 11 H 1.48499 * 109.47569 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47276 * 300.00531 * 9 7 5 13 13 C 1.34775 * 120.00053 * 265.37306 * 4 3 2 14 14 O 1.21537 * 119.99847 * 5.02380 * 13 4 3 15 15 C 1.48308 * 119.99926 * 185.02306 * 13 4 3 16 16 N 1.30824 * 126.32224 * 5.19941 * 15 13 4 17 17 O 1.21278 * 110.32890 * 179.84075 * 16 15 13 18 18 C 1.34225 * 109.91557 * 0.43278 * 17 16 15 19 19 C 1.47862 * 126.55951 * 179.75279 * 18 17 16 20 20 C 1.39595 * 120.11651 * 179.69717 * 19 18 17 21 21 C 1.37974 * 119.96514 * 179.74047 * 20 19 18 22 22 C 1.38287 * 120.20370 * 0.53917 * 21 20 19 23 23 C 1.38821 * 120.23402 * 359.71661 * 22 21 20 24 24 O 1.35904 * 119.98358 * 179.97438 * 23 22 21 25 25 C 1.42902 * 117.00289 * 0.02833 * 24 23 22 26 26 C 1.38496 * 120.02969 * 0.02691 * 23 22 21 27 27 N 1.31911 * 106.88443 * 359.73204 * 18 17 16 28 28 H 1.09000 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47052 * 299.99849 * 1 2 3 30 30 H 1.08995 * 109.46953 * 59.99937 * 1 2 3 31 31 H 1.09004 * 109.47142 * 239.99656 * 2 1 3 32 32 H 1.09002 * 109.47519 * 120.00391 * 2 1 3 33 33 H 1.09000 * 109.47075 * 60.00165 * 3 2 1 34 34 H 1.08995 * 109.47299 * 299.99851 * 3 2 1 35 35 H 0.97002 * 119.99956 * 179.97438 * 8 7 5 36 36 H 1.07998 * 120.01886 * 0.02562 * 20 19 18 37 37 H 1.07994 * 119.89676 * 180.23173 * 21 20 19 38 38 H 1.07999 * 119.88517 * 179.69583 * 22 21 20 39 39 H 1.09003 * 109.47332 * 59.99255 * 25 24 23 40 40 H 1.09000 * 109.47451 * 179.97438 * 25 24 23 41 41 H 1.08999 * 109.46964 * 299.99624 * 25 24 23 42 42 H 1.07997 * 120.09885 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1883 1.3472 -1.1815 6 1 5.0133 0.6563 -1.2737 7 6 3.8206 2.1401 -2.2638 8 7 2.7676 2.9199 -2.1788 9 14 4.8250 2.0955 -3.8382 10 1 4.8236 0.7158 -4.3874 11 1 4.2297 3.0249 -4.8317 12 1 6.2208 2.5108 -3.5469 13 6 4.1794 1.5363 1.1625 14 8 3.5756 1.5291 2.2173 15 6 5.6582 1.6485 1.1552 16 7 6.4214 1.7637 0.0990 17 8 7.5867 1.8371 0.4271 18 6 7.6908 1.7652 1.7634 19 6 8.9398 1.8124 2.5533 20 6 8.8912 1.7319 3.9461 21 6 10.0591 1.7709 4.6798 22 6 11.2784 1.9007 4.0404 23 6 11.3360 1.9868 2.6561 24 8 12.5370 2.1149 2.0330 25 6 13.6985 2.1534 2.8646 26 6 10.1702 1.9434 1.9097 27 7 6.4656 1.6447 2.2372 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 2.5115 3.4731 -2.9333 36 1 7.9404 1.6345 4.4488 37 1 10.0204 1.7047 5.7570 38 1 12.1889 1.9356 4.6201 39 1 13.7641 1.2301 3.4402 40 1 14.5876 2.2573 2.2425 41 1 13.6299 3.0019 3.5454 42 1 10.2137 2.0107 0.8327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268456562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:04 Heat of formation + Delta-G solvation = 34.951351 kcal Electronic energy + Delta-G solvation = -27630.022079 eV Core-core repulsion = 23579.706906 eV Total energy + Delta-G solvation = -4050.315173 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.92890 -40.32585 -38.63820 -37.76287 -35.49239 -34.80998 -33.12609 -32.64165 -31.43344 -30.86268 -29.78683 -27.61339 -26.31352 -25.29411 -24.15567 -23.77995 -22.52597 -21.65541 -20.73426 -19.58495 -18.73568 -17.66225 -17.57303 -16.43916 -16.34838 -16.10017 -16.01847 -15.95457 -14.99542 -14.58397 -14.45634 -14.07694 -13.89310 -13.82265 -13.66472 -13.12032 -13.05090 -12.55916 -12.49968 -12.03076 -11.91874 -11.70058 -11.56607 -11.54730 -11.22818 -11.17589 -11.05876 -10.98631 -10.77145 -10.55016 -10.43681 -10.27427 -9.99525 -9.71050 -9.21388 -8.87914 -8.81011 -8.41066 -7.60745 -6.39223 -4.28169 0.50450 1.20509 1.84322 2.45092 2.83464 3.11143 3.15525 3.19039 3.24146 3.58904 3.73481 4.09364 4.20775 4.46278 4.55180 4.70508 4.79483 4.82551 4.90929 5.06240 5.10551 5.15277 5.19629 5.24252 5.63817 5.69161 5.82379 5.86579 5.97545 6.05624 6.13036 6.21922 6.26329 6.40824 6.44293 6.54467 6.58982 6.68150 6.83141 7.08864 7.10631 7.28412 7.59398 7.83420 8.30396 8.64906 8.96731 9.27344 9.69661 10.53874 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.016212 B = 0.003073 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.723309 B = 9110.811842 C =10585.731249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.131 4.131 3 C 0.101 3.899 4 N -0.409 5.409 5 C -0.328 4.328 6 H 0.094 0.906 7 C 0.055 3.945 8 N -0.862 5.862 9 Si 0.922 3.078 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.265 1.265 13 C 0.544 3.456 14 O -0.574 6.574 15 C 0.163 3.837 16 N -0.306 5.306 17 O 0.084 5.916 18 C 0.183 3.817 19 C 0.029 3.971 20 C -0.104 4.104 21 C -0.082 4.082 22 C -0.190 4.190 23 C 0.124 3.876 24 O -0.315 6.315 25 C 0.027 3.973 26 C -0.117 4.117 27 N -0.431 5.431 28 H 0.045 0.955 29 H 0.049 0.951 30 H 0.053 0.947 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.055 0.945 34 H 0.131 0.869 35 H 0.274 0.726 36 H 0.143 0.857 37 H 0.135 0.865 38 H 0.132 0.868 39 H 0.056 0.944 40 H 0.100 0.900 41 H 0.056 0.944 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.364 -1.637 7.626 18.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.170 4.170 3 C -0.021 4.021 4 N -0.127 5.127 5 C -0.457 4.457 6 H 0.112 0.888 7 C -0.152 4.152 8 N -0.499 5.499 9 Si 0.747 3.253 10 H -0.196 1.196 11 H -0.207 1.207 12 H -0.190 1.190 13 C 0.329 3.671 14 O -0.457 6.457 15 C -0.110 4.110 16 N -0.010 5.010 17 O 0.018 5.982 18 C -0.036 4.036 19 C 0.027 3.973 20 C -0.124 4.124 21 C -0.100 4.100 22 C -0.210 4.210 23 C 0.079 3.921 24 O -0.228 6.228 25 C -0.068 4.068 26 C -0.138 4.138 27 N -0.164 5.164 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.073 0.927 34 H 0.148 0.852 35 H 0.085 0.915 36 H 0.161 0.839 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.074 0.926 40 H 0.119 0.881 41 H 0.075 0.925 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 15.204 -1.511 7.292 16.930 hybrid contribution 0.832 0.051 -0.589 1.021 sum 16.036 -1.460 6.703 17.442 Atomic orbital electron populations 1.21641 0.96375 1.00469 1.01480 1.21786 0.94828 0.99072 1.01296 1.21988 0.79750 0.95453 1.04916 1.43277 1.05446 1.59671 1.04273 1.19514 1.15485 1.22130 0.88551 0.88821 1.25571 0.95687 0.93738 1.00166 1.69498 1.23357 1.24583 1.32469 0.86067 0.80565 0.78476 0.80156 1.19592 1.20742 1.18986 1.16910 0.81537 0.83213 0.85475 1.90661 1.67173 1.56623 1.31217 1.25786 0.99319 1.03235 0.82645 1.75564 0.87967 1.15756 1.21670 1.85503 1.24242 1.64622 1.23840 1.26196 0.94250 1.00439 0.82694 1.16881 0.86121 1.02693 0.91628 1.21222 0.99871 0.99629 0.91647 1.20874 0.91044 0.97904 1.00204 1.21420 0.99509 1.06843 0.93205 1.18689 0.85464 0.97176 0.90812 1.86098 1.12683 1.88159 1.35861 1.23078 0.86231 1.01383 0.96105 1.20438 0.88643 1.03590 1.01083 1.72177 0.98341 1.17206 1.28698 0.93624 0.93174 0.92766 0.92038 0.93292 0.92659 0.85228 0.91511 0.83925 0.84733 0.85023 0.92558 0.88149 0.92549 0.83751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.91 37.16 0.37 -2.06 16 2 C -0.13 -2.75 6.24 -26.73 -0.17 -2.92 16 3 C 0.10 2.46 5.08 -4.04 -0.02 2.44 16 4 N -0.41 -10.80 2.52 -115.73 -0.29 -11.09 16 5 C -0.33 -8.59 7.41 -15.03 -0.11 -8.70 16 6 H 0.09 2.46 6.77 -52.49 -0.36 2.11 16 7 C 0.06 1.41 5.41 -17.45 -0.09 1.32 16 8 N -0.86 -22.50 10.77 55.50 0.60 -21.90 16 9 Si 0.92 20.10 29.56 -169.99 -5.02 15.07 16 10 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 11 H -0.28 -6.03 7.11 56.52 0.40 -5.62 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 C 0.54 14.64 7.65 -12.12 -0.09 14.55 16 14 O -0.57 -16.31 16.66 5.33 0.09 -16.22 16 15 C 0.16 4.01 7.71 -156.32 -1.21 2.81 16 16 N -0.31 -7.12 9.35 31.18 0.29 -6.83 16 17 O 0.08 1.66 11.11 16.59 0.18 1.85 16 18 C 0.18 3.34 8.00 -13.81 -0.11 3.23 16 19 C 0.03 0.41 5.87 -104.99 -0.62 -0.20 16 20 C -0.10 -1.28 9.70 -39.17 -0.38 -1.66 16 21 C -0.08 -0.77 10.03 -39.66 -0.40 -1.17 16 22 C -0.19 -1.68 9.03 -39.35 -0.36 -2.04 16 23 C 0.12 1.33 6.68 -39.27 -0.26 1.07 16 24 O -0.31 -3.13 10.49 -19.44 -0.20 -3.33 16 25 C 0.03 0.15 9.81 101.05 0.99 1.14 16 26 C -0.12 -1.46 9.67 -39.03 -0.38 -1.83 16 27 N -0.43 -9.42 11.27 -10.26 -0.12 -9.54 16 28 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 31 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.05 1.37 7.36 -51.93 -0.38 0.99 16 34 H 0.13 3.29 5.19 -51.93 -0.27 3.02 16 35 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 36 H 0.14 1.83 7.87 -52.49 -0.41 1.42 16 37 H 0.13 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.13 0.79 6.28 -52.49 -0.33 0.46 16 39 H 0.06 0.25 7.66 -51.93 -0.40 -0.15 16 40 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.25 7.66 -51.93 -0.40 -0.14 16 42 H 0.14 1.72 7.94 -52.49 -0.42 1.30 16 LS Contribution 363.17 15.07 5.47 5.47 Total: -1.00 -31.60 363.17 -6.89 -38.49 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.06 Total: 2.05 kcal Atomic # 6 Polarization: 8.80 SS G_CDS: -2.83 Total: 5.97 kcal Atomic # 7 Polarization: -49.84 SS G_CDS: 0.48 Total: -49.35 kcal Atomic # 8 Polarization: -17.77 SS G_CDS: 0.07 Total: -17.70 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.07 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.60 -6.89 -38.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268456562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.439 kcal (2) G-P(sol) polarization free energy of solvation -31.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds