Wall clock time and date at job start Tue Mar 31 2020 16:00:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 C 1.40415 * 107.86655 * 179.84998 * 3 2 1 5 5 N 1.40160 * 125.97629 * 180.16795 * 4 3 2 6 6 C 1.34774 * 119.99582 * 0.31868 * 5 4 3 7 7 O 1.21287 * 120.00652 * 0.02562 * 6 5 4 8 8 C 1.50709 * 119.99641 * 179.97438 * 6 5 4 9 9 O 1.42900 * 109.46929 * 180.02562 * 8 6 5 10 10 C 1.35991 * 116.99801 * 180.02562 * 9 8 6 11 11 C 1.38564 * 120.07653 * 359.97438 * 10 9 8 12 12 C 1.38234 * 120.00239 * 180.02562 * 11 10 9 13 13 C 1.38252 * 120.14835 * 0.02562 * 12 11 10 14 14 C 1.38246 * 120.14659 * 0.02562 * 13 12 11 15 15 C 1.38567 * 119.99471 * 359.71684 * 14 13 12 16 16 O 1.35997 * 120.07066 * 180.27929 * 15 14 13 17 17 N 1.31221 * 108.05031 * 0.41656 * 4 3 2 18 18 N 1.34973 * 126.06634 * 180.31071 * 2 1 3 19 19 C 1.46500 * 125.97897 * 359.96594 * 18 2 1 20 20 C 1.50698 * 109.46965 * 89.99833 * 19 18 2 21 21 H 1.08000 * 120.00464 * 0.02562 * 20 19 18 22 22 C 1.37880 * 119.99358 * 180.02562 * 20 19 18 23 23 N 1.31506 * 120.00418 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99496 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47006 * 0.02562 * 24 22 20 26 26 H 1.48494 * 109.46890 * 120.00230 * 24 22 20 27 27 H 1.48501 * 109.46779 * 239.99778 * 24 22 20 28 28 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 29 29 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 30 30 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 31 31 H 1.08000 * 126.06978 * 359.96350 * 3 2 1 32 32 H 0.96997 * 120.00211 * 180.31836 * 5 4 3 33 33 H 1.08995 * 109.46887 * 299.99916 * 8 6 5 34 34 H 1.08992 * 109.46796 * 60.00190 * 8 6 5 35 35 H 1.08004 * 119.99751 * 359.97438 * 11 10 9 36 36 H 1.08003 * 119.92841 * 179.97438 * 12 11 10 37 37 H 1.07994 * 119.93295 * 179.97438 * 13 12 11 38 38 H 1.07997 * 120.00253 * 180.02562 * 14 13 12 39 39 H 0.96701 * 114.00152 * 270.27389 * 16 15 14 40 40 H 1.08994 * 109.46840 * 210.00162 * 19 18 2 41 41 H 1.09004 * 109.46443 * 329.99889 * 19 18 2 42 42 H 0.96998 * 120.00265 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 6 3.6371 0.6545 0.0035 5 7 4.7735 1.4748 0.0080 6 6 4.6367 2.8156 0.0157 7 8 3.5302 3.3124 0.0193 8 6 5.8587 3.6977 0.0211 9 8 5.4563 5.0688 0.0296 10 6 6.4452 6.0024 0.0347 11 6 7.7732 5.6072 0.0323 12 6 8.7772 6.5574 0.0381 13 6 8.4596 7.9030 0.0469 14 6 7.1367 8.3041 0.0504 15 6 6.1255 7.3567 0.0393 16 8 4.8235 7.7497 0.0370 17 7 3.6337 -0.6577 -0.0036 18 7 2.3016 -1.0910 -0.0059 19 6 1.8500 -2.4847 -0.0128 20 6 1.6945 -2.9553 -1.4359 21 1 1.9108 -2.2836 -2.2535 22 6 1.2760 -4.2434 -1.6941 23 7 1.0121 -5.0611 -0.6985 24 14 1.0838 -4.8270 -3.4582 25 1 1.4410 -3.7241 -4.3861 26 1 1.9823 -5.9849 -3.6971 27 1 -0.3242 -5.2362 -3.6935 28 1 -0.3633 -0.0056 1.0277 29 1 -0.3633 -0.8872 -0.5186 30 1 -0.3633 0.8928 -0.5090 31 1 1.9719 2.1210 -0.0006 32 1 5.6584 1.0776 0.0055 33 1 6.4538 3.4885 0.9100 34 1 6.4541 3.4989 -0.8699 35 1 8.0240 4.5567 0.0266 36 1 9.8120 6.2481 0.0365 37 1 9.2467 8.6424 0.0518 38 1 6.8913 9.3558 0.0569 39 1 4.4447 7.8607 0.9198 40 1 2.5849 -3.1072 0.4976 41 1 0.8916 -2.5584 0.5012 42 1 0.7173 -5.9671 -0.8802 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271059970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:00:32 Heat of formation + Delta-G solvation = -27.965014 kcal Electronic energy + Delta-G solvation = -26619.947552 eV Core-core repulsion = 22566.904120 eV Total energy + Delta-G solvation = -4053.043431 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -42.38004 -41.52449 -40.53991 -38.69073 -37.41255 -36.39381 -35.34985 -33.19486 -32.69142 -31.32163 -30.98103 -29.45476 -28.28446 -27.90315 -25.10750 -23.91647 -23.35287 -22.54256 -21.36849 -20.83513 -19.78099 -18.82260 -18.71446 -18.07192 -17.67488 -17.55296 -17.12153 -16.86674 -16.53393 -16.31700 -15.99806 -15.59540 -15.36983 -15.33449 -14.90500 -14.70576 -14.35416 -13.87589 -13.82465 -13.69473 -13.55759 -13.31020 -13.15798 -13.01994 -12.85193 -12.70511 -12.38199 -12.27865 -12.16197 -12.08574 -11.60450 -11.50984 -11.38949 -10.96793 -10.74658 -9.82420 -9.63468 -9.20474 -9.13780 -8.34344 -6.51685 0.25670 0.38752 0.82253 1.02096 1.31285 1.36289 1.38746 1.50924 1.93080 2.11585 2.33187 2.57368 2.69835 2.95635 3.30232 3.34130 3.82500 3.92651 3.97559 4.04841 4.10938 4.12132 4.33904 4.43029 4.47645 4.60826 4.71705 4.74675 4.85394 4.92882 4.94687 4.97591 5.10261 5.22084 5.24884 5.36187 5.52599 5.53870 5.75060 5.79465 5.86904 6.12270 6.22374 6.26860 6.60473 6.87045 6.89165 7.03741 7.19401 8.71990 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.025684 B = 0.001990 C = 0.001931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.911607 B =14064.460574 C =14494.342543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.089 3.911 3 C -0.302 4.302 4 C 0.273 3.727 5 N -0.615 5.615 6 C 0.520 3.480 7 O -0.535 6.535 8 C 0.053 3.947 9 O -0.312 6.312 10 C 0.079 3.921 11 C -0.198 4.198 12 C -0.088 4.088 13 C -0.140 4.140 14 C -0.114 4.114 15 C 0.050 3.950 16 O -0.508 6.508 17 N -0.352 5.352 18 N -0.341 5.341 19 C 0.275 3.725 20 C -0.553 4.553 21 H 0.049 0.951 22 C 0.023 3.977 23 N -0.917 5.917 24 Si 0.971 3.029 25 H -0.275 1.275 26 H -0.273 1.273 27 H -0.268 1.268 28 H 0.094 0.906 29 H 0.068 0.932 30 H 0.100 0.900 31 H 0.163 0.837 32 H 0.430 0.570 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.159 0.841 36 H 0.158 0.842 37 H 0.155 0.845 38 H 0.149 0.851 39 H 0.401 0.599 40 H 0.027 0.973 41 H 0.053 0.947 42 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.554 23.697 4.017 28.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.042 4.042 3 C -0.333 4.333 4 C 0.019 3.981 5 N -0.267 5.267 6 C 0.306 3.694 7 O -0.409 6.409 8 C -0.025 4.025 9 O -0.225 6.225 10 C 0.033 3.967 11 C -0.216 4.216 12 C -0.106 4.106 13 C -0.158 4.158 14 C -0.133 4.133 15 C 0.005 3.995 16 O -0.320 6.320 17 N -0.182 5.182 18 N -0.123 5.123 19 C 0.156 3.844 20 C -0.591 4.591 21 H 0.067 0.933 22 C -0.178 4.178 23 N -0.555 5.555 24 Si 0.795 3.205 25 H -0.199 1.199 26 H -0.199 1.199 27 H -0.192 1.192 28 H 0.112 0.888 29 H 0.087 0.913 30 H 0.119 0.881 31 H 0.180 0.820 32 H 0.269 0.731 33 H 0.154 0.846 34 H 0.148 0.852 35 H 0.176 0.824 36 H 0.176 0.824 37 H 0.173 0.827 38 H 0.166 0.834 39 H 0.258 0.742 40 H 0.045 0.955 41 H 0.070 0.930 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 15.249 22.743 3.470 27.601 hybrid contribution -0.366 -0.389 -0.214 0.575 sum 14.883 22.354 3.256 27.052 Atomic orbital electron populations 1.20511 0.85373 1.04393 1.04176 1.21734 0.96699 0.86434 0.99290 1.21430 0.90242 0.99846 1.21781 1.19224 0.88553 0.89207 1.01074 1.42256 1.07372 1.04429 1.72668 1.20821 0.91635 0.81343 0.75586 1.90688 1.28504 1.74151 1.47550 1.22512 0.93099 0.79321 1.07588 1.86164 1.32826 1.14420 1.89122 1.19799 0.88408 0.88557 0.99889 1.21566 0.90293 1.02637 1.07133 1.21411 1.00324 0.92443 0.96448 1.21378 0.95855 0.97051 1.01560 1.21527 0.92324 0.99807 0.99596 1.18207 0.85122 0.88752 1.07398 1.84861 1.22836 1.89321 1.34941 1.77170 1.00051 1.09698 1.31312 1.48809 1.01724 1.07536 1.54276 1.19275 0.95023 0.72302 0.97813 1.21455 1.47525 0.98371 0.91742 0.93306 1.25722 0.93959 0.95905 1.02218 1.69998 1.45031 1.07459 1.33018 0.85309 0.78479 0.78090 0.78600 1.19941 1.19881 1.19248 0.88787 0.91272 0.88101 0.81965 0.73065 0.84650 0.85228 0.82368 0.82409 0.82726 0.83360 0.74188 0.95496 0.92967 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.93 9.89 71.24 0.70 -2.23 16 2 C 0.09 3.78 6.92 41.38 0.29 4.07 16 3 C -0.30 -12.55 9.52 22.11 0.21 -12.34 16 4 C 0.27 10.94 8.11 133.33 1.08 12.02 16 5 N -0.62 -17.36 5.45 -307.50 -1.68 -19.03 16 6 C 0.52 14.16 7.87 87.66 0.69 14.85 16 7 O -0.54 -19.75 13.63 15.99 0.22 -19.53 16 8 C 0.05 0.87 5.22 71.24 0.37 1.25 16 9 O -0.31 -7.46 9.45 -67.04 -0.63 -8.09 16 10 C 0.08 1.55 6.70 22.57 0.15 1.70 16 11 C -0.20 -2.49 9.04 22.35 0.20 -2.29 16 12 C -0.09 -0.85 10.04 22.27 0.22 -0.62 16 13 C -0.14 -1.43 10.04 22.27 0.22 -1.20 16 14 C -0.11 -1.62 9.98 22.35 0.22 -1.39 16 15 C 0.05 1.01 6.72 22.57 0.15 1.16 16 16 O -0.51 -11.19 13.29 -79.65 -1.06 -12.25 16 17 N -0.35 -16.25 12.59 -54.44 -0.69 -16.93 16 18 N -0.34 -16.47 3.59 -338.45 -1.22 -17.68 16 19 C 0.27 14.45 5.81 85.63 0.50 14.95 16 20 C -0.55 -30.91 9.39 25.60 0.24 -30.67 16 21 H 0.05 2.84 7.81 -2.91 -0.02 2.81 16 22 C 0.02 1.26 5.46 84.66 0.46 1.72 16 23 N -0.92 -51.47 13.29 21.45 0.28 -51.19 16 24 Si 0.97 43.01 29.54 68.60 2.03 45.03 16 25 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 26 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 27 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 28 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 29 H 0.07 2.55 7.71 -2.39 -0.02 2.53 16 30 H 0.10 2.89 8.14 -2.38 -0.02 2.87 16 31 H 0.16 6.65 5.92 -2.91 -0.02 6.63 16 32 H 0.43 8.57 8.82 -92.71 -0.82 7.75 16 33 H 0.14 1.20 7.66 -2.39 -0.02 1.18 16 34 H 0.13 1.33 7.66 -2.39 -0.02 1.31 16 35 H 0.16 1.06 6.30 -2.91 -0.02 1.04 16 36 H 0.16 0.57 8.06 -2.91 -0.02 0.54 16 37 H 0.16 0.70 8.06 -2.91 -0.02 0.68 16 38 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 39 H 0.40 5.48 9.06 -74.06 -0.67 4.81 16 40 H 0.03 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.05 2.72 7.65 -2.39 -0.02 2.70 16 42 H 0.27 14.30 8.31 -92.71 -0.77 13.53 16 Total: -1.00 -80.24 368.37 2.58 -77.66 By element: Atomic # 1 Polarization: 21.45 SS G_CDS: -0.40 Total: 21.05 kcal Atomic # 6 Polarization: -4.75 SS G_CDS: 5.72 Total: 0.97 kcal Atomic # 7 Polarization: -101.54 SS G_CDS: -3.29 Total: -104.84 kcal Atomic # 8 Polarization: -38.40 SS G_CDS: -1.47 Total: -39.87 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -80.24 2.58 -77.66 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271059970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.698 kcal (2) G-P(sol) polarization free energy of solvation -80.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.663 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds