Wall clock time and date at job start Tue Mar 31 2020 16:00:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40160 * 125.97629 * 180.16795 * 4 3 2 6 6 C 1.34774 * 119.99582 * 0.31868 * 5 4 3 7 7 O 1.21287 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99641 * 179.97438 * 6 5 4 9 9 O 1.42900 * 109.46929 * 180.02562 * 8 6 5 10 10 C 1.35991 * 116.99801 * 180.02562 * 9 8 6 11 11 C 1.38564 * 120.07653 * 359.97438 * 10 9 8 12 12 C 1.38234 * 120.00239 * 180.02562 * 11 10 9 13 13 C 1.38252 * 120.14835 * 0.02562 * 12 11 10 14 14 C 1.38246 * 120.14659 * 0.02562 * 13 12 11 15 15 C 1.38567 * 119.99471 * 359.71684 * 14 13 12 16 16 O 1.35997 * 120.07066 * 180.27929 * 15 14 13 17 17 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46500 * 125.97897 * 359.96594 * 18 2 1 20 20 C 1.50698 * 109.46965 * 89.99833 * 19 18 2 21 21 H 1.08000 * 120.00464 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99358 * 180.02562 * 20 19 18 23 23 N 1.31506 * 120.00418 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99496 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47006 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.46890 * 120.00230 * 24 22 20 27 27 H 1.48501 * 109.46779 * 239.99778 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 32 32 H 0.96997 * 120.00211 * 180.31836 * 5 4 3 33 33 H 1.08995 * 109.46887 * 299.99916 * 8 6 5 34 34 H 1.08992 * 109.46796 * 60.00190 * 8 6 5 35 35 H 1.08004 * 119.99751 * 359.97438 * 11 10 9 36 36 H 1.08003 * 119.92841 * 179.97438 * 12 11 10 37 37 H 1.07994 * 119.93295 * 179.97438 * 13 12 11 38 38 H 1.07997 * 120.00253 * 180.02562 * 14 13 12 39 39 H 0.96701 * 114.00152 * 270.27389 * 16 15 14 40 40 H 1.08994 * 109.46840 * 210.00162 * 19 18 2 41 41 H 1.09004 * 109.46443 * 329.99889 * 19 18 2 42 42 H 0.96998 * 120.00265 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7735 1.4748 0.0080 6 6 4.6367 2.8156 0.0157 7 8 3.5302 3.3124 0.0193 8 6 5.8587 3.6977 0.0211 9 8 5.4563 5.0688 0.0296 10 6 6.4452 6.0024 0.0347 11 6 7.7732 5.6072 0.0323 12 6 8.7772 6.5574 0.0381 13 6 8.4596 7.9030 0.0469 14 6 7.1367 8.3041 0.0504 15 6 6.1255 7.3567 0.0393 16 8 4.8235 7.7497 0.0370 17 7 3.6337 -0.6577 -0.0036 18 7 2.3016 -1.0910 -0.0059 19 6 1.8500 -2.4847 -0.0128 20 6 1.6945 -2.9553 -1.4359 21 1 1.9108 -2.2836 -2.2535 22 6 1.2760 -4.2434 -1.6941 23 7 1.0121 -5.0611 -0.6985 24 14 1.0838 -4.8270 -3.4582 25 1 1.4410 -3.7241 -4.3861 26 1 1.9823 -5.9849 -3.6971 27 1 -0.3242 -5.2362 -3.6935 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1210 -0.0006 32 1 5.6584 1.0776 0.0055 33 1 6.4538 3.4885 0.9100 34 1 6.4541 3.4989 -0.8699 35 1 8.0240 4.5567 0.0266 36 1 9.8120 6.2481 0.0365 37 1 9.2467 8.6424 0.0518 38 1 6.8913 9.3558 0.0569 39 1 4.4447 7.8607 0.9198 40 1 2.5849 -3.1072 0.4976 41 1 0.8916 -2.5584 0.5012 42 1 0.7173 -5.9671 -0.8802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271059970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:35 Heat of formation + Delta-G solvation = -3.448387 kcal Electronic energy + Delta-G solvation = -26618.884431 eV Core-core repulsion = 22566.904120 eV Total energy + Delta-G solvation = -4051.980310 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -41.00462 -40.61578 -39.39049 -37.88348 -36.78430 -34.93318 -33.43929 -31.62041 -31.00769 -30.73434 -30.19199 -28.51373 -26.56996 -26.35397 -23.55423 -22.89661 -22.63924 -21.40017 -19.92877 -19.42381 -18.98524 -18.01427 -17.04210 -16.77083 -16.68487 -16.27754 -16.06107 -15.83081 -15.33130 -15.02360 -14.79589 -14.45462 -14.35254 -14.15858 -13.93455 -13.18119 -12.96105 -12.73028 -12.51000 -12.48316 -12.35996 -12.18277 -11.83819 -11.67972 -11.49837 -11.43644 -11.09973 -10.89333 -10.87679 -10.49205 -10.28293 -10.00323 -9.65442 -9.56025 -9.27634 -8.67643 -8.51803 -8.00309 -7.52513 -6.28482 -4.36181 0.80623 0.96218 2.11355 2.16600 2.82790 3.13892 3.18545 3.23762 3.26648 3.33162 3.62307 3.79364 3.88216 4.26725 4.32768 4.47310 4.56593 4.60348 4.68283 4.83869 4.95010 5.05304 5.15314 5.39160 5.43105 5.65874 5.78622 5.85809 5.89659 6.05316 6.07796 6.16110 6.24850 6.43774 6.48364 6.64152 6.83226 6.89628 7.01511 7.34313 7.45197 7.56204 7.64546 7.85535 8.00193 8.10142 8.58559 8.72026 9.30485 10.78837 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.025684 B = 0.001990 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.911607 B =14064.460574 C =14494.342543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.093 3.907 3 C -0.290 4.290 4 C 0.263 3.737 5 N -0.627 5.627 6 C 0.520 3.480 7 O -0.489 6.489 8 C 0.045 3.955 9 O -0.277 6.277 10 C 0.106 3.894 11 C -0.198 4.198 12 C -0.088 4.088 13 C -0.143 4.143 14 C -0.108 4.108 15 C 0.079 3.921 16 O -0.485 6.485 17 N -0.318 5.318 18 N -0.315 5.315 19 C 0.258 3.742 20 C -0.536 4.536 21 H 0.065 0.935 22 C 0.065 3.935 23 N -0.891 5.891 24 Si 0.906 3.094 25 H -0.271 1.271 26 H -0.281 1.281 27 H -0.280 1.280 28 H 0.071 0.929 29 H 0.083 0.917 30 H 0.076 0.924 31 H 0.160 0.840 32 H 0.411 0.589 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.389 0.611 40 H 0.053 0.947 41 H 0.055 0.945 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.512 22.646 4.580 26.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.038 4.038 3 C -0.321 4.321 4 C 0.011 3.989 5 N -0.276 5.276 6 C 0.303 3.697 7 O -0.360 6.360 8 C -0.034 4.034 9 O -0.189 6.189 10 C 0.059 3.941 11 C -0.217 4.217 12 C -0.106 4.106 13 C -0.162 4.162 14 C -0.126 4.126 15 C 0.033 3.967 16 O -0.294 6.294 17 N -0.149 5.149 18 N -0.098 5.098 19 C 0.140 3.860 20 C -0.575 4.575 21 H 0.083 0.917 22 C -0.138 4.138 23 N -0.529 5.529 24 Si 0.733 3.267 25 H -0.196 1.196 26 H -0.206 1.206 27 H -0.206 1.206 28 H 0.090 0.910 29 H 0.102 0.898 30 H 0.095 0.905 31 H 0.177 0.823 32 H 0.247 0.753 33 H 0.115 0.885 34 H 0.115 0.885 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.154 0.846 39 H 0.244 0.756 40 H 0.071 0.929 41 H 0.073 0.927 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.167 21.677 4.015 25.679 hybrid contribution 0.183 -0.223 -0.444 0.530 sum 13.351 21.454 3.571 25.520 Atomic orbital electron populations 1.20391 0.87802 1.03962 1.02605 1.21076 0.94997 0.87060 1.00675 1.21263 0.89703 0.99905 1.21222 1.18884 0.86900 0.89548 1.03580 1.42162 1.07913 1.04471 1.73081 1.19854 0.90559 0.81614 0.77650 1.90715 1.26177 1.73491 1.45636 1.22398 0.95724 0.81006 1.04271 1.86239 1.31062 1.13334 1.88288 1.19557 0.87665 0.88911 0.97921 1.21243 0.91330 1.00969 1.08156 1.20992 0.99123 0.92671 0.97811 1.20981 0.95865 0.96116 1.03196 1.21302 0.92089 0.99466 0.99780 1.17792 0.85018 0.87948 1.05897 1.84919 1.21865 1.89136 1.33471 1.77250 1.00099 1.08307 1.29218 1.49017 1.00875 1.07850 1.52015 1.19718 0.96034 0.71233 0.99005 1.21361 1.46772 0.98008 0.91348 0.91665 1.24933 0.94656 0.96045 0.98174 1.69923 1.44879 1.06993 1.31102 0.86300 0.77901 0.78793 0.83703 1.19564 1.20648 1.20609 0.91008 0.89843 0.90532 0.82299 0.75327 0.88514 0.88455 0.84809 0.85331 0.85370 0.84620 0.75557 0.92949 0.92705 0.92277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.53 9.89 36.01 0.36 -1.17 16 2 C 0.09 1.96 6.92 -82.28 -0.57 1.39 16 3 C -0.29 -5.96 9.52 -39.83 -0.38 -6.34 16 4 C 0.26 5.25 8.11 -154.38 -1.25 4.00 16 5 N -0.63 -9.17 5.45 -11.13 -0.06 -9.23 16 6 C 0.52 7.35 7.87 -10.98 -0.09 7.26 16 7 O -0.49 -8.98 13.63 -14.36 -0.20 -9.18 16 8 C 0.05 0.43 5.22 36.01 0.19 0.62 16 9 O -0.28 -3.43 9.45 -47.34 -0.45 -3.88 16 10 C 0.11 1.10 6.70 -39.12 -0.26 0.84 16 11 C -0.20 -1.54 9.04 -39.46 -0.36 -1.90 16 12 C -0.09 -0.58 10.04 -39.58 -0.40 -0.97 16 13 C -0.14 -0.94 10.04 -39.57 -0.40 -1.33 16 14 C -0.11 -0.84 9.98 -39.46 -0.39 -1.23 16 15 C 0.08 0.80 6.72 -39.12 -0.26 0.54 16 16 O -0.48 -5.14 13.29 -34.23 -0.45 -5.60 16 17 N -0.32 -7.20 12.59 31.44 0.40 -6.81 16 18 N -0.32 -7.40 3.59 -58.33 -0.21 -7.61 16 19 C 0.26 6.54 5.81 -5.19 -0.03 6.51 16 20 C -0.54 -14.66 9.39 -34.44 -0.32 -14.98 16 21 H 0.07 1.85 7.81 -52.49 -0.41 1.44 16 22 C 0.07 1.77 5.46 -17.82 -0.10 1.67 16 23 N -0.89 -24.84 13.29 55.43 0.74 -24.10 16 24 Si 0.91 20.99 29.54 -169.99 -5.02 15.97 16 25 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 26 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 29 H 0.08 1.52 7.71 -51.93 -0.40 1.12 16 30 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.16 3.22 5.92 -52.49 -0.31 2.91 16 32 H 0.41 4.47 8.82 -40.82 -0.36 4.11 16 33 H 0.10 0.61 7.66 -51.93 -0.40 0.21 16 34 H 0.10 0.67 7.66 -51.93 -0.40 0.27 16 35 H 0.13 0.73 6.30 -52.48 -0.33 0.40 16 36 H 0.13 0.53 8.06 -52.48 -0.42 0.11 16 37 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 38 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.39 2.42 9.06 45.56 0.41 2.84 16 40 H 0.05 1.41 8.14 -51.93 -0.42 0.99 16 41 H 0.06 1.38 7.65 -51.93 -0.40 0.98 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 368.37 15.07 5.55 5.55 Total: -1.00 -35.75 368.37 -8.23 -43.98 By element: Atomic # 1 Polarization: 10.26 SS G_CDS: -4.26 Total: 5.99 kcal Atomic # 6 Polarization: -0.84 SS G_CDS: -4.26 Total: -5.10 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.86 Total: -47.75 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: -1.10 Total: -18.65 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -35.75 -8.23 -43.98 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271059970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.534 kcal (2) G-P(sol) polarization free energy of solvation -35.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.233 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.448 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds