Wall clock time and date at job start Tue Mar 31 2020 16:21:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46695 * 2 1 4 4 N 1.31923 * 120.17254 * 274.84571 * 3 2 1 5 5 N 1.28277 * 122.32410 * 179.97438 * 4 3 2 6 6 C 1.31918 * 122.51807 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.01444 * 179.97438 * 6 5 4 8 8 C 1.38498 * 119.96920 * 359.71611 * 6 5 4 9 9 C 1.39730 * 120.17349 * 94.82925 * 3 2 1 10 10 C 1.48135 * 121.14255 * 0.02562 * 9 3 2 11 11 O 1.21519 * 119.99920 * 303.00258 * 10 9 3 12 12 N 1.34776 * 120.00121 * 123.00560 * 10 9 3 13 13 C 1.46503 * 120.00011 * 184.38104 * 12 10 9 14 14 C 1.50703 * 109.47039 * 269.99935 * 13 12 10 15 15 H 1.08001 * 119.99837 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00111 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99955 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99851 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47552 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47328 * 119.99730 * 18 16 14 21 21 H 1.48502 * 109.47112 * 239.99320 * 18 16 14 22 22 C 1.46493 * 120.00074 * 4.37509 * 12 10 9 23 23 C 1.53003 * 109.47432 * 266.37733 * 22 12 10 24 24 F 1.39898 * 109.46761 * 59.99906 * 23 22 12 25 25 F 1.39896 * 109.47504 * 180.02562 * 23 22 12 26 26 F 1.39898 * 109.46917 * 300.00307 * 23 22 12 27 27 H 1.09002 * 109.47074 * 60.00763 * 1 2 3 28 28 H 1.09009 * 109.46820 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47708 * 299.99783 * 1 2 3 30 30 H 1.08998 * 109.47708 * 240.00216 * 2 1 3 31 31 H 1.09005 * 109.47411 * 119.99639 * 2 1 3 32 32 H 1.08998 * 109.47012 * 90.00042 * 7 6 5 33 33 H 1.08997 * 109.47165 * 209.99869 * 7 6 5 34 34 H 1.09004 * 109.47563 * 330.00295 * 7 6 5 35 35 H 1.08002 * 121.09111 * 180.30316 * 8 6 5 36 36 H 1.09000 * 109.47196 * 29.99583 * 13 12 10 37 37 H 1.08997 * 109.47362 * 149.99753 * 13 12 10 38 38 H 0.97001 * 119.99974 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.46993 * 146.37712 * 22 12 10 40 40 H 1.08992 * 109.47256 * 26.37780 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.1623 2.0781 -1.1364 5 7 2.5853 3.2882 -1.1844 6 6 2.9217 3.9652 -0.1033 7 6 3.4125 5.3848 -0.2251 8 6 2.8186 3.3725 1.1442 9 6 2.3621 2.0492 1.2037 10 6 2.2289 1.3421 2.4986 11 8 1.1556 0.8785 2.8300 12 7 3.2979 1.2132 3.3091 13 6 3.1909 0.4321 4.5440 14 6 2.7605 1.3333 5.6726 15 1 2.5847 2.3829 5.4886 16 6 2.5922 0.8180 6.9404 17 7 2.8068 -0.4600 7.1646 18 14 2.0595 1.9352 8.3395 19 1 1.8856 3.3190 7.8294 20 1 0.7730 1.4484 8.8993 21 1 3.0966 1.9265 9.4023 22 6 4.5669 1.8539 2.9554 23 6 5.4455 0.8594 2.1937 24 9 4.7872 0.4533 1.0280 25 9 6.6576 1.4711 1.8563 26 9 5.6951 -0.2556 3.0008 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.5654 6.0683 -0.1677 33 1 4.1083 5.5996 0.5859 34 1 3.9189 5.5134 -1.1818 35 1 3.0845 3.9116 2.0415 36 1 2.4541 -0.3599 4.4103 37 1 4.1594 -0.0087 4.7801 38 1 2.6880 -0.8226 8.0564 39 1 5.0797 2.1703 3.8636 40 1 4.3724 2.7226 2.3265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273596725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:00 Heat of formation + Delta-G solvation = -134.346330 kcal Electronic energy + Delta-G solvation = -30311.838301 eV Core-core repulsion = 25712.325090 eV Total energy + Delta-G solvation = -4599.513211 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.93976 -47.49954 -47.37520 -41.42131 -39.21895 -35.84774 -34.97661 -33.81008 -32.83093 -31.58465 -29.50084 -28.10312 -27.39408 -25.32912 -24.41319 -23.44571 -22.75718 -21.83416 -19.59989 -18.41667 -18.37923 -18.06469 -17.50321 -16.73717 -16.27846 -16.03554 -15.94221 -15.21660 -14.61527 -14.43283 -14.28253 -14.25976 -14.13558 -13.86699 -13.76056 -13.65830 -13.58666 -13.54851 -13.28612 -13.13489 -12.60203 -12.53269 -12.34054 -12.25804 -12.08860 -11.75614 -11.45088 -11.10579 -10.98353 -10.83865 -10.78892 -10.39284 -10.17909 -10.07154 -9.90135 -9.52923 -9.30066 -8.60871 -8.27561 -6.22240 -4.28843 0.45424 0.77420 2.57816 2.97695 3.17379 3.19473 3.28144 3.31038 3.43214 3.83231 3.94706 4.03492 4.11858 4.28530 4.30092 4.38347 4.50988 4.75212 4.90052 4.98120 5.12737 5.14620 5.26563 5.32221 5.35138 5.41523 5.53463 5.54394 5.80498 5.82251 6.02429 6.08405 6.23648 6.40806 6.59725 7.00107 7.18145 7.70640 7.76801 7.96910 8.36503 8.63686 8.74118 9.37088 10.86156 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.004911 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.813165 B = 5700.063704 C = 6153.701340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.070 4.070 3 C 0.115 3.885 4 N -0.235 5.235 5 N -0.234 5.234 6 C 0.061 3.939 7 C -0.099 4.099 8 C -0.102 4.102 9 C -0.108 4.108 10 C 0.559 3.441 11 O -0.492 6.492 12 N -0.583 5.583 13 C 0.242 3.758 14 C -0.536 4.536 15 H 0.061 0.939 16 C 0.065 3.935 17 N -0.888 5.888 18 Si 0.900 3.100 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.282 1.282 22 C 0.060 3.940 23 C 0.429 3.571 24 F -0.186 7.186 25 F -0.186 7.186 26 F -0.171 7.171 27 H 0.055 0.945 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.158 0.842 36 H 0.051 0.949 37 H 0.047 0.953 38 H 0.266 0.734 39 H 0.135 0.865 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.213 7.224 -12.202 14.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.109 4.109 3 C -0.029 4.029 4 N -0.076 5.076 5 N -0.077 5.077 6 C -0.083 4.083 7 C -0.157 4.157 8 C -0.131 4.131 9 C -0.122 4.122 10 C 0.344 3.656 11 O -0.365 6.365 12 N -0.315 5.315 13 C 0.124 3.876 14 C -0.574 4.574 15 H 0.079 0.921 16 C -0.138 4.138 17 N -0.526 5.526 18 Si 0.728 3.272 19 H -0.198 1.198 20 H -0.207 1.207 21 H -0.208 1.208 22 C -0.067 4.067 23 C 0.373 3.627 24 F -0.167 7.167 25 F -0.168 7.168 26 F -0.153 7.153 27 H 0.074 0.926 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.105 0.895 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.102 0.898 35 H 0.175 0.825 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.153 0.847 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 3.463 6.755 -13.504 15.491 hybrid contribution 0.191 0.448 2.351 2.401 sum 3.653 7.203 -11.153 13.770 Atomic orbital electron populations 1.21697 0.93049 1.02630 1.02667 1.20485 0.97560 0.88817 1.04078 1.22910 0.92886 0.98571 0.88566 1.72956 1.09440 1.01336 1.23877 1.72797 1.06801 1.01114 1.26983 1.22789 0.96765 0.98811 0.89982 1.20680 1.01841 0.88915 1.04272 1.22497 0.96678 0.94178 0.99794 1.21410 0.98771 0.95654 0.96405 1.17866 0.84954 0.80458 0.82349 1.90829 1.25431 1.46703 1.73525 1.48182 1.07085 1.51795 1.24398 1.19648 0.99275 0.91139 0.77515 1.21351 1.47594 0.95569 0.92917 0.92117 1.24921 0.94934 0.95188 0.98751 1.69933 1.48263 1.12063 1.22387 0.86409 0.78444 0.80609 0.81755 1.19763 1.20744 1.20819 1.22939 0.87210 0.93752 1.02837 1.21555 0.79756 0.82974 0.78455 1.93177 1.80709 1.91709 1.51153 1.93161 1.47709 1.82915 1.92983 1.93231 1.94466 1.54999 1.72581 0.92639 0.91624 0.91184 0.89511 0.89615 0.89754 0.90085 0.89786 0.82451 0.93057 0.93535 0.92462 0.84718 0.86959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.97 9.84 37.16 0.37 -1.61 16 2 C -0.07 -1.04 5.66 -27.88 -0.16 -1.20 16 3 C 0.12 1.83 5.90 -81.99 -0.48 1.34 16 4 N -0.23 -3.75 11.42 33.81 0.39 -3.37 16 5 N -0.23 -3.47 11.41 33.57 0.38 -3.09 16 6 C 0.06 0.74 6.86 -82.46 -0.57 0.18 16 7 C -0.10 -0.78 10.19 36.00 0.37 -0.41 16 8 C -0.10 -1.32 7.50 -38.78 -0.29 -1.61 16 9 C -0.11 -1.71 3.95 -104.57 -0.41 -2.13 16 10 C 0.56 10.65 5.86 -12.20 -0.07 10.58 16 11 O -0.49 -11.03 14.93 5.35 0.08 -10.95 16 12 N -0.58 -11.04 2.37 -176.07 -0.42 -11.45 16 13 C 0.24 5.71 4.91 -5.19 -0.03 5.68 16 14 C -0.54 -13.80 9.39 -34.44 -0.32 -14.12 16 15 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 16 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 17 N -0.89 -24.83 13.29 55.43 0.74 -24.09 16 18 Si 0.90 20.49 29.54 -169.99 -5.02 15.47 16 19 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 C 0.06 0.87 5.31 -4.04 -0.02 0.85 16 23 C 0.43 6.45 3.29 37.16 0.12 6.57 16 24 F -0.19 -2.95 15.62 2.25 0.04 -2.92 16 25 F -0.19 -2.54 17.32 2.25 0.04 -2.50 16 26 F -0.17 -2.95 15.88 2.25 0.04 -2.91 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 29 H 0.07 1.11 7.18 -51.93 -0.37 0.74 16 30 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.09 1.39 6.75 -51.93 -0.35 1.04 16 32 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 34 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.16 1.62 7.16 -52.49 -0.38 1.24 16 36 H 0.05 1.37 7.49 -51.93 -0.39 0.99 16 37 H 0.05 1.12 6.93 -51.93 -0.36 0.76 16 38 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 39 H 0.13 1.81 8.10 -51.93 -0.42 1.39 16 40 H 0.11 1.32 4.10 -51.93 -0.21 1.11 16 LS Contribution 349.86 15.07 5.27 5.27 Total: -1.00 -30.96 349.86 -4.63 -35.59 By element: Atomic # 1 Polarization: 3.74 SS G_CDS: -4.56 Total: -0.82 kcal Atomic # 6 Polarization: 7.37 SS G_CDS: -1.60 Total: 5.77 kcal Atomic # 7 Polarization: -43.08 SS G_CDS: 1.09 Total: -42.00 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: 0.08 Total: -10.95 kcal Atomic # 9 Polarization: -8.44 SS G_CDS: 0.11 Total: -8.33 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.47 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -30.96 -4.63 -35.59 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273596725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.757 kcal (2) G-P(sol) polarization free energy of solvation -30.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.346 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds