Wall clock time and date at job start Tue Mar 31 2020 16:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 109.47047 * 2 1 4 4 N 1.29909 * 124.84949 * 89.99842 * 3 2 1 5 5 C 1.36086 * 108.80363 * 179.97438 * 4 3 2 6 6 C 1.39525 * 133.73491 * 180.02562 * 5 4 3 7 7 C 1.38348 * 119.66905 * 179.97438 * 6 5 4 8 8 N 1.39867 * 119.87399 * 179.97438 * 7 6 5 9 9 C 1.34771 * 120.00392 * 144.85841 * 8 7 6 10 10 O 1.21387 * 120.00013 * 4.59507 * 9 8 7 11 11 C 1.49344 * 120.00211 * 184.59389 * 9 8 7 12 12 O 1.21356 * 120.00056 * 0.02562 * 11 9 8 13 13 N 1.34780 * 119.99993 * 180.02562 * 11 9 8 14 14 C 1.46494 * 119.99976 * 180.02562 * 13 11 9 15 15 C 1.52997 * 109.47075 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.47063 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00402 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00128 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99969 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00212 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47204 * 59.99717 * 20 18 16 22 22 H 1.48498 * 109.47310 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47006 * 299.99780 * 20 18 16 24 24 C 1.39362 * 120.25941 * 359.97438 * 7 6 5 25 25 C 1.37792 * 120.40157 * 0.02562 * 24 7 6 26 26 C 1.38723 * 119.97468 * 359.97438 * 25 24 7 27 27 O 1.34210 * 124.84753 * 269.95242 * 3 2 1 28 28 H 1.09000 * 109.47511 * 60.00555 * 1 2 3 29 29 H 1.09008 * 109.47437 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47656 * 300.00261 * 1 2 3 31 31 H 1.08998 * 109.47440 * 239.99422 * 2 1 3 32 32 H 1.09005 * 109.47068 * 119.99344 * 2 1 3 33 33 H 1.08005 * 120.16607 * 359.66823 * 6 5 4 34 34 H 0.97003 * 119.99777 * 324.85935 * 8 7 6 35 35 H 0.97005 * 119.99715 * 0.02562 * 13 11 9 36 36 H 1.09005 * 109.46833 * 300.00235 * 14 13 11 37 37 H 1.08993 * 109.47212 * 60.00268 * 14 13 11 38 38 H 1.08997 * 109.47374 * 300.00008 * 15 14 13 39 39 H 1.09007 * 109.47351 * 60.00016 * 15 14 13 40 40 H 0.96999 * 120.00054 * 180.02562 * 19 18 16 41 41 H 1.08000 * 119.80376 * 179.97438 * 24 7 6 42 42 H 1.08000 * 120.01420 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2797 2.1207 1.0661 5 6 2.7161 3.3536 0.6900 6 6 3.1187 4.4900 1.3922 7 6 3.5185 5.6180 0.6981 8 7 3.9224 6.7598 1.3978 9 6 4.9101 7.5356 0.9089 10 8 5.3921 7.2913 -0.1780 11 6 5.4115 8.6958 1.7044 12 8 4.9298 8.9399 2.7912 13 7 6.3988 9.4720 1.2152 14 6 6.8911 10.6097 1.9958 15 6 8.0024 11.3185 1.2190 16 6 8.5091 12.4885 2.0222 17 1 8.0817 12.7048 2.9901 18 6 9.5186 13.2831 1.5214 19 7 10.0396 13.0195 0.3429 20 14 10.1473 14.7330 2.5174 21 1 10.6829 14.2475 3.8145 22 1 11.2258 15.4210 1.7634 23 1 9.0333 15.6828 2.7662 24 6 3.5206 5.6211 -0.6955 25 6 3.1244 4.5026 -1.3959 26 6 2.7209 3.3643 -0.7133 27 8 2.2887 2.1435 -1.1014 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.1134 4.4909 2.4722 34 1 3.4915 6.9933 2.2349 35 1 6.7835 9.2771 0.3463 36 1 6.0731 11.3071 2.1769 37 1 7.2832 10.2542 2.9486 38 1 8.8204 10.6214 1.0374 39 1 7.6099 11.6741 0.2662 40 1 10.7500 13.5783 -0.0093 41 1 3.8337 6.5059 -1.2299 42 1 3.1288 4.5117 -2.4758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273093078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:22 Heat of formation + Delta-G solvation = -37.869168 kcal Electronic energy + Delta-G solvation = -26132.676214 eV Core-core repulsion = 22079.203307 eV Total energy + Delta-G solvation = -4053.472907 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.57815 -41.04278 -39.10628 -37.82993 -35.54681 -35.41976 -34.72903 -33.69125 -32.90724 -30.55469 -29.93435 -29.19320 -26.06752 -25.19574 -24.30487 -22.76518 -22.67128 -21.62229 -21.11459 -20.38676 -19.01142 -18.42712 -17.59202 -17.14684 -16.74093 -16.43710 -16.16519 -15.93131 -15.19920 -15.01859 -14.82146 -14.56606 -14.46270 -14.36523 -14.10005 -13.64713 -13.50905 -13.31853 -13.11142 -12.77979 -12.35123 -12.33423 -12.12362 -11.75002 -11.67725 -11.60117 -11.29237 -11.08145 -10.88079 -10.71835 -10.55966 -10.44645 -9.88782 -9.55488 -9.30813 -8.81302 -8.80355 -8.52132 -8.45315 -6.13199 -4.17249 0.32232 0.67210 1.46256 2.05155 2.08409 2.25460 3.12732 3.28732 3.32904 3.33709 3.35811 3.36891 3.66807 4.14493 4.35514 4.39735 4.51717 4.54253 4.56621 4.66912 4.88658 4.90493 4.94022 5.18190 5.21321 5.23743 5.38602 5.55082 5.62633 5.75075 5.77020 5.87035 5.93289 6.09881 6.16957 6.34115 6.48098 6.61152 6.79347 7.25183 7.35230 7.49396 7.52552 7.71811 7.83140 8.10048 8.24397 8.87974 9.47912 10.98126 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.045188 B = 0.001664 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.486824 B =16823.758697 C =17202.527992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.033 4.033 3 C 0.250 3.750 4 N -0.478 5.478 5 C 0.040 3.960 6 C -0.088 4.088 7 C 0.151 3.849 8 N -0.647 5.647 9 C 0.512 3.488 10 O -0.498 6.498 11 C 0.501 3.499 12 O -0.528 6.528 13 N -0.682 5.682 14 C 0.118 3.882 15 C 0.011 3.989 16 C -0.525 4.525 17 H 0.060 0.940 18 C 0.060 3.940 19 N -0.892 5.892 20 Si 0.899 3.101 21 H -0.275 1.275 22 H -0.287 1.287 23 H -0.275 1.275 24 C -0.090 4.090 25 C -0.073 4.073 26 C -0.004 4.004 27 O -0.213 6.213 28 H 0.061 0.939 29 H 0.076 0.924 30 H 0.065 0.935 31 H 0.098 0.902 32 H 0.110 0.890 33 H 0.143 0.857 34 H 0.426 0.574 35 H 0.411 0.589 36 H 0.065 0.935 37 H 0.065 0.935 38 H 0.026 0.974 39 H 0.026 0.974 40 H 0.264 0.736 41 H 0.160 0.840 42 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.899 -24.998 -3.223 31.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.071 4.071 3 C 0.039 3.961 4 N -0.208 5.208 5 C -0.072 4.072 6 C -0.110 4.110 7 C 0.056 3.944 8 N -0.295 5.295 9 C 0.294 3.706 10 O -0.371 6.371 11 C 0.280 3.720 12 O -0.406 6.406 13 N -0.333 5.333 14 C -0.003 4.003 15 C -0.027 4.027 16 C -0.564 4.564 17 H 0.078 0.922 18 C -0.142 4.142 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.201 1.201 22 H -0.212 1.212 23 H -0.201 1.201 24 C -0.110 4.110 25 C -0.092 4.092 26 C -0.054 4.054 27 O -0.104 6.104 28 H 0.080 0.920 29 H 0.095 0.905 30 H 0.084 0.916 31 H 0.116 0.884 32 H 0.129 0.871 33 H 0.161 0.839 34 H 0.265 0.735 35 H 0.247 0.753 36 H 0.083 0.917 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.044 0.956 40 H 0.073 0.927 41 H 0.177 0.823 42 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -18.742 -25.028 -2.720 31.386 hybrid contribution 0.543 1.051 -0.195 1.199 sum -18.199 -23.977 -2.915 30.242 Atomic orbital electron populations 1.21794 0.92599 1.03316 1.03211 1.20239 0.97225 0.83889 1.05740 1.26503 0.94926 0.96389 0.78326 1.70621 1.18307 1.02943 1.28935 1.19411 1.03567 0.93203 0.90996 1.19873 1.02200 0.88531 1.00377 1.17382 0.99363 0.86463 0.91233 1.43129 1.36000 1.23526 1.26821 1.20706 0.79510 0.83872 0.86484 1.90764 1.56338 1.69965 1.20061 1.19652 0.82290 0.83652 0.86449 1.90763 1.57865 1.71232 1.20700 1.46246 1.34731 1.29131 1.23147 1.21991 0.98364 0.84856 0.95130 1.19360 0.91984 0.95387 0.95928 1.20963 1.19485 1.11853 1.04112 0.92188 1.24997 0.96284 0.97860 0.95047 1.69947 1.26443 1.39272 1.17345 0.86549 0.78513 0.82280 0.80053 1.20094 1.21211 1.20086 1.21235 0.98326 0.99086 0.92327 1.19773 1.00431 0.88464 1.00532 1.20346 1.04237 0.86391 0.94449 1.84491 1.67930 1.21910 1.36106 0.91956 0.90545 0.91562 0.88364 0.87128 0.83943 0.73527 0.75261 0.91650 0.91671 0.95618 0.95606 0.92688 0.82256 0.84014 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.57 9.89 37.15 0.37 -0.21 16 2 C -0.03 -0.15 6.56 -27.89 -0.18 -0.34 16 3 C 0.25 2.34 7.49 -13.09 -0.10 2.24 16 4 N -0.48 -5.57 11.34 -8.71 -0.10 -5.67 16 5 C 0.04 0.48 7.23 -84.71 -0.61 -0.13 16 6 C -0.09 -0.96 10.01 -39.06 -0.39 -1.35 16 7 C 0.15 1.69 6.29 -83.73 -0.53 1.16 16 8 N -0.65 -7.24 5.32 -10.30 -0.05 -7.30 16 9 C 0.51 7.02 7.73 -11.64 -0.09 6.93 16 10 O -0.50 -7.47 13.89 5.46 0.08 -7.39 16 11 C 0.50 7.97 7.89 -11.63 -0.09 7.88 16 12 O -0.53 -9.33 16.48 5.49 0.09 -9.24 16 13 N -0.68 -11.61 5.55 -60.77 -0.34 -11.95 16 14 C 0.12 2.36 5.61 -4.05 -0.02 2.33 16 15 C 0.01 0.26 5.09 -27.89 -0.14 0.12 16 16 C -0.53 -14.16 9.11 -34.44 -0.31 -14.47 16 17 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 18 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 19 N -0.89 -25.69 13.29 55.43 0.74 -24.96 16 20 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 24 C -0.09 -0.99 8.67 -39.33 -0.34 -1.33 16 25 C -0.07 -0.73 10.05 -39.57 -0.40 -1.13 16 26 C 0.00 -0.05 7.43 -38.62 -0.29 -0.33 16 27 O -0.21 -2.26 10.77 3.45 0.04 -2.22 16 28 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 29 H 0.08 0.15 8.14 -51.92 -0.42 -0.28 16 30 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.10 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.11 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.14 1.31 8.06 -52.48 -0.42 0.89 16 34 H 0.43 4.05 8.30 -40.82 -0.34 3.71 16 35 H 0.41 6.61 7.94 -40.82 -0.32 6.28 16 36 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 39 H 0.03 0.65 8.14 -51.93 -0.42 0.22 16 40 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 41 H 0.16 1.78 6.20 -52.49 -0.33 1.46 16 42 H 0.14 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 369.89 15.07 5.57 5.57 Total: -1.00 -32.38 369.89 -7.40 -39.79 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -5.18 Total: 4.47 kcal Atomic # 6 Polarization: 6.17 SS G_CDS: -3.23 Total: 2.94 kcal Atomic # 7 Polarization: -50.11 SS G_CDS: 0.25 Total: -49.87 kcal Atomic # 8 Polarization: -19.06 SS G_CDS: 0.20 Total: -18.86 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -32.38 -7.40 -39.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273093078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.917 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.404 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds