Wall clock time and date at job start Tue Mar 31 2020 16:08:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 110.53449 * 2 1 4 4 C 1.38364 * 119.85270 * 89.30212 * 3 2 1 5 5 C 1.37949 * 120.14577 * 179.97438 * 4 3 2 6 6 C 1.39575 * 119.85507 * 0.02562 * 5 4 3 7 7 C 1.47841 * 120.14825 * 179.72736 * 6 5 4 8 8 O 1.21550 * 120.00206 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00166 * 180.02562 * 7 6 5 10 10 C 1.46498 * 120.00111 * 179.97438 * 9 7 6 11 11 C 1.52997 * 109.47318 * 179.97438 * 10 9 7 12 12 C 1.50698 * 109.47334 * 179.97438 * 11 10 9 13 13 H 1.08001 * 120.00055 * 0.02562 * 12 11 10 14 14 C 1.37881 * 120.00368 * 180.02562 * 12 11 10 15 15 N 1.31513 * 119.99592 * 0.02562 * 14 12 11 16 16 Si 1.86796 * 120.00296 * 180.02562 * 14 12 11 17 17 H 1.48501 * 109.47252 * 89.99959 * 16 14 12 18 18 H 1.48496 * 109.47127 * 210.00106 * 16 14 12 19 19 H 1.48503 * 109.46922 * 330.00161 * 16 14 12 20 20 C 1.39588 * 119.70982 * 0.02562 * 6 5 4 21 21 C 1.37951 * 119.84935 * 359.97438 * 20 6 5 22 22 N 1.47310 * 110.59906 * 122.83303 * 2 1 3 23 23 C 1.34868 * 106.44013 * 118.72978 * 22 2 1 24 24 O 1.21535 * 123.72810 * 179.97438 * 23 22 2 25 25 N 1.33790 * 112.49813 * 359.86412 * 23 22 2 26 26 C 1.34773 * 111.64689 * 0.08629 * 25 23 22 27 27 O 1.21229 * 127.15636 * 180.02562 * 26 25 23 28 28 H 1.08998 * 109.47378 * 59.99521 * 1 2 3 29 29 H 1.08998 * 109.46877 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46638 * 299.99477 * 1 2 3 31 31 H 1.08004 * 119.92502 * 0.02562 * 4 3 2 32 32 H 1.08002 * 120.07899 * 180.02562 * 5 4 3 33 33 H 0.97000 * 120.00217 * 359.97438 * 9 7 6 34 34 H 1.09001 * 109.47205 * 299.99661 * 10 9 7 35 35 H 1.09002 * 109.47112 * 59.99295 * 10 9 7 36 36 H 1.08996 * 109.47298 * 299.99854 * 11 10 9 37 37 H 1.09002 * 109.47014 * 59.99958 * 11 10 9 38 38 H 0.96997 * 119.99965 * 180.02562 * 15 14 12 39 39 H 1.07994 * 120.07087 * 179.97438 * 20 6 5 40 40 H 1.08006 * 119.92607 * 180.02562 * 21 20 6 41 41 H 0.97003 * 126.68855 * 298.64394 * 22 2 1 42 42 H 0.97003 * 124.17781 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0586 1.4113 0.0000 4 6 2.2865 2.0614 1.2000 5 6 2.7708 3.3530 1.2070 6 6 3.0305 4.0043 0.0002 7 6 3.5439 5.3907 0.0001 8 8 3.7404 5.9662 1.0526 9 7 3.7931 6.0170 -1.1671 10 6 4.3014 7.3910 -1.1671 11 6 4.4980 7.8621 -2.6094 12 6 5.0202 9.2757 -2.6095 13 1 5.1948 9.7869 -1.6743 14 6 5.2750 9.9165 -3.8035 15 7 5.0619 9.2941 -4.9423 16 14 5.9230 11.6684 -3.8036 17 1 7.4077 11.6471 -3.7839 18 1 5.4542 12.3695 -5.0257 19 1 5.4222 12.3814 -2.6010 20 6 2.7974 3.3432 -1.2069 21 6 2.3129 2.0515 -1.1999 22 7 2.0483 -0.7476 1.1586 23 6 2.7646 -1.7759 0.6600 24 8 3.3357 -2.5976 1.3497 25 7 2.7744 -1.7918 -0.6777 26 6 2.0633 -0.7692 -1.1924 27 8 1.8865 -0.5172 -2.3649 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 2.0856 1.5561 2.1331 32 1 2.9487 3.8593 2.1443 33 1 3.6360 5.5581 -2.0070 34 1 3.5859 8.0431 -0.6660 35 1 5.2552 7.4257 -0.6407 36 1 5.2136 7.2100 -3.1103 37 1 3.5443 7.8274 -3.1362 38 1 5.2416 9.7447 -5.7822 39 1 2.9958 3.8417 -2.1441 40 1 2.1325 1.5386 -2.1331 41 1 1.9031 -0.5393 2.0949 42 1 3.2370 -2.4568 -1.2114 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273139628.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:42 Heat of formation + Delta-G solvation = -87.310260 kcal Electronic energy + Delta-G solvation = -27023.858857 eV Core-core repulsion = 22968.242023 eV Total energy + Delta-G solvation = -4055.616834 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -43.70532 -41.25923 -40.01378 -39.42367 -37.52964 -36.67681 -35.57693 -34.87675 -32.87289 -32.29542 -31.43043 -30.46165 -27.09072 -26.23006 -24.71748 -24.32712 -23.26460 -22.90879 -22.05714 -21.27524 -19.53585 -19.06123 -18.52107 -18.09088 -17.75430 -17.23517 -17.11097 -16.60712 -16.53013 -16.50997 -16.29007 -15.80711 -15.54183 -15.31570 -15.09245 -14.87338 -14.49205 -14.40760 -14.28925 -13.67097 -13.54817 -13.44323 -13.23520 -12.95178 -12.77602 -12.55289 -12.37986 -12.26568 -12.03634 -11.71206 -11.54164 -11.48879 -11.33540 -11.00409 -10.69044 -10.61636 -10.22031 -10.07888 -9.89436 -8.24931 -6.35358 -0.38766 0.28209 0.41913 1.33404 1.41846 1.42097 1.53592 1.66868 1.87464 2.05210 2.16058 2.43331 2.70653 2.77896 3.10008 3.11820 3.66845 3.72393 3.76825 3.92880 4.14095 4.26657 4.36889 4.45220 4.46595 4.59284 4.70218 4.71779 4.82543 4.93516 4.98449 5.14777 5.16266 5.22510 5.23176 5.29487 5.46055 5.55942 5.69955 5.74897 5.77154 5.79721 6.14467 6.27703 6.52524 6.77691 7.04540 7.14357 7.33993 8.86944 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023332 B = 0.002081 C = 0.001994 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1199.793575 B =13449.532763 C =14035.714777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.172 3.828 3 C -0.072 4.072 4 C -0.092 4.092 5 C -0.065 4.065 6 C -0.136 4.136 7 C 0.546 3.454 8 O -0.583 6.583 9 N -0.712 5.712 10 C 0.140 3.860 11 C 0.022 3.978 12 C -0.547 4.547 13 H 0.060 0.940 14 C 0.007 3.993 15 N -0.926 5.926 16 Si 0.965 3.035 17 H -0.273 1.273 18 H -0.280 1.280 19 H -0.266 1.266 20 C -0.082 4.082 21 C -0.117 4.117 22 N -0.698 5.698 23 C 0.709 3.291 24 O -0.575 6.575 25 N -0.671 5.671 26 C 0.538 3.462 27 O -0.475 6.475 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.103 0.897 31 H 0.165 0.835 32 H 0.137 0.863 33 H 0.409 0.591 34 H 0.050 0.950 35 H 0.049 0.951 36 H 0.009 0.991 37 H 0.010 0.990 38 H 0.266 0.734 39 H 0.140 0.860 40 H 0.150 0.850 41 H 0.454 0.546 42 H 0.442 0.558 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.710 -24.823 10.311 29.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.081 3.919 3 C -0.073 4.073 4 C -0.110 4.110 5 C -0.084 4.084 6 C -0.139 4.139 7 C 0.334 3.666 8 O -0.465 6.465 9 N -0.362 5.362 10 C 0.016 3.984 11 C -0.016 4.016 12 C -0.585 4.585 13 H 0.078 0.922 14 C -0.192 4.192 15 N -0.566 5.566 16 Si 0.790 3.210 17 H -0.198 1.198 18 H -0.205 1.205 19 H -0.190 1.190 20 C -0.100 4.100 21 C -0.135 4.135 22 N -0.365 5.365 23 C 0.409 3.591 24 O -0.451 6.451 25 N -0.342 5.342 26 C 0.323 3.677 27 O -0.344 6.344 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.122 0.878 31 H 0.182 0.818 32 H 0.155 0.845 33 H 0.246 0.754 34 H 0.069 0.931 35 H 0.067 0.933 36 H 0.027 0.973 37 H 0.028 0.972 38 H 0.075 0.925 39 H 0.157 0.843 40 H 0.167 0.833 41 H 0.302 0.698 42 H 0.286 0.714 Dipole moment (debyes) X Y Z Total from point charges -11.400 -24.610 10.606 29.122 hybrid contribution 0.753 0.756 -0.706 1.279 sum -10.646 -23.854 9.901 27.935 Atomic orbital electron populations 1.22109 0.86676 1.05094 1.06255 1.20171 0.98759 0.88854 0.84142 1.19667 0.99828 0.93560 0.94272 1.21008 0.98242 0.93348 0.98364 1.21352 0.95095 0.94677 0.97298 1.20014 1.04753 0.93070 0.96026 1.18842 0.77373 0.86918 0.83420 1.90719 1.54910 1.68502 1.32389 1.46109 1.65385 1.15886 1.08832 1.21288 0.97435 0.80619 0.99039 1.19143 0.96329 0.95665 0.90415 1.21458 1.44466 0.99612 0.92972 0.92224 1.25874 0.95557 1.02680 0.95094 1.70053 1.49291 1.39263 0.97956 0.85442 0.78675 0.79052 0.77870 1.19813 1.20520 1.19019 1.21459 0.96420 0.94950 0.97200 1.21340 0.98547 0.94522 0.99106 1.45663 1.53760 1.27469 1.09581 1.15953 0.79236 0.82220 0.81723 1.91065 1.49641 1.42840 1.61581 1.44243 1.50748 1.30731 1.08470 1.20734 0.76858 0.80388 0.89686 1.90832 1.57233 1.68909 1.17459 0.89377 0.89729 0.87786 0.81785 0.84474 0.75395 0.93129 0.93282 0.97302 0.97157 0.92521 0.84260 0.83289 0.69789 0.71416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.67 8.96 71.98 0.65 -0.02 16 2 C 0.17 1.53 1.16 2.24 0.00 1.54 16 3 C -0.07 -0.92 4.89 -19.81 -0.10 -1.02 16 4 C -0.09 -1.15 9.33 22.23 0.21 -0.95 16 5 C -0.07 -1.31 9.60 22.52 0.22 -1.10 16 6 C -0.14 -3.40 5.87 -20.09 -0.12 -3.52 16 7 C 0.55 18.60 7.77 86.78 0.67 19.28 16 8 O -0.58 -24.00 16.35 -3.87 -0.06 -24.06 16 9 N -0.71 -24.90 5.51 -465.98 -2.57 -27.46 16 10 C 0.14 5.99 5.61 86.38 0.48 6.47 16 11 C 0.02 1.10 5.09 29.85 0.15 1.25 16 12 C -0.55 -30.37 9.11 25.60 0.23 -30.14 16 13 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 14 C 0.01 0.38 5.46 84.66 0.46 0.84 16 15 N -0.93 -54.04 13.29 21.45 0.28 -53.76 16 16 Si 0.97 43.42 29.54 68.60 2.03 45.44 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 20 C -0.08 -1.69 9.54 22.53 0.21 -1.47 16 21 C -0.12 -1.96 9.16 22.23 0.20 -1.76 16 22 N -0.70 -5.31 5.35 -442.77 -2.37 -7.68 16 23 C 0.71 9.67 9.00 179.33 1.61 11.29 16 24 O -0.58 -12.32 18.04 -3.83 -0.07 -12.39 16 25 N -0.67 -7.50 5.70 -440.86 -2.51 -10.01 16 26 C 0.54 6.82 6.98 87.94 0.61 7.44 16 27 O -0.47 -8.31 15.89 -2.87 -0.05 -8.36 16 28 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 29 H 0.08 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.10 0.14 8.14 -2.38 -0.02 0.12 16 31 H 0.16 0.84 7.00 -2.91 -0.02 0.81 16 32 H 0.14 2.87 7.65 -2.91 -0.02 2.85 16 33 H 0.41 12.27 6.51 -92.71 -0.60 11.67 16 34 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 35 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 37 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.27 14.58 8.31 -92.71 -0.77 13.81 16 39 H 0.14 2.66 6.41 -2.91 -0.02 2.64 16 40 H 0.15 2.46 5.67 -2.91 -0.02 2.44 16 41 H 0.45 1.26 8.12 -92.71 -0.75 0.51 16 42 H 0.44 3.56 8.96 -92.71 -0.83 2.73 16 Total: -1.00 -76.01 361.89 -0.88 -76.89 By element: Atomic # 1 Polarization: 14.33 SS G_CDS: -1.07 Total: 13.26 kcal Atomic # 6 Polarization: 2.61 SS G_CDS: 5.51 Total: 8.12 kcal Atomic # 7 Polarization: -91.75 SS G_CDS: -7.16 Total: -98.91 kcal Atomic # 8 Polarization: -44.63 SS G_CDS: -0.18 Total: -44.81 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.44 kcal Total: -76.01 -0.88 -76.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273139628.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.417 kcal (2) G-P(sol) polarization free energy of solvation -76.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.893 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.310 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds