Wall clock time and date at job start Tue Mar 31 2020 16:48:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47312 * 2 1 4 4 H 1.09005 * 109.46858 * 306.11059 * 3 2 1 5 5 C 1.50697 * 109.47197 * 186.11511 * 3 2 1 6 6 H 1.08003 * 120.00097 * 245.67582 * 5 3 2 7 7 C 1.37879 * 119.99897 * 65.67861 * 5 3 2 8 8 N 1.31522 * 119.99911 * 196.75541 * 7 5 3 9 9 Si 1.86797 * 120.00229 * 16.75341 * 7 5 3 10 10 H 1.48503 * 109.47179 * 179.97438 * 9 7 5 11 11 H 1.48498 * 109.47200 * 300.00141 * 9 7 5 12 12 H 1.48501 * 109.47164 * 60.00496 * 9 7 5 13 13 N 1.46498 * 109.47651 * 66.10758 * 3 2 1 14 14 C 1.34776 * 120.00532 * 275.00691 * 13 3 2 15 15 O 1.21360 * 119.99845 * 359.97438 * 14 13 3 16 16 C 1.49334 * 120.00240 * 179.97438 * 14 13 3 17 17 O 1.21388 * 119.99843 * 359.97438 * 16 14 13 18 18 N 1.34776 * 120.00201 * 179.97438 * 16 14 13 19 19 C 1.39898 * 119.99948 * 185.66675 * 18 16 14 20 20 C 1.38396 * 120.02405 * 20.23563 * 19 18 16 21 21 C 1.39688 * 119.82629 * 179.74815 * 20 19 18 22 22 C 1.43196 * 120.06936 * 180.22967 * 21 20 19 23 23 N 9.16633 * 104.77683 * 236.94098 * 3 1 2 24 24 C 1.39775 * 119.86619 * 0.52029 * 21 20 19 25 25 C 1.37826 * 120.04432 * 359.75056 * 24 21 20 26 26 C 1.38785 * 120.17743 * 359.97438 * 25 24 21 27 27 O 1.35812 * 119.93137 * 179.97438 * 26 25 24 28 28 C 1.42900 * 117.00105 * 0.02562 * 27 26 25 29 29 H 1.08999 * 109.47355 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47236 * 300.00547 * 1 2 3 31 31 H 1.09003 * 109.47223 * 60.00011 * 1 2 3 32 32 H 1.09002 * 109.47236 * 239.99453 * 2 1 3 33 33 H 1.09003 * 109.46737 * 119.99393 * 2 1 3 34 34 H 0.96996 * 119.99766 * 354.92951 * 8 7 5 35 35 H 0.97005 * 119.99699 * 95.00123 * 13 3 2 36 36 H 0.96998 * 119.99348 * 5.67686 * 18 16 14 37 37 H 1.08006 * 120.08972 * 359.97410 * 20 19 18 38 38 H 1.07997 * 119.97713 * 179.72799 * 24 21 20 39 39 H 1.07993 * 119.90490 * 179.97438 * 25 24 21 40 40 H 1.08994 * 109.46558 * 299.99558 * 28 27 26 41 41 H 1.08990 * 109.47162 * 59.99799 * 28 27 26 42 42 H 1.08999 * 109.46579 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.5901 1.9869 -0.8303 5 6 3.5394 1.4451 -0.1514 6 1 4.1630 1.8008 0.6555 7 6 4.1151 0.9935 -1.3200 8 7 5.3928 0.6827 -1.3463 9 14 3.0804 0.8229 -2.8658 10 1 3.9292 0.3226 -3.9769 11 1 1.9737 -0.1355 -2.6175 12 1 2.5161 2.1467 -3.2323 13 7 1.6755 2.0894 1.2628 14 6 0.4605 2.6555 1.4039 15 8 -0.3314 2.6297 0.4846 16 6 0.0888 3.3145 2.6914 17 8 0.8807 3.3399 3.6110 18 7 -1.1260 3.8811 2.8323 19 6 -1.4319 4.6006 3.9924 20 6 -0.4141 5.0916 4.7913 21 6 -0.7242 5.8140 5.9460 22 6 0.3248 6.3287 6.7737 23 7 1.1577 6.7399 7.4283 24 6 -2.0606 6.0283 6.2950 25 6 -3.0700 5.5321 5.4985 26 6 -2.7639 4.8190 4.3478 27 8 -3.7625 4.3318 3.5668 28 6 -5.1025 4.5914 3.9900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3634 0.5138 -0.8900 32 1 1.8934 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8901 34 1 5.9464 0.8404 -0.5656 35 1 2.3086 2.1103 1.9975 36 1 -1.7881 3.7898 2.1294 37 1 0.6174 4.9199 4.5208 38 1 -2.3024 6.5828 7.1897 39 1 -4.1017 5.6986 5.7705 40 1 -5.2629 4.1557 4.9761 41 1 -5.2664 5.6679 4.0373 42 1 -5.8001 4.1481 3.2794 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275732429.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:45 Heat of formation + Delta-G solvation = -64.994267 kcal Electronic energy + Delta-G solvation = -27621.960054 eV Core-core repulsion = 23567.310914 eV Total energy + Delta-G solvation = -4054.649140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.38665 -41.17956 -39.90927 -38.85001 -37.43620 -37.22421 -36.01885 -34.48094 -33.17900 -31.71186 -31.19933 -29.34775 -28.31307 -26.38001 -24.50701 -24.34546 -23.62178 -21.93570 -21.30632 -20.71888 -19.97737 -19.16991 -18.84697 -18.10372 -17.52464 -17.27468 -16.94648 -16.73489 -16.41443 -15.74881 -15.56373 -15.37054 -15.07283 -15.02450 -14.82655 -14.81182 -14.52028 -14.46831 -14.07755 -13.83876 -13.64550 -13.52153 -13.40031 -13.20785 -12.67605 -12.58875 -12.45721 -12.28473 -12.12333 -12.00424 -11.79814 -11.75658 -11.40239 -11.12890 -10.62132 -10.48943 -10.02239 -9.79820 -8.99506 -8.82927 -6.47837 -0.33348 -0.09627 0.52635 1.19704 1.47749 1.53650 1.58850 1.72230 1.79438 2.12856 2.15753 2.43501 2.58743 2.78265 2.87897 2.99967 3.39019 3.73804 3.86362 4.05019 4.23543 4.30525 4.38999 4.42795 4.49897 4.54025 4.57789 4.68438 4.79898 4.88258 5.06218 5.09846 5.12034 5.14925 5.22299 5.24837 5.40839 5.49663 5.51527 5.61412 5.88622 5.97634 6.22667 6.41623 6.42825 6.48679 6.67311 6.97461 7.30019 8.57152 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.015702 B = 0.002977 C = 0.002587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.811100 B = 9403.839757 C =10821.461295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.139 4.139 3 C 0.251 3.749 4 H 0.039 0.961 5 C -0.620 4.620 6 H 0.034 0.966 7 C -0.005 4.005 8 N -0.926 5.926 9 Si 1.073 2.927 10 H -0.285 1.285 11 H -0.236 1.236 12 H -0.268 1.268 13 N -0.670 5.670 14 C 0.499 3.501 15 O -0.536 6.536 16 C 0.513 3.487 17 O -0.520 6.520 18 N -0.620 5.620 19 C 0.094 3.906 20 C -0.067 4.067 21 C -0.061 4.061 22 C 0.282 3.718 23 N -0.468 5.468 24 C -0.023 4.023 25 C -0.176 4.176 26 C 0.144 3.856 27 O -0.327 6.327 28 C 0.013 3.987 29 H 0.060 0.940 30 H 0.046 0.954 31 H 0.051 0.949 32 H 0.066 0.934 33 H 0.052 0.948 34 H 0.256 0.744 35 H 0.407 0.593 36 H 0.435 0.565 37 H 0.143 0.857 38 H 0.171 0.829 39 H 0.186 0.814 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.243 8.808 12.417 31.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.177 4.177 3 C 0.147 3.853 4 H 0.057 0.943 5 C -0.658 4.658 6 H 0.053 0.947 7 C -0.206 4.206 8 N -0.561 5.561 9 Si 0.894 3.106 10 H -0.211 1.211 11 H -0.161 1.161 12 H -0.194 1.194 13 N -0.319 5.319 14 C 0.279 3.721 15 O -0.415 6.415 16 C 0.295 3.705 17 O -0.396 6.396 18 N -0.266 5.266 19 C -0.001 4.001 20 C -0.090 4.090 21 C -0.065 4.065 22 C -0.032 4.032 23 N -0.145 5.145 24 C -0.044 4.044 25 C -0.195 4.195 26 C 0.095 3.905 27 O -0.240 6.240 28 C -0.080 4.080 29 H 0.079 0.921 30 H 0.065 0.935 31 H 0.070 0.930 32 H 0.084 0.916 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.243 0.757 36 H 0.274 0.726 37 H 0.161 0.839 38 H 0.188 0.812 39 H 0.203 0.797 40 H 0.095 0.905 41 H 0.098 0.902 42 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -25.860 8.779 11.601 29.672 hybrid contribution 0.729 0.369 1.535 1.739 sum -25.131 9.148 13.136 29.796 Atomic orbital electron populations 1.21804 0.94939 1.00954 1.01662 1.22279 0.95891 0.97658 1.01894 1.19003 0.93884 0.90219 0.82191 0.94327 1.22266 0.91443 1.48948 1.03171 0.94732 1.26986 0.97849 0.91672 1.04082 1.70986 1.08044 1.42945 1.34112 0.83729 0.75251 0.79060 0.72579 1.21060 1.16057 1.19360 1.46045 1.14400 1.53493 1.17971 1.19913 0.83522 0.80638 0.87997 1.90728 1.50090 1.59252 1.41414 1.20288 0.82733 0.79351 0.88087 1.90687 1.50723 1.57419 1.40815 1.42836 1.14896 1.49171 1.19739 1.16990 0.91193 1.01158 0.90761 1.21325 1.00287 0.94321 0.93062 1.15759 0.90124 1.05509 0.95109 1.25817 0.92648 0.92254 0.92462 1.81283 1.10323 1.11375 1.11495 1.21310 0.88412 0.95272 0.99418 1.21371 1.02456 1.01750 0.93931 1.18993 0.86025 0.94332 0.91168 1.86045 1.16393 1.72601 1.48976 1.23536 0.77924 1.03409 1.03140 0.92133 0.93538 0.93027 0.91590 0.92922 0.93424 0.75746 0.72554 0.83912 0.81166 0.79680 0.90495 0.90206 0.86648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.79 8.54 71.98 0.61 -4.18 16 2 C -0.14 -5.75 5.27 30.59 0.16 -5.59 16 3 C 0.25 11.47 1.81 44.24 0.08 11.55 16 4 H 0.04 1.85 6.24 -2.38 -0.01 1.84 16 5 C -0.62 -33.70 9.01 25.60 0.23 -33.47 16 6 H 0.03 2.03 7.96 -2.91 -0.02 2.01 16 7 C -0.01 -0.30 5.31 84.65 0.45 0.15 16 8 N -0.93 -56.03 13.70 21.45 0.29 -55.74 16 9 Si 1.07 48.24 26.28 68.60 1.80 50.04 16 10 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 11 H -0.24 -9.38 5.71 99.48 0.57 -8.81 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 13 N -0.67 -27.03 5.03 -447.56 -2.25 -29.28 16 14 C 0.50 17.89 6.51 87.23 0.57 18.46 16 15 O -0.54 -20.01 13.63 -3.28 -0.04 -20.06 16 16 C 0.51 15.79 7.72 87.23 0.67 16.46 16 17 O -0.52 -17.65 13.40 -3.36 -0.05 -17.70 16 18 N -0.62 -15.04 5.30 -304.61 -1.61 -16.66 16 19 C 0.09 1.96 6.50 38.22 0.25 2.21 16 20 C -0.07 -1.53 8.48 22.66 0.19 -1.34 16 21 C -0.06 -1.09 5.74 -21.31 -0.12 -1.22 16 22 C 0.28 6.53 15.33 88.33 1.35 7.88 16 23 N -0.47 -13.30 18.54 19.01 0.35 -12.95 16 24 C -0.02 -0.23 9.74 22.54 0.22 -0.01 16 25 C -0.18 -1.36 9.01 22.30 0.20 -1.15 16 26 C 0.14 2.03 6.71 22.73 0.15 2.18 16 27 O -0.33 -4.06 9.84 -91.44 -0.90 -4.96 16 28 C 0.01 0.04 9.81 113.37 1.11 1.15 16 29 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 30 H 0.05 1.61 5.62 -2.39 -0.01 1.60 16 31 H 0.05 1.83 7.91 -2.39 -0.02 1.82 16 32 H 0.07 2.82 4.81 -2.39 -0.01 2.81 16 33 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 34 H 0.26 15.71 8.73 -92.71 -0.81 14.90 16 35 H 0.41 16.24 7.99 -92.70 -0.74 15.50 16 36 H 0.43 9.51 7.73 -92.71 -0.72 8.80 16 37 H 0.14 4.06 5.45 -2.91 -0.02 4.05 16 38 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 39 H 0.19 -0.06 6.27 -2.91 -0.02 -0.08 16 40 H 0.08 0.01 7.65 -2.39 -0.02 -0.01 16 41 H 0.08 -0.03 7.65 -2.39 -0.02 -0.05 16 42 H 0.12 0.14 8.14 -2.39 -0.02 0.12 16 Total: -1.00 -71.37 357.62 3.21 -68.16 By element: Atomic # 1 Polarization: 26.55 SS G_CDS: -0.52 Total: 26.03 kcal Atomic # 6 Polarization: 6.97 SS G_CDS: 6.13 Total: 13.10 kcal Atomic # 7 Polarization: -111.40 SS G_CDS: -3.22 Total: -114.62 kcal Atomic # 8 Polarization: -41.72 SS G_CDS: -0.99 Total: -42.71 kcal Atomic # 14 Polarization: 48.24 SS G_CDS: 1.80 Total: 50.04 kcal Total: -71.37 3.21 -68.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275732429.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.162 kcal (2) G-P(sol) polarization free energy of solvation -71.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.211 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds