Wall clock time and date at job start Tue Mar 31 2020 16:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47039 * 2 1 4 4 N 1.46503 * 109.46704 * 180.02562 * 3 2 1 5 5 C 1.36759 * 119.99910 * 85.38150 * 4 3 2 6 6 H 1.08002 * 119.99529 * 226.74146 * 5 4 3 7 7 C 1.39122 * 120.00346 * 46.73780 * 5 4 3 8 8 N 1.31308 * 119.99987 * 355.83426 * 7 5 4 9 9 Si 1.86799 * 120.00177 * 175.83033 * 7 5 4 10 10 H 1.48501 * 109.47113 * 60.00069 * 9 7 5 11 11 H 1.48499 * 109.47569 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.47276 * 300.00531 * 9 7 5 13 13 C 1.34775 * 120.00053 * 265.37306 * 4 3 2 14 14 O 1.21537 * 119.99847 * 5.02380 * 13 4 3 15 15 C 1.48308 * 119.99926 * 185.02306 * 13 4 3 16 16 N 1.30824 * 126.32224 * 5.19941 * 15 13 4 17 17 O 1.21278 * 110.32890 * 179.84075 * 16 15 13 18 18 C 1.34225 * 109.91557 * 0.43278 * 17 16 15 19 19 C 1.47862 * 126.55951 * 179.75279 * 18 17 16 20 20 C 1.39595 * 120.11651 * 179.69717 * 19 18 17 21 21 C 1.37974 * 119.96514 * 179.74047 * 20 19 18 22 22 C 1.38287 * 120.20370 * 0.53917 * 21 20 19 23 23 C 1.38821 * 120.23402 * 359.71661 * 22 21 20 24 24 O 1.35904 * 119.98358 * 179.97438 * 23 22 21 25 25 C 1.42902 * 117.00289 * 0.02833 * 24 23 22 26 26 C 1.38496 * 120.02969 * 0.02691 * 23 22 21 27 27 N 1.31911 * 106.88443 * 359.73204 * 18 17 16 28 28 H 1.09000 * 109.47012 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.47052 * 299.99849 * 1 2 3 30 30 H 1.08995 * 109.46953 * 59.99937 * 1 2 3 31 31 H 1.09004 * 109.47142 * 239.99656 * 2 1 3 32 32 H 1.09002 * 109.47519 * 120.00391 * 2 1 3 33 33 H 1.09000 * 109.47075 * 60.00165 * 3 2 1 34 34 H 1.08995 * 109.47299 * 299.99851 * 3 2 1 35 35 H 0.97002 * 119.99956 * 179.97438 * 8 7 5 36 36 H 1.07998 * 120.01886 * 0.02562 * 20 19 18 37 37 H 1.07994 * 119.89676 * 180.23173 * 21 20 19 38 38 H 1.07999 * 119.88517 * 179.69583 * 22 21 20 39 39 H 1.09003 * 109.47332 * 59.99255 * 25 24 23 40 40 H 1.09000 * 109.47451 * 179.97438 * 25 24 23 41 41 H 1.08999 * 109.46964 * 299.99624 * 25 24 23 42 42 H 1.07997 * 120.09885 * 179.97438 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4424 -0.0006 5 6 4.1883 1.3472 -1.1815 6 1 5.0133 0.6563 -1.2737 7 6 3.8206 2.1401 -2.2638 8 7 2.7676 2.9199 -2.1788 9 14 4.8250 2.0955 -3.8382 10 1 4.8236 0.7158 -4.3874 11 1 4.2297 3.0249 -4.8317 12 1 6.2208 2.5108 -3.5469 13 6 4.1794 1.5363 1.1625 14 8 3.5756 1.5291 2.2173 15 6 5.6582 1.6485 1.1552 16 7 6.4214 1.7637 0.0990 17 8 7.5867 1.8371 0.4271 18 6 7.6908 1.7652 1.7634 19 6 8.9398 1.8124 2.5533 20 6 8.8912 1.7319 3.9461 21 6 10.0591 1.7709 4.6798 22 6 11.2784 1.9007 4.0404 23 6 11.3360 1.9868 2.6561 24 8 12.5370 2.1149 2.0330 25 6 13.6985 2.1534 2.8646 26 6 10.1702 1.9434 1.9097 27 7 6.4656 1.6447 2.2372 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 1.9563 -0.8899 35 1 2.5115 3.4731 -2.9333 36 1 7.9404 1.6345 4.4488 37 1 10.0204 1.7047 5.7570 38 1 12.1889 1.9356 4.6201 39 1 13.7641 1.2301 3.4402 40 1 14.5876 2.2573 2.2425 41 1 13.6299 3.0019 3.5454 42 1 10.2137 2.0107 0.8327 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268456562.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:03 Heat of formation + Delta-G solvation = 14.691106 kcal Electronic energy + Delta-G solvation = -27630.900629 eV Core-core repulsion = 23579.706906 eV Total energy + Delta-G solvation = -4051.193723 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -46.63769 -41.11377 -40.65812 -38.60191 -37.38498 -36.59656 -34.73755 -34.23227 -33.24669 -31.86078 -30.91477 -28.26027 -27.99521 -27.27424 -25.47945 -25.42302 -23.65024 -22.86579 -22.37118 -21.38627 -20.14001 -19.34230 -18.96866 -18.15797 -17.75250 -17.20019 -16.95099 -16.76076 -16.61972 -16.40512 -15.97941 -15.81869 -15.51668 -14.94076 -14.83816 -14.50392 -14.23171 -13.98854 -13.73657 -13.44726 -13.37631 -13.06884 -12.97873 -12.88330 -12.80686 -12.65790 -12.51671 -12.23297 -12.18612 -12.12572 -11.98882 -11.89412 -11.52311 -11.40367 -11.23955 -10.88810 -9.91123 -9.64024 -9.28145 -8.36294 -6.32482 -0.64269 0.18251 0.35836 0.99592 1.38977 1.43781 1.50739 1.60312 1.89219 2.17268 2.26012 2.37347 2.68263 2.88134 3.02883 3.32046 3.78819 3.87000 4.07950 4.11418 4.17023 4.25097 4.28904 4.33864 4.46674 4.48371 4.49847 4.52799 4.71452 4.80026 4.85172 4.88793 4.95226 5.07521 5.16290 5.19979 5.31530 5.31995 5.36271 5.39034 5.58134 5.60551 5.83883 6.29313 6.39784 6.87527 7.02842 7.26663 7.66909 8.57706 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.016212 B = 0.003073 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.723309 B = 9110.811842 C =10585.731249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.122 4.122 3 C 0.100 3.900 4 N -0.414 5.414 5 C -0.344 4.344 6 H 0.089 0.911 7 C 0.020 3.980 8 N -0.884 5.884 9 Si 0.982 3.018 10 H -0.260 1.260 11 H -0.271 1.271 12 H -0.269 1.269 13 C 0.527 3.473 14 O -0.604 6.604 15 C 0.139 3.861 16 N -0.323 5.323 17 O 0.097 5.903 18 C 0.211 3.789 19 C -0.002 4.002 20 C -0.111 4.111 21 C -0.071 4.071 22 C -0.168 4.168 23 C 0.122 3.878 24 O -0.333 6.333 25 C 0.015 3.985 26 C -0.124 4.124 27 N -0.459 5.459 28 H 0.072 0.928 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.036 0.964 33 H 0.040 0.960 34 H 0.122 0.878 35 H 0.280 0.720 36 H 0.131 0.869 37 H 0.171 0.829 38 H 0.171 0.829 39 H 0.072 0.928 40 H 0.116 0.884 41 H 0.071 0.929 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.274 -1.865 8.120 20.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.160 4.160 3 C -0.022 4.022 4 N -0.131 5.131 5 C -0.472 4.472 6 H 0.106 0.894 7 C -0.184 4.184 8 N -0.521 5.521 9 Si 0.804 3.196 10 H -0.184 1.184 11 H -0.196 1.196 12 H -0.194 1.194 13 C 0.313 3.687 14 O -0.490 6.490 15 C -0.134 4.134 16 N -0.026 5.026 17 O 0.028 5.972 18 C -0.007 4.007 19 C -0.004 4.004 20 C -0.132 4.132 21 C -0.089 4.089 22 C -0.187 4.187 23 C 0.076 3.924 24 O -0.246 6.246 25 C -0.079 4.079 26 C -0.144 4.144 27 N -0.192 5.192 28 H 0.091 0.909 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.139 0.861 35 H 0.090 0.910 36 H 0.149 0.851 37 H 0.188 0.812 38 H 0.189 0.811 39 H 0.090 0.910 40 H 0.134 0.866 41 H 0.090 0.910 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 18.094 -1.747 7.783 19.774 hybrid contribution 0.214 0.159 -0.622 0.676 sum 18.308 -1.588 7.161 19.722 Atomic orbital electron populations 1.21589 0.93025 1.02469 1.02007 1.21689 0.97682 0.96375 1.00300 1.22044 0.79116 0.97487 1.03584 1.43541 1.06250 1.58952 1.04398 1.19610 1.15867 1.22978 0.88756 0.89381 1.26321 0.96357 0.93023 1.02741 1.69583 1.24119 1.24823 1.33538 0.85168 0.78676 0.79144 0.76619 1.18417 1.19572 1.19414 1.17267 0.82771 0.83301 0.85334 1.90601 1.68207 1.58207 1.31975 1.25457 0.98718 1.05297 0.83925 1.75490 0.88875 1.16305 1.21933 1.85440 1.22718 1.64356 1.24722 1.26954 0.94813 0.96923 0.81961 1.16964 0.84810 1.06562 0.92087 1.21305 1.00905 1.00033 0.90914 1.21240 0.89836 0.96058 1.01757 1.21869 1.00783 1.03503 0.92539 1.18749 0.85408 0.96683 0.91511 1.86090 1.13231 1.87890 1.37430 1.23442 0.85000 1.02840 0.96649 1.20440 0.88874 1.03846 1.01270 1.72136 0.99329 1.19496 1.28252 0.90866 0.92690 0.92200 0.92622 0.94547 0.94138 0.86056 0.90981 0.85103 0.81174 0.81119 0.90975 0.86565 0.91022 0.84040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.46 9.91 71.98 0.71 -3.74 16 2 C -0.12 -5.24 6.24 30.59 0.19 -5.05 16 3 C 0.10 5.05 5.08 86.38 0.44 5.49 16 4 N -0.41 -22.92 2.52 -638.35 -1.61 -24.53 16 5 C -0.34 -18.60 7.41 84.14 0.62 -17.98 16 6 H 0.09 4.80 6.77 -2.91 -0.02 4.78 16 7 C 0.02 1.05 5.41 84.98 0.46 1.51 16 8 N -0.88 -46.80 10.77 21.69 0.23 -46.57 16 9 Si 0.98 41.16 29.56 68.60 2.03 43.19 16 10 H -0.26 -10.39 7.11 99.48 0.71 -9.68 16 11 H -0.27 -10.81 7.11 99.48 0.71 -10.11 16 12 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 13 C 0.53 30.02 7.65 86.92 0.67 30.68 16 14 O -0.60 -36.36 16.66 -3.83 -0.06 -36.42 16 15 C 0.14 7.17 7.71 137.31 1.06 8.23 16 16 N -0.32 -15.65 9.35 -57.85 -0.54 -16.19 16 17 O 0.10 3.95 11.11 69.42 0.77 4.72 16 18 C 0.21 7.98 8.00 87.31 0.70 8.68 16 19 C 0.00 -0.05 5.87 -20.11 -0.12 -0.17 16 20 C -0.11 -2.64 9.70 22.53 0.22 -2.42 16 21 C -0.07 -1.08 10.03 22.22 0.22 -0.86 16 22 C -0.17 -2.25 9.03 22.42 0.20 -2.04 16 23 C 0.12 2.29 6.68 22.47 0.15 2.44 16 24 O -0.33 -5.65 10.49 -92.47 -0.97 -6.62 16 25 C 0.01 0.10 9.81 113.37 1.11 1.22 16 26 C -0.12 -2.97 9.67 22.63 0.22 -2.75 16 27 N -0.46 -21.07 11.27 -302.46 -3.41 -24.48 16 28 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.05 2.42 8.14 -2.38 -0.02 2.41 16 32 H 0.04 1.63 8.14 -2.39 -0.02 1.61 16 33 H 0.04 2.12 7.36 -2.39 -0.02 2.10 16 34 H 0.12 6.38 5.19 -2.39 -0.01 6.37 16 35 H 0.28 13.79 8.31 -92.71 -0.77 13.02 16 36 H 0.13 3.39 7.87 -2.91 -0.02 3.36 16 37 H 0.17 1.40 8.06 -2.91 -0.02 1.38 16 38 H 0.17 0.98 6.28 -2.91 -0.02 0.96 16 39 H 0.07 0.31 7.66 -2.39 -0.02 0.29 16 40 H 0.12 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.07 0.31 7.66 -2.39 -0.02 0.29 16 42 H 0.14 3.35 7.94 -2.91 -0.02 3.33 16 Total: -1.00 -72.47 363.17 4.36 -68.11 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 1.06 Total: 15.55 kcal Atomic # 6 Polarization: 16.37 SS G_CDS: 6.86 Total: 23.23 kcal Atomic # 7 Polarization: -106.44 SS G_CDS: -5.32 Total: -111.76 kcal Atomic # 8 Polarization: -38.06 SS G_CDS: -0.26 Total: -38.33 kcal Atomic # 14 Polarization: 41.16 SS G_CDS: 2.03 Total: 43.19 kcal Total: -72.47 4.36 -68.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268456562.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.806 kcal (2) G-P(sol) polarization free energy of solvation -72.474 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.331 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.360 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds