Wall clock time and date at job start Tue Mar 31 2020 16:22:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50700 * 109.47047 * 2 1 4 4 N 1.29909 * 124.84949 * 89.99842 * 3 2 1 5 5 C 1.36086 * 108.80363 * 179.97438 * 4 3 2 6 6 C 1.39525 * 133.73491 * 180.02562 * 5 4 3 7 7 C 1.38348 * 119.66905 * 179.97438 * 6 5 4 8 8 N 1.39867 * 119.87399 * 179.97438 * 7 6 5 9 9 C 1.34771 * 120.00392 * 144.85841 * 8 7 6 10 10 O 1.21387 * 120.00013 * 4.59507 * 9 8 7 11 11 C 1.49344 * 120.00211 * 184.59389 * 9 8 7 12 12 O 1.21356 * 120.00056 * 0.02562 * 11 9 8 13 13 N 1.34780 * 119.99993 * 180.02562 * 11 9 8 14 14 C 1.46494 * 119.99976 * 180.02562 * 13 11 9 15 15 C 1.52997 * 109.47075 * 180.02562 * 14 13 11 16 16 C 1.50698 * 109.47063 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00402 * 0.02562 * 16 15 14 18 18 C 1.37881 * 120.00128 * 180.02562 * 16 15 14 19 19 N 1.31519 * 119.99969 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 120.00212 * 180.02562 * 18 16 15 21 21 H 1.48501 * 109.47204 * 59.99717 * 20 18 16 22 22 H 1.48498 * 109.47310 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47006 * 299.99780 * 20 18 16 24 24 C 1.39362 * 120.25941 * 359.97438 * 7 6 5 25 25 C 1.37792 * 120.40157 * 0.02562 * 24 7 6 26 26 C 1.38723 * 119.97468 * 359.97438 * 25 24 7 27 27 O 1.34210 * 124.84753 * 269.95242 * 3 2 1 28 28 H 1.09000 * 109.47511 * 60.00555 * 1 2 3 29 29 H 1.09008 * 109.47437 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47656 * 300.00261 * 1 2 3 31 31 H 1.08998 * 109.47440 * 239.99422 * 2 1 3 32 32 H 1.09005 * 109.47068 * 119.99344 * 2 1 3 33 33 H 1.08005 * 120.16607 * 359.66823 * 6 5 4 34 34 H 0.97003 * 119.99777 * 324.85935 * 8 7 6 35 35 H 0.97005 * 119.99715 * 0.02562 * 13 11 9 36 36 H 1.09005 * 109.46833 * 300.00235 * 14 13 11 37 37 H 1.08993 * 109.47212 * 60.00268 * 14 13 11 38 38 H 1.08997 * 109.47374 * 300.00008 * 15 14 13 39 39 H 1.09007 * 109.47351 * 60.00016 * 15 14 13 40 40 H 0.96999 * 120.00054 * 180.02562 * 19 18 16 41 41 H 1.08000 * 119.80376 * 179.97438 * 24 7 6 42 42 H 1.08000 * 120.01420 * 180.02562 * 25 24 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0322 1.4208 0.0000 4 7 2.2797 2.1207 1.0661 5 6 2.7161 3.3536 0.6900 6 6 3.1187 4.4900 1.3922 7 6 3.5185 5.6180 0.6981 8 7 3.9224 6.7598 1.3978 9 6 4.9101 7.5356 0.9089 10 8 5.3921 7.2913 -0.1780 11 6 5.4115 8.6958 1.7044 12 8 4.9298 8.9399 2.7912 13 7 6.3988 9.4720 1.2152 14 6 6.8911 10.6097 1.9958 15 6 8.0024 11.3185 1.2190 16 6 8.5091 12.4885 2.0222 17 1 8.0817 12.7048 2.9901 18 6 9.5186 13.2831 1.5214 19 7 10.0396 13.0195 0.3429 20 14 10.1473 14.7330 2.5174 21 1 10.6829 14.2475 3.8145 22 1 11.2258 15.4210 1.7634 23 1 9.0333 15.6828 2.7662 24 6 3.5206 5.6211 -0.6955 25 6 3.1244 4.5026 -1.3959 26 6 2.7209 3.3643 -0.7133 27 8 2.2887 2.1435 -1.1014 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 3.1134 4.4909 2.4722 34 1 3.4915 6.9933 2.2349 35 1 6.7835 9.2771 0.3463 36 1 6.0731 11.3071 2.1769 37 1 7.2832 10.2542 2.9486 38 1 8.8204 10.6214 1.0374 39 1 7.6099 11.6741 0.2662 40 1 10.7500 13.5783 -0.0093 41 1 3.8337 6.5059 -1.2299 42 1 3.1288 4.5117 -2.4758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273093078.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:22:21 Heat of formation + Delta-G solvation = -61.978152 kcal Electronic energy + Delta-G solvation = -26133.721658 eV Core-core repulsion = 22079.203307 eV Total energy + Delta-G solvation = -4054.518351 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.36728 -42.16784 -40.30297 -38.85355 -36.94992 -36.14906 -35.86581 -34.81465 -34.25603 -31.72711 -31.39737 -30.03273 -27.55057 -26.02234 -25.54226 -23.83261 -23.51923 -22.78738 -22.29476 -21.56584 -20.05943 -19.49297 -18.58304 -18.40497 -17.94507 -17.59782 -17.38470 -17.03860 -16.50221 -16.37451 -15.99973 -15.71308 -15.34561 -15.18282 -15.01952 -14.83071 -14.60850 -14.34565 -14.29627 -13.86634 -13.59959 -13.26289 -12.96145 -12.92634 -12.78943 -12.66150 -12.54279 -12.45022 -12.26916 -12.06710 -11.71205 -11.68632 -11.47750 -11.42202 -10.82131 -10.60340 -10.23837 -9.62680 -9.41136 -8.22668 -6.33690 -0.46648 -0.27908 0.34618 1.05604 1.28758 1.40464 1.44434 1.46093 1.54147 1.95903 2.34989 2.45256 2.47542 2.78341 3.12575 3.25996 3.35762 3.77940 3.85141 3.98128 4.09359 4.20285 4.23519 4.37801 4.39634 4.46085 4.56446 4.80793 4.82233 4.89863 4.94209 4.96042 4.99091 5.03435 5.05786 5.13691 5.32709 5.41830 5.47780 5.56020 5.73807 5.80992 6.13304 6.23510 6.47007 6.54190 6.77497 6.83719 7.35909 8.88906 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.045188 B = 0.001664 C = 0.001627 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 619.486824 B =16823.758697 C =17202.527992 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.033 4.033 3 C 0.258 3.742 4 N -0.508 5.508 5 C 0.022 3.978 6 C -0.088 4.088 7 C 0.143 3.857 8 N -0.630 5.630 9 C 0.521 3.479 10 O -0.511 6.511 11 C 0.507 3.493 12 O -0.543 6.543 13 N -0.684 5.684 14 C 0.137 3.863 15 C 0.018 3.982 16 C -0.546 4.546 17 H 0.065 0.935 18 C 0.007 3.993 19 N -0.927 5.927 20 Si 0.966 3.034 21 H -0.268 1.268 22 H -0.284 1.284 23 H -0.267 1.267 24 C -0.099 4.099 25 C -0.066 4.066 26 C -0.019 4.019 27 O -0.217 6.217 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.052 0.948 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.156 0.844 34 H 0.435 0.565 35 H 0.416 0.584 36 H 0.065 0.935 37 H 0.063 0.937 38 H 0.008 0.992 39 H 0.009 0.991 40 H 0.265 0.735 41 H 0.158 0.842 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.823 -26.171 -2.907 32.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.071 4.071 3 C 0.047 3.953 4 N -0.238 5.238 5 C -0.090 4.090 6 C -0.110 4.110 7 C 0.048 3.952 8 N -0.278 5.278 9 C 0.303 3.697 10 O -0.386 6.386 11 C 0.287 3.713 12 O -0.421 6.421 13 N -0.335 5.335 14 C 0.015 3.985 15 C -0.020 4.020 16 C -0.584 4.584 17 H 0.083 0.917 18 C -0.192 4.192 19 N -0.567 5.567 20 Si 0.790 3.210 21 H -0.193 1.193 22 H -0.209 1.209 23 H -0.192 1.192 24 C -0.118 4.118 25 C -0.085 4.085 26 C -0.069 4.069 27 O -0.109 6.109 28 H 0.076 0.924 29 H 0.120 0.880 30 H 0.071 0.929 31 H 0.140 0.860 32 H 0.142 0.858 33 H 0.173 0.827 34 H 0.275 0.725 35 H 0.253 0.747 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.026 0.974 39 H 0.028 0.972 40 H 0.074 0.926 41 H 0.175 0.825 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -19.702 -26.228 -2.385 32.891 hybrid contribution 0.743 1.267 -0.316 1.502 sum -18.959 -24.962 -2.701 31.462 Atomic orbital electron populations 1.21788 0.91782 1.04667 1.02302 1.20588 0.97708 0.81270 1.07523 1.27531 0.92868 0.97425 0.77503 1.70634 1.19950 1.03199 1.30023 1.19702 1.03929 0.93744 0.91607 1.19968 1.01788 0.88146 1.01055 1.17425 0.99988 0.86354 0.91429 1.42947 1.34954 1.23027 1.26912 1.20122 0.80038 0.83475 0.86022 1.90772 1.57092 1.70245 1.20458 1.19905 0.81429 0.83753 0.86229 1.90755 1.58191 1.71724 1.21466 1.46043 1.35404 1.28825 1.23232 1.21517 0.96989 0.85521 0.94496 1.19185 0.92611 0.94757 0.95444 1.21429 1.19671 1.12732 1.04615 0.91671 1.25888 0.96557 1.00722 0.96072 1.70067 1.27075 1.40557 1.18961 0.85485 0.78029 0.78842 0.78609 1.19273 1.20943 1.19193 1.21272 0.98840 0.99383 0.92328 1.19990 0.99188 0.87646 1.01669 1.20587 1.04749 0.87049 0.94517 1.84505 1.68000 1.21745 1.36671 0.92429 0.88048 0.92898 0.86006 0.85841 0.82663 0.72502 0.74685 0.91697 0.91861 0.97361 0.97222 0.92617 0.82497 0.81706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.84 9.89 71.98 0.71 -0.12 16 2 C -0.03 -0.24 6.56 29.85 0.20 -0.04 16 3 C 0.26 4.53 7.49 88.39 0.66 5.19 16 4 N -0.51 -11.52 11.34 -296.31 -3.36 -14.88 16 5 C 0.02 0.51 7.23 39.30 0.28 0.79 16 6 C -0.09 -1.86 10.01 22.61 0.23 -1.64 16 7 C 0.14 3.09 6.29 38.16 0.24 3.33 16 8 N -0.63 -13.54 5.32 -304.84 -1.62 -15.16 16 9 C 0.52 13.92 7.73 87.24 0.67 14.59 16 10 O -0.51 -15.02 13.89 -3.36 -0.05 -15.07 16 11 C 0.51 15.83 7.89 87.24 0.69 16.52 16 12 O -0.54 -18.74 16.48 -3.27 -0.05 -18.79 16 13 N -0.68 -23.21 5.55 -464.54 -2.58 -25.79 16 14 C 0.14 5.49 5.61 86.38 0.48 5.97 16 15 C 0.02 0.86 5.09 29.85 0.15 1.01 16 16 C -0.55 -29.55 9.11 25.60 0.23 -29.31 16 17 H 0.07 3.37 7.74 -2.91 -0.02 3.35 16 18 C 0.01 0.36 5.46 84.65 0.46 0.82 16 19 N -0.93 -54.02 13.29 21.45 0.28 -53.73 16 20 Si 0.97 42.79 29.54 68.60 2.03 44.81 16 21 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.66 16 23 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 24 C -0.10 -2.09 8.67 22.43 0.19 -1.89 16 25 C -0.07 -1.26 10.05 22.28 0.22 -1.04 16 26 C -0.02 -0.41 7.43 22.89 0.17 -0.24 16 27 O -0.22 -4.38 10.77 -10.58 -0.11 -4.50 16 28 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.10 0.10 8.14 -2.38 -0.02 0.08 16 30 H 0.05 0.45 8.14 -2.38 -0.02 0.43 16 31 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.16 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.43 7.79 8.30 -92.71 -0.77 7.02 16 35 H 0.42 13.44 7.94 -92.70 -0.74 12.70 16 36 H 0.06 2.60 8.14 -2.38 -0.02 2.58 16 37 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 38 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.01 0.49 8.14 -2.38 -0.02 0.47 16 40 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 41 H 0.16 3.42 6.20 -2.91 -0.02 3.40 16 42 H 0.17 2.27 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -68.95 369.89 -0.28 -69.23 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -0.42 Total: 19.95 kcal Atomic # 6 Polarization: 8.32 SS G_CDS: 5.60 Total: 13.93 kcal Atomic # 7 Polarization: -102.29 SS G_CDS: -7.27 Total: -109.56 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -0.21 Total: -38.36 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.81 kcal Total: -68.95 -0.28 -69.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273093078.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.249 kcal (2) G-P(sol) polarization free energy of solvation -68.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.702 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.276 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds