Wall clock time and date at job start Tue Mar 31 2020 16:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47312 * 2 1 4 4 H 1.09005 * 109.46858 * 306.11059 * 3 2 1 5 5 C 1.50697 * 109.47197 * 186.11511 * 3 2 1 6 6 H 1.08003 * 120.00097 * 245.67582 * 5 3 2 7 7 C 1.37879 * 119.99897 * 65.67861 * 5 3 2 8 8 N 1.31522 * 119.99911 * 196.75541 * 7 5 3 9 9 Si 1.86797 * 120.00229 * 16.75341 * 7 5 3 10 10 H 1.48503 * 109.47179 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47200 * 300.00141 * 9 7 5 12 12 H 1.48501 * 109.47164 * 60.00496 * 9 7 5 13 13 N 1.46498 * 109.47651 * 66.10758 * 3 2 1 14 14 C 1.34776 * 120.00532 * 275.00691 * 13 3 2 15 15 O 1.21360 * 119.99845 * 359.97438 * 14 13 3 16 16 C 1.49334 * 120.00240 * 179.97438 * 14 13 3 17 17 O 1.21388 * 119.99843 * 359.97438 * 16 14 13 18 18 N 1.34776 * 120.00201 * 179.97438 * 16 14 13 19 19 C 1.39898 * 119.99948 * 185.66675 * 18 16 14 20 20 C 1.38396 * 120.02405 * 20.23563 * 19 18 16 21 21 C 1.39688 * 119.82629 * 179.74815 * 20 19 18 22 22 C 1.43196 * 120.06936 * 180.22967 * 21 20 19 23 23 N 9.16633 * 104.77683 * 236.94098 * 3 1 2 24 24 C 1.39775 * 119.86619 * 0.52029 * 21 20 19 25 25 C 1.37826 * 120.04432 * 359.75056 * 24 21 20 26 26 C 1.38785 * 120.17743 * 359.97438 * 25 24 21 27 27 O 1.35812 * 119.93137 * 179.97438 * 26 25 24 28 28 C 1.42900 * 117.00105 * 0.02562 * 27 26 25 29 29 H 1.08999 * 109.47355 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47236 * 300.00547 * 1 2 3 31 31 H 1.09003 * 109.47223 * 60.00011 * 1 2 3 32 32 H 1.09002 * 109.47236 * 239.99453 * 2 1 3 33 33 H 1.09003 * 109.46737 * 119.99393 * 2 1 3 34 34 H 0.96996 * 119.99766 * 354.92951 * 8 7 5 35 35 H 0.97005 * 119.99699 * 95.00123 * 13 3 2 36 36 H 0.96998 * 119.99348 * 5.67686 * 18 16 14 37 37 H 1.08006 * 120.08972 * 359.97410 * 20 19 18 38 38 H 1.07997 * 119.97713 * 179.72799 * 24 21 20 39 39 H 1.07993 * 119.90490 * 179.97438 * 25 24 21 40 40 H 1.08994 * 109.46558 * 299.99558 * 28 27 26 41 41 H 1.08990 * 109.47162 * 59.99799 * 28 27 26 42 42 H 1.08999 * 109.46579 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5901 1.9869 -0.8303 5 6 3.5394 1.4451 -0.1514 6 1 4.1630 1.8008 0.6555 7 6 4.1151 0.9935 -1.3200 8 7 5.3928 0.6827 -1.3463 9 14 3.0804 0.8229 -2.8658 10 1 3.9292 0.3226 -3.9769 11 1 1.9737 -0.1355 -2.6175 12 1 2.5161 2.1467 -3.2323 13 7 1.6755 2.0894 1.2628 14 6 0.4605 2.6555 1.4039 15 8 -0.3314 2.6297 0.4846 16 6 0.0888 3.3145 2.6914 17 8 0.8807 3.3399 3.6110 18 7 -1.1260 3.8811 2.8323 19 6 -1.4319 4.6006 3.9924 20 6 -0.4141 5.0916 4.7913 21 6 -0.7242 5.8140 5.9460 22 6 0.3248 6.3287 6.7737 23 7 1.1577 6.7399 7.4283 24 6 -2.0606 6.0283 6.2950 25 6 -3.0700 5.5321 5.4985 26 6 -2.7639 4.8190 4.3478 27 8 -3.7625 4.3318 3.5668 28 6 -5.1025 4.5914 3.9900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.9464 0.8404 -0.5656 35 1 2.3086 2.1103 1.9975 36 1 -1.7881 3.7898 2.1294 37 1 0.6174 4.9199 4.5208 38 1 -2.3024 6.5828 7.1897 39 1 -4.1017 5.6986 5.7705 40 1 -5.2629 4.1557 4.9761 41 1 -5.2664 5.6679 4.0373 42 1 -5.8001 4.1481 3.2794 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275732429.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:45 Heat of formation + Delta-G solvation = -42.072539 kcal Electronic energy + Delta-G solvation = -27620.966094 eV Core-core repulsion = 23567.310914 eV Total energy + Delta-G solvation = -4053.655179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.39993 -40.15796 -38.70813 -38.03314 -36.41319 -35.71505 -34.91673 -32.51200 -31.54685 -31.01658 -30.39987 -27.94483 -27.53097 -25.10351 -23.79377 -22.93607 -22.29708 -20.53793 -19.76293 -19.64756 -18.62838 -18.42762 -17.34927 -16.91519 -16.63946 -16.31024 -15.90412 -15.59655 -15.14748 -14.73661 -14.56578 -14.19182 -14.12311 -14.06747 -13.74263 -13.42474 -13.08266 -12.88314 -12.74914 -12.66063 -12.55044 -12.41645 -12.36310 -11.86025 -11.83287 -11.49202 -11.20581 -10.99894 -10.90797 -10.77447 -10.51589 -9.97238 -9.67886 -9.31121 -9.15367 -9.05128 -8.41247 -8.35557 -8.21542 -6.64885 -4.29355 0.41278 0.75062 1.63588 2.33035 2.53129 2.63187 2.71431 3.32924 3.39563 3.41943 3.53898 3.58856 3.62111 3.90816 4.29549 4.36041 4.41261 4.66960 4.70959 4.73267 4.85086 5.01648 5.06839 5.09654 5.33187 5.36043 5.64485 5.84208 5.94288 5.95886 5.99097 6.13964 6.26774 6.53147 6.66592 6.75709 6.77665 6.87579 6.91776 7.13434 7.24508 7.30855 7.46541 7.65859 8.13711 8.22372 8.44046 8.73518 9.40294 10.76447 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.015702 B = 0.002977 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.811100 B = 9403.839757 C =10821.461295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.141 4.141 3 C 0.246 3.754 4 H 0.047 0.953 5 C -0.621 4.621 6 H 0.065 0.935 7 C 0.041 3.959 8 N -0.894 5.894 9 Si 1.040 2.960 10 H -0.282 1.282 11 H -0.268 1.268 12 H -0.279 1.279 13 N -0.659 5.659 14 C 0.496 3.504 15 O -0.528 6.528 16 C 0.508 3.492 17 O -0.503 6.503 18 N -0.636 5.636 19 C 0.126 3.874 20 C -0.057 4.057 21 C -0.045 4.045 22 C 0.261 3.739 23 N -0.419 5.419 24 C -0.049 4.049 25 C -0.190 4.190 26 C 0.130 3.870 27 O -0.311 6.311 28 C 0.027 3.973 29 H 0.034 0.966 30 H 0.045 0.955 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.054 0.946 34 H 0.271 0.729 35 H 0.407 0.593 36 H 0.430 0.570 37 H 0.171 0.829 38 H 0.137 0.863 39 H 0.144 0.856 40 H 0.060 0.940 41 H 0.060 0.940 42 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.511 8.259 11.700 26.681 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.179 4.179 3 C 0.143 3.857 4 H 0.065 0.935 5 C -0.659 4.659 6 H 0.083 0.917 7 C -0.166 4.166 8 N -0.526 5.526 9 Si 0.867 3.133 10 H -0.208 1.208 11 H -0.194 1.194 12 H -0.205 1.205 13 N -0.308 5.308 14 C 0.274 3.726 15 O -0.406 6.406 16 C 0.291 3.709 17 O -0.377 6.377 18 N -0.282 5.282 19 C 0.030 3.970 20 C -0.080 4.080 21 C -0.049 4.049 22 C -0.054 4.054 23 N -0.095 5.095 24 C -0.070 4.070 25 C -0.209 4.209 26 C 0.081 3.919 27 O -0.224 6.224 28 C -0.068 4.068 29 H 0.053 0.947 30 H 0.064 0.936 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.242 0.758 36 H 0.269 0.731 37 H 0.188 0.812 38 H 0.155 0.845 39 H 0.162 0.838 40 H 0.078 0.922 41 H 0.078 0.922 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -21.063 8.204 10.845 25.072 hybrid contribution -0.578 0.451 1.663 1.817 sum -21.642 8.655 12.508 26.452 Atomic orbital electron populations 1.21905 0.97311 0.99290 1.01772 1.22384 0.93843 0.99348 1.02364 1.19279 0.96503 0.88836 0.81073 0.93511 1.22073 0.89320 1.50282 1.04250 0.91724 1.25698 0.97685 0.92202 1.01063 1.70869 1.06926 1.40265 1.34577 0.84118 0.75537 0.77737 0.75898 1.20795 1.19441 1.20514 1.46216 1.13268 1.52513 1.18826 1.19567 0.84516 0.81455 0.87021 1.90749 1.50036 1.59160 1.40682 1.20952 0.81689 0.78804 0.89453 1.90666 1.49913 1.56397 1.40718 1.43044 1.16199 1.50039 1.18958 1.16884 0.89853 0.99485 0.90803 1.21583 1.01249 0.93164 0.91985 1.15730 0.89242 1.04393 0.95541 1.25504 0.93108 0.93468 0.93322 1.81271 1.09133 1.09388 1.09662 1.20917 0.90049 0.97106 0.98944 1.20937 1.00652 1.03699 0.95626 1.18907 0.86817 0.95340 0.90840 1.86044 1.14931 1.72778 1.48634 1.23162 0.80073 1.01729 1.01841 0.94681 0.93583 0.92804 0.90820 0.92703 0.91913 0.75827 0.73081 0.81160 0.84492 0.83839 0.92181 0.92156 0.87734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.72 8.54 37.16 0.32 -2.40 16 2 C -0.14 -2.98 5.27 -26.73 -0.14 -3.12 16 3 C 0.25 5.59 1.81 -69.09 -0.13 5.47 16 4 H 0.05 1.13 6.24 -51.93 -0.32 0.81 16 5 C -0.62 -16.36 9.01 -34.44 -0.31 -16.67 16 6 H 0.06 1.80 7.96 -52.48 -0.42 1.39 16 7 C 0.04 1.11 5.31 -17.82 -0.09 1.02 16 8 N -0.89 -26.13 13.70 55.43 0.76 -25.38 16 9 Si 1.04 24.06 26.28 -169.99 -4.47 19.60 16 10 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 11 H -0.27 -5.72 5.71 56.52 0.32 -5.40 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.66 -13.06 5.03 -55.41 -0.28 -13.34 16 14 C 0.50 8.89 6.51 -11.64 -0.08 8.81 16 15 O -0.53 -10.08 13.63 5.49 0.07 -10.00 16 16 C 0.51 7.75 7.72 -11.64 -0.09 7.66 16 17 O -0.50 -8.24 13.40 5.46 0.07 -8.17 16 18 N -0.64 -7.93 5.30 -10.23 -0.05 -7.99 16 19 C 0.13 1.39 6.50 -83.62 -0.54 0.85 16 20 C -0.06 -0.66 8.48 -38.98 -0.33 -0.99 16 21 C -0.04 -0.44 5.74 -106.86 -0.61 -1.05 16 22 C 0.26 3.06 15.33 -22.47 -0.34 2.72 16 23 N -0.42 -5.87 18.54 41.85 0.78 -5.09 16 24 C -0.05 -0.34 9.74 -39.16 -0.38 -0.72 16 25 C -0.19 -1.19 9.01 -39.53 -0.36 -1.55 16 26 C 0.13 1.13 6.71 -38.88 -0.26 0.86 16 27 O -0.31 -2.48 9.84 -19.15 -0.19 -2.66 16 28 C 0.03 0.10 9.81 101.05 0.99 1.09 16 29 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 30 H 0.05 0.84 5.62 -51.93 -0.29 0.55 16 31 H 0.05 1.03 7.91 -51.93 -0.41 0.61 16 32 H 0.07 1.63 4.81 -51.93 -0.25 1.38 16 33 H 0.05 1.14 8.14 -51.93 -0.42 0.72 16 34 H 0.27 7.87 8.73 -40.82 -0.36 7.51 16 35 H 0.41 7.76 7.99 -40.82 -0.33 7.43 16 36 H 0.43 4.96 7.73 -40.82 -0.32 4.64 16 37 H 0.17 2.29 5.45 -52.48 -0.29 2.00 16 38 H 0.14 0.61 8.06 -52.49 -0.42 0.19 16 39 H 0.14 0.47 6.27 -52.49 -0.33 0.14 16 40 H 0.06 0.16 7.65 -51.93 -0.40 -0.23 16 41 H 0.06 0.15 7.65 -51.93 -0.40 -0.25 16 42 H 0.10 0.27 8.14 -51.93 -0.42 -0.15 16 LS Contribution 357.62 15.07 5.39 5.39 Total: -1.00 -31.25 357.62 -4.94 -36.20 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: -4.67 Total: 9.46 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.36 Total: 1.99 kcal Atomic # 7 Polarization: -53.00 SS G_CDS: 1.20 Total: -51.80 kcal Atomic # 8 Polarization: -20.80 SS G_CDS: -0.04 Total: -20.84 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -4.47 Total: 19.60 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.25 -4.94 -36.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275732429.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.877 kcal (2) G-P(sol) polarization free energy of solvation -31.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.941 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds