Wall clock time and date at job start Tue Mar 31 2020 16:20:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50704 * 109.46695 * 2 1 4 4 N 1.31923 * 120.17254 * 274.84571 * 3 2 1 5 5 N 1.28277 * 122.32410 * 179.97438 * 4 3 2 6 6 C 1.31918 * 122.51807 * 0.02562 * 5 4 3 7 7 C 1.50698 * 120.01444 * 179.97438 * 6 5 4 8 8 C 1.38498 * 119.96920 * 359.71611 * 6 5 4 9 9 C 1.39730 * 120.17349 * 94.82925 * 3 2 1 10 10 C 1.48135 * 121.14255 * 0.02562 * 9 3 2 11 11 O 1.21519 * 119.99920 * 303.00258 * 10 9 3 12 12 N 1.34776 * 120.00121 * 123.00560 * 10 9 3 13 13 C 1.46503 * 120.00011 * 184.38104 * 12 10 9 14 14 C 1.50703 * 109.47039 * 269.99935 * 13 12 10 15 15 H 1.08001 * 119.99837 * 359.97438 * 14 13 12 16 16 C 1.37876 * 120.00111 * 180.02562 * 14 13 12 17 17 N 1.31516 * 119.99955 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99851 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47552 * 359.97438 * 18 16 14 20 20 H 1.48504 * 109.47328 * 119.99730 * 18 16 14 21 21 H 1.48502 * 109.47112 * 239.99320 * 18 16 14 22 22 C 1.46493 * 120.00074 * 4.37509 * 12 10 9 23 23 C 1.53003 * 109.47432 * 266.37733 * 22 12 10 24 24 F 1.39898 * 109.46761 * 59.99906 * 23 22 12 25 25 F 1.39896 * 109.47504 * 180.02562 * 23 22 12 26 26 F 1.39898 * 109.46917 * 300.00307 * 23 22 12 27 27 H 1.09002 * 109.47074 * 60.00763 * 1 2 3 28 28 H 1.09009 * 109.46820 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47708 * 299.99783 * 1 2 3 30 30 H 1.08998 * 109.47708 * 240.00216 * 2 1 3 31 31 H 1.09005 * 109.47411 * 119.99639 * 2 1 3 32 32 H 1.08998 * 109.47012 * 90.00042 * 7 6 5 33 33 H 1.08997 * 109.47165 * 209.99869 * 7 6 5 34 34 H 1.09004 * 109.47563 * 330.00295 * 7 6 5 35 35 H 1.08002 * 121.09111 * 180.30316 * 8 6 5 36 36 H 1.09000 * 109.47196 * 29.99583 * 13 12 10 37 37 H 1.08997 * 109.47362 * 149.99753 * 13 12 10 38 38 H 0.97001 * 119.99974 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.46993 * 146.37712 * 22 12 10 40 40 H 1.08992 * 109.47256 * 26.37780 * 22 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.1623 2.0781 -1.1364 5 7 2.5853 3.2882 -1.1844 6 6 2.9217 3.9652 -0.1033 7 6 3.4125 5.3848 -0.2251 8 6 2.8186 3.3725 1.1442 9 6 2.3621 2.0492 1.2037 10 6 2.2289 1.3421 2.4986 11 8 1.1556 0.8785 2.8300 12 7 3.2979 1.2132 3.3091 13 6 3.1909 0.4321 4.5440 14 6 2.7605 1.3333 5.6726 15 1 2.5847 2.3829 5.4886 16 6 2.5922 0.8180 6.9404 17 7 2.8068 -0.4600 7.1646 18 14 2.0595 1.9352 8.3395 19 1 1.8856 3.3190 7.8294 20 1 0.7730 1.4484 8.8993 21 1 3.0966 1.9265 9.4023 22 6 4.5669 1.8539 2.9554 23 6 5.4455 0.8594 2.1937 24 9 4.7872 0.4533 1.0280 25 9 6.6576 1.4711 1.8563 26 9 5.6951 -0.2556 3.0008 27 1 -0.3633 0.5137 -0.8901 28 1 -0.3633 -1.0278 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 2.5654 6.0683 -0.1677 33 1 4.1083 5.5996 0.5859 34 1 3.9189 5.5134 -1.1818 35 1 3.0845 3.9116 2.0415 36 1 2.4541 -0.3599 4.4103 37 1 4.1594 -0.0087 4.7801 38 1 2.6880 -0.8226 8.0564 39 1 5.0797 2.1703 3.8636 40 1 4.3724 2.7226 2.3265 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273596725.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:59 Heat of formation + Delta-G solvation = -153.198648 kcal Electronic energy + Delta-G solvation = -30312.655799 eV Core-core repulsion = 25712.325090 eV Total energy + Delta-G solvation = -4600.330709 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -51.18167 -48.70653 -48.66699 -42.59133 -40.67439 -37.31843 -36.15270 -35.20276 -34.50627 -32.70220 -30.98674 -29.28458 -28.80769 -26.58769 -25.75324 -24.81283 -24.18505 -23.03476 -20.99871 -19.66985 -19.62976 -19.38505 -18.72289 -18.51048 -17.72134 -17.48557 -17.12260 -16.57383 -16.13382 -15.72213 -15.59554 -15.58073 -15.29267 -15.10871 -15.05812 -14.84948 -14.82889 -14.77120 -14.50246 -14.29948 -14.07864 -13.70549 -13.54431 -13.27662 -13.23132 -13.17148 -12.90754 -12.84105 -12.63269 -12.26435 -12.15728 -11.93168 -11.76268 -11.51209 -11.26316 -10.64783 -10.63612 -10.56663 -9.93487 -8.23848 -6.37621 -0.70759 -0.28958 1.20173 1.40433 1.42825 1.52693 1.64194 1.81605 2.29776 2.39711 2.71391 2.77123 2.81192 2.90802 3.09981 3.18857 3.28576 3.38432 3.68305 3.80402 3.93421 4.07863 4.19215 4.22268 4.27518 4.49632 4.62783 4.80351 4.80442 4.87936 4.91609 4.96666 5.10168 5.15014 5.23131 5.30817 5.31413 5.70346 5.97895 6.17522 6.68874 6.89278 7.33010 7.52968 8.84735 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.011602 B = 0.004911 C = 0.004549 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2412.813165 B = 5700.063704 C = 6153.701340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.071 4.071 3 C 0.107 3.893 4 N -0.250 5.250 5 N -0.252 5.252 6 C 0.071 3.929 7 C -0.099 4.099 8 C -0.091 4.091 9 C -0.124 4.124 10 C 0.562 3.438 11 O -0.537 6.537 12 N -0.587 5.587 13 C 0.259 3.741 14 C -0.542 4.542 15 H 0.066 0.934 16 C 0.012 3.988 17 N -0.926 5.926 18 Si 0.966 3.034 19 H -0.261 1.261 20 H -0.287 1.287 21 H -0.273 1.273 22 C 0.059 3.941 23 C 0.431 3.569 24 F -0.191 7.191 25 F -0.173 7.173 26 F -0.188 7.188 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.044 0.956 30 H 0.102 0.898 31 H 0.063 0.937 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.090 0.910 35 H 0.190 0.810 36 H 0.008 0.992 37 H 0.038 0.962 38 H 0.267 0.733 39 H 0.151 0.849 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.169 10.259 -12.660 17.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.110 4.110 3 C -0.039 4.039 4 N -0.091 5.091 5 N -0.094 5.094 6 C -0.073 4.073 7 C -0.157 4.157 8 C -0.120 4.120 9 C -0.139 4.139 10 C 0.349 3.651 11 O -0.413 6.413 12 N -0.317 5.317 13 C 0.140 3.860 14 C -0.580 4.580 15 H 0.084 0.916 16 C -0.187 4.187 17 N -0.565 5.565 18 Si 0.791 3.209 19 H -0.185 1.185 20 H -0.213 1.213 21 H -0.199 1.199 22 C -0.067 4.067 23 C 0.375 3.625 24 F -0.173 7.173 25 F -0.155 7.155 26 F -0.169 7.169 27 H 0.084 0.916 28 H 0.098 0.902 29 H 0.063 0.937 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.119 0.881 33 H 0.128 0.872 34 H 0.109 0.891 35 H 0.207 0.793 36 H 0.026 0.974 37 H 0.056 0.944 38 H 0.076 0.924 39 H 0.168 0.832 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 4.454 9.817 -14.006 17.674 hybrid contribution -0.062 -0.452 2.411 2.454 sum 4.391 9.364 -11.595 15.537 Atomic orbital electron populations 1.21631 0.92545 1.03352 1.01792 1.20474 0.98024 0.88854 1.03629 1.22936 0.93345 0.98867 0.88702 1.72941 1.10211 1.02163 1.23757 1.72745 1.07369 1.00885 1.28417 1.23454 0.94828 1.00290 0.88754 1.20908 1.03007 0.85855 1.05907 1.22899 0.94931 0.92740 1.01464 1.21131 1.01251 0.97055 0.94437 1.18276 0.84107 0.79691 0.83046 1.90799 1.27225 1.48568 1.74678 1.47980 1.08930 1.51643 1.23152 1.19080 0.97283 0.90478 0.79191 1.21668 1.46916 0.95937 0.93510 0.91605 1.25793 0.95026 0.96461 1.01456 1.70056 1.49588 1.13875 1.23015 0.85390 0.77728 0.79114 0.78712 1.18505 1.21323 1.19868 1.23247 0.85156 0.94048 1.04205 1.21559 0.80204 0.82544 0.78161 1.93175 1.80884 1.91800 1.51402 1.93186 1.46901 1.82521 1.92845 1.93204 1.94599 1.56041 1.73100 0.91597 0.90188 0.93717 0.87986 0.91853 0.88126 0.87162 0.89125 0.79301 0.97360 0.94380 0.92401 0.83166 0.83635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.84 71.98 0.71 -3.13 16 2 C -0.07 -2.14 5.66 29.85 0.17 -1.97 16 3 C 0.11 3.34 5.90 42.91 0.25 3.60 16 4 N -0.25 -7.73 11.42 -46.95 -0.54 -8.27 16 5 N -0.25 -6.94 11.41 -47.70 -0.54 -7.48 16 6 C 0.07 1.50 6.86 42.61 0.29 1.80 16 7 C -0.10 -1.09 10.19 71.24 0.73 -0.36 16 8 C -0.09 -2.07 7.50 22.79 0.17 -1.90 16 9 C -0.12 -3.84 3.95 -19.83 -0.08 -3.92 16 10 C 0.56 21.65 5.86 86.87 0.51 22.16 16 11 O -0.54 -25.14 14.93 -3.77 -0.06 -25.19 16 12 N -0.59 -22.21 2.37 -829.26 -1.97 -24.18 16 13 C 0.26 12.61 4.91 85.63 0.42 13.03 16 14 C -0.54 -28.01 9.39 25.60 0.24 -27.77 16 15 H 0.07 3.26 7.81 -2.91 -0.02 3.24 16 16 C 0.01 0.66 5.46 84.65 0.46 1.12 16 17 N -0.93 -52.85 13.29 21.45 0.28 -52.56 16 18 Si 0.97 41.72 29.54 68.60 2.03 43.75 16 19 H -0.26 -10.68 7.11 99.48 0.71 -9.97 16 20 H -0.29 -12.58 7.11 99.48 0.71 -11.88 16 21 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 22 C 0.06 1.61 5.31 86.38 0.46 2.07 16 23 C 0.43 12.47 3.29 71.98 0.24 12.71 16 24 F -0.19 -5.94 15.62 44.97 0.70 -5.24 16 25 F -0.17 -4.34 17.32 44.97 0.78 -3.56 16 26 F -0.19 -6.49 15.88 44.97 0.71 -5.78 16 27 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 28 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 29 H 0.04 1.48 7.18 -2.39 -0.02 1.47 16 30 H 0.10 2.68 8.14 -2.39 -0.02 2.66 16 31 H 0.06 2.18 6.75 -2.38 -0.02 2.16 16 32 H 0.10 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.11 0.63 8.09 -2.39 -0.02 0.61 16 34 H 0.09 0.95 8.14 -2.38 -0.02 0.93 16 35 H 0.19 3.00 7.16 -2.91 -0.02 2.98 16 36 H 0.01 0.47 7.49 -2.39 -0.02 0.45 16 37 H 0.04 1.91 6.93 -2.39 -0.02 1.89 16 38 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 39 H 0.15 3.67 8.10 -2.39 -0.02 3.65 16 40 H 0.15 2.93 4.10 -2.39 -0.01 2.92 16 Total: -1.00 -69.56 349.86 7.07 -62.49 By element: Atomic # 1 Polarization: 7.49 SS G_CDS: 1.09 Total: 8.59 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: 4.57 Total: 17.43 kcal Atomic # 7 Polarization: -89.72 SS G_CDS: -2.76 Total: -92.49 kcal Atomic # 8 Polarization: -25.14 SS G_CDS: -0.06 Total: -25.19 kcal Atomic # 9 Polarization: -16.77 SS G_CDS: 2.20 Total: -14.57 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -69.56 7.07 -62.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273596725.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.705 kcal (2) G-P(sol) polarization free energy of solvation -69.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -160.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.199 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds