Wall clock time and date at job start Tue Mar 31 2020 16:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 110.53449 * 2 1 4 4 C 1.38364 * 119.85270 * 89.30212 * 3 2 1 5 5 C 1.37949 * 120.14577 * 179.97438 * 4 3 2 6 6 C 1.39575 * 119.85507 * 0.02562 * 5 4 3 7 7 C 1.47841 * 120.14825 * 179.72736 * 6 5 4 8 8 O 1.21550 * 120.00206 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00166 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00111 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47318 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47334 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00055 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00368 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99592 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00296 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47252 * 89.99959 * 16 14 12 18 18 H 1.48496 * 109.47127 * 210.00106 * 16 14 12 19 19 H 1.48503 * 109.46922 * 330.00161 * 16 14 12 20 20 C 1.39588 * 119.70982 * 0.02562 * 6 5 4 21 21 C 1.37951 * 119.84935 * 359.97438 * 20 6 5 22 22 N 1.47310 * 110.59906 * 122.83303 * 2 1 3 23 23 C 1.34868 * 106.44013 * 118.72978 * 22 2 1 24 24 O 1.21535 * 123.72810 * 179.97438 * 23 22 2 25 25 N 1.33790 * 112.49813 * 359.86412 * 23 22 2 26 26 C 1.34773 * 111.64689 * 0.08629 * 25 23 22 27 27 O 1.21229 * 127.15636 * 180.02562 * 26 25 23 28 28 H 1.08998 * 109.47378 * 59.99521 * 1 2 3 29 29 H 1.08998 * 109.46877 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46638 * 299.99477 * 1 2 3 31 31 H 1.08004 * 119.92502 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.07899 * 180.02562 * 5 4 3 33 33 H 0.97000 * 120.00217 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47205 * 299.99661 * 10 9 7 35 35 H 1.09002 * 109.47112 * 59.99295 * 10 9 7 36 36 H 1.08996 * 109.47298 * 299.99854 * 11 10 9 37 37 H 1.09002 * 109.47014 * 59.99958 * 11 10 9 38 38 H 0.96997 * 119.99965 * 180.02562 * 15 14 12 39 39 H 1.07994 * 120.07087 * 179.97438 * 20 6 5 40 40 H 1.08006 * 119.92607 * 180.02562 * 21 20 6 41 41 H 0.97003 * 126.68855 * 298.64394 * 22 2 1 42 42 H 0.97003 * 124.17781 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.2865 2.0614 1.2000 5 6 2.7708 3.3530 1.2070 6 6 3.0305 4.0043 0.0002 7 6 3.5439 5.3907 0.0001 8 8 3.7404 5.9662 1.0526 9 7 3.7931 6.0170 -1.1671 10 6 4.3014 7.3910 -1.1671 11 6 4.4980 7.8621 -2.6094 12 6 5.0202 9.2757 -2.6095 13 1 5.1948 9.7869 -1.6743 14 6 5.2750 9.9165 -3.8035 15 7 5.0619 9.2941 -4.9423 16 14 5.9230 11.6684 -3.8036 17 1 7.4077 11.6471 -3.7839 18 1 5.4542 12.3695 -5.0257 19 1 5.4222 12.3814 -2.6010 20 6 2.7974 3.3432 -1.2069 21 6 2.3129 2.0515 -1.1999 22 7 2.0483 -0.7476 1.1586 23 6 2.7646 -1.7759 0.6600 24 8 3.3357 -2.5976 1.3497 25 7 2.7744 -1.7918 -0.6777 26 6 2.0633 -0.7692 -1.1924 27 8 1.8865 -0.5172 -2.3649 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 2.0856 1.5561 2.1331 32 1 2.9487 3.8593 2.1443 33 1 3.6360 5.5581 -2.0070 34 1 3.5859 8.0431 -0.6660 35 1 5.2552 7.4257 -0.6407 36 1 5.2136 7.2100 -3.1103 37 1 3.5443 7.8274 -3.1362 38 1 5.2416 9.7447 -5.7822 39 1 2.9958 3.8417 -2.1441 40 1 2.1325 1.5386 -2.1331 41 1 1.9031 -0.5393 2.0949 42 1 3.2370 -2.4568 -1.2114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273139628.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:42 Heat of formation + Delta-G solvation = -60.551268 kcal Electronic energy + Delta-G solvation = -27022.698500 eV Core-core repulsion = 22968.242023 eV Total energy + Delta-G solvation = -4054.456477 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.11113 -40.18142 -39.23420 -38.46350 -36.81782 -35.01595 -34.93778 -32.97335 -32.09574 -31.35316 -30.33081 -29.27699 -25.94279 -25.03960 -23.73263 -23.55487 -22.53552 -21.40895 -20.98502 -20.21333 -18.89564 -18.00001 -17.41407 -17.14632 -16.56027 -16.49326 -16.27277 -15.62010 -15.48055 -15.03884 -14.96451 -14.71090 -14.51561 -14.48036 -14.24641 -13.67670 -13.47085 -13.32468 -13.13671 -12.99291 -12.56755 -12.33056 -12.13291 -11.69518 -11.33676 -11.22567 -11.06824 -10.89729 -10.69493 -10.66036 -10.39058 -10.14910 -9.93957 -9.55809 -9.31993 -9.27724 -9.20605 -8.60573 -8.40630 -6.12432 -4.15466 0.47744 1.02330 1.06509 1.86268 2.47168 2.48836 2.86813 3.27676 3.31872 3.33793 3.37127 3.51282 3.69157 3.77178 4.17910 4.39115 4.46315 4.65156 4.70075 4.84186 4.94226 4.99954 5.03536 5.21052 5.24778 5.37825 5.41591 5.49475 5.70363 5.94965 5.98565 6.08776 6.18659 6.28273 6.29495 6.36321 6.50500 6.66824 6.79628 6.81892 7.46537 7.56364 7.59742 7.84875 7.88681 8.22988 8.49608 8.90290 9.49584 10.99173 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023332 B = 0.002081 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.793575 B =13449.532763 C =14035.714777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.165 3.835 3 C -0.085 4.085 4 C -0.105 4.105 5 C -0.061 4.061 6 C -0.113 4.113 7 C 0.545 3.455 8 O -0.544 6.544 9 N -0.714 5.714 10 C 0.121 3.879 11 C 0.012 3.988 12 C -0.522 4.522 13 H 0.060 0.940 14 C 0.059 3.941 15 N -0.894 5.894 16 Si 0.897 3.103 17 H -0.279 1.279 18 H -0.286 1.286 19 H -0.272 1.272 20 C -0.081 4.081 21 C -0.115 4.115 22 N -0.716 5.716 23 C 0.708 3.292 24 O -0.540 6.540 25 N -0.678 5.678 26 C 0.538 3.462 27 O -0.453 6.453 28 H 0.089 0.911 29 H 0.072 0.928 30 H 0.084 0.916 31 H 0.127 0.873 32 H 0.141 0.859 33 H 0.397 0.603 34 H 0.059 0.941 35 H 0.059 0.941 36 H 0.023 0.977 37 H 0.023 0.977 38 H 0.262 0.738 39 H 0.136 0.864 40 H 0.146 0.854 41 H 0.442 0.558 42 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.761 -23.749 9.459 27.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.074 3.926 3 C -0.087 4.087 4 C -0.123 4.123 5 C -0.080 4.080 6 C -0.116 4.116 7 C 0.331 3.669 8 O -0.424 6.424 9 N -0.363 5.363 10 C -0.001 4.001 11 C -0.026 4.026 12 C -0.561 4.561 13 H 0.078 0.922 14 C -0.143 4.143 15 N -0.532 5.532 16 Si 0.725 3.275 17 H -0.205 1.205 18 H -0.211 1.211 19 H -0.197 1.197 20 C -0.099 4.099 21 C -0.133 4.133 22 N -0.382 5.382 23 C 0.407 3.593 24 O -0.413 6.413 25 N -0.349 5.349 26 C 0.323 3.677 27 O -0.321 6.321 28 H 0.108 0.892 29 H 0.091 0.909 30 H 0.103 0.897 31 H 0.145 0.855 32 H 0.159 0.841 33 H 0.232 0.768 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.072 0.928 39 H 0.154 0.846 40 H 0.163 0.837 41 H 0.287 0.713 42 H 0.278 0.722 Dipole moment (debyes) X Y Z Total from point charges -10.431 -23.520 9.755 27.516 hybrid contribution 0.502 0.539 -0.435 0.855 sum -9.929 -22.981 9.320 26.713 Atomic orbital electron populations 1.22040 0.88811 1.03989 1.05362 1.20176 0.97422 0.90379 0.84621 1.19466 1.01607 0.92869 0.94740 1.20726 1.00041 0.94672 0.96880 1.21257 0.94905 0.93550 0.98245 1.20308 1.01950 0.95028 0.94290 1.18254 0.78555 0.85564 0.84541 1.90752 1.53184 1.67173 1.31250 1.46304 1.65201 1.17157 1.07671 1.21796 0.97976 0.78652 1.01713 1.19335 0.97731 0.96816 0.88675 1.21034 1.44187 0.98140 0.92738 0.92207 1.24999 0.95423 0.98372 0.95498 1.69949 1.48454 1.37487 0.97354 0.86502 0.79159 0.84234 0.77606 1.20543 1.21149 1.19718 1.21422 0.96425 0.94347 0.97736 1.21271 0.98707 0.95149 0.98200 1.45736 1.54795 1.28558 1.09064 1.15889 0.79499 0.82232 0.81678 1.91078 1.48038 1.41351 1.60797 1.44294 1.51137 1.30729 1.08721 1.20556 0.77181 0.80306 0.89687 1.90832 1.56483 1.68320 1.16464 0.89194 0.90858 0.89686 0.85467 0.84074 0.76766 0.92249 0.92286 0.95887 0.95856 0.92799 0.84636 0.83691 0.71253 0.72231 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.59 8.96 37.16 0.33 -0.26 16 2 C 0.16 0.99 1.16 -133.25 -0.15 0.83 16 3 C -0.09 -0.67 4.89 -104.53 -0.51 -1.18 16 4 C -0.10 -0.82 9.33 -39.64 -0.37 -1.19 16 5 C -0.06 -0.65 9.60 -39.19 -0.38 -1.03 16 6 C -0.11 -1.44 5.87 -104.97 -0.62 -2.05 16 7 C 0.54 9.13 7.77 -12.33 -0.10 9.03 16 8 O -0.54 -10.93 16.35 5.32 0.09 -10.85 16 9 N -0.71 -12.18 5.51 -61.25 -0.34 -12.52 16 10 C 0.12 2.51 5.61 -4.04 -0.02 2.49 16 11 C 0.01 0.29 5.09 -27.89 -0.14 0.15 16 12 C -0.52 -14.29 9.11 -34.44 -0.31 -14.60 16 13 H 0.06 1.60 7.74 -52.49 -0.41 1.20 16 14 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 15 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 16 Si 0.90 21.18 29.54 -169.99 -5.02 16.16 16 17 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 18 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 20 C -0.08 -0.87 9.54 -39.18 -0.37 -1.24 16 21 C -0.12 -1.07 9.16 -39.64 -0.36 -1.43 16 22 N -0.72 -3.87 5.35 -53.93 -0.29 -4.16 16 23 C 0.71 5.59 9.00 -87.71 -0.79 4.80 16 24 O -0.54 -6.18 18.04 5.34 0.10 -6.08 16 25 N -0.68 -4.41 5.70 -15.71 -0.09 -4.50 16 26 C 0.54 3.99 6.98 -10.55 -0.07 3.91 16 27 O -0.45 -4.33 15.89 5.60 0.09 -4.24 16 28 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.08 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.13 0.62 7.00 -52.48 -0.37 0.25 16 32 H 0.14 1.54 7.65 -52.49 -0.40 1.14 16 33 H 0.40 5.83 6.51 -40.82 -0.27 5.56 16 34 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 35 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.02 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 39 H 0.14 1.31 6.41 -52.49 -0.34 0.98 16 40 H 0.15 1.31 5.67 -52.48 -0.30 1.01 16 41 H 0.44 1.47 8.12 -40.82 -0.33 1.14 16 42 H 0.43 2.04 8.96 -40.82 -0.37 1.67 16 LS Contribution 361.89 15.07 5.45 5.45 Total: -1.00 -34.84 361.89 -8.11 -42.95 By element: Atomic # 1 Polarization: 7.98 SS G_CDS: -4.87 Total: 3.11 kcal Atomic # 6 Polarization: 3.73 SS G_CDS: -3.97 Total: -0.24 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.02 Total: -46.27 kcal Atomic # 8 Polarization: -21.44 SS G_CDS: 0.27 Total: -21.16 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.84 -8.11 -42.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273139628.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.601 kcal (2) G-P(sol) polarization free energy of solvation -34.844 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.107 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.950 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds