Wall clock time and date at job start Tue Mar 31 2020 16:48:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47143 * 2 1 4 4 H 1.09005 * 109.47064 * 55.00359 * 3 2 1 5 5 C 1.50706 * 109.46918 * 174.99862 * 3 2 1 6 6 H 1.08001 * 119.99475 * 120.00257 * 5 3 2 7 7 C 1.37874 * 120.00257 * 300.00137 * 5 3 2 8 8 N 1.31518 * 119.99869 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00105 * 180.02562 * 7 5 3 10 10 H 1.48495 * 109.47185 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.46896 * 120.00154 * 9 7 5 12 12 H 1.48496 * 109.47070 * 240.00085 * 9 7 5 13 13 N 1.46494 * 109.47468 * 294.99990 * 3 2 1 14 14 C 1.34781 * 119.99978 * 84.99949 * 13 3 2 15 15 O 1.21362 * 119.99957 * 0.02562 * 14 13 3 16 16 C 1.49333 * 120.00090 * 180.02562 * 14 13 3 17 17 O 1.21399 * 119.99826 * 359.97438 * 16 14 13 18 18 N 1.34771 * 120.00087 * 180.02562 * 16 14 13 19 19 C 1.39907 * 120.00259 * 184.47970 * 18 16 14 20 20 C 1.38404 * 120.02075 * 325.30814 * 19 18 16 21 21 C 1.39684 * 119.82564 * 179.97438 * 20 19 18 22 22 C 1.43194 * 120.06934 * 180.02562 * 21 20 19 23 23 N 9.34252 * 101.81655 * 124.11366 * 3 1 2 24 24 C 1.39776 * 119.86763 * 359.97438 * 21 20 19 25 25 C 1.37830 * 120.04507 * 0.02562 * 24 21 20 26 26 C 1.38782 * 120.17533 * 359.97438 * 25 24 21 27 27 O 1.35813 * 119.93465 * 180.27894 * 26 25 24 28 28 C 1.42902 * 116.99630 * 359.73070 * 27 26 25 29 29 H 1.08992 * 109.46919 * 299.99841 * 1 2 3 30 30 H 1.09001 * 109.46849 * 59.99837 * 1 2 3 31 31 H 1.08998 * 109.47269 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47092 * 239.99602 * 2 1 3 33 33 H 1.09001 * 109.46849 * 120.00163 * 2 1 3 34 34 H 0.97003 * 119.99899 * 179.97438 * 8 7 5 35 35 H 0.97003 * 120.00534 * 265.00350 * 13 3 2 36 36 H 0.96998 * 120.00448 * 4.48218 * 18 16 14 37 37 H 1.07999 * 120.09189 * 359.94833 * 20 19 18 38 38 H 1.07996 * 119.97877 * 180.02562 * 24 21 20 39 39 H 1.07997 * 119.91145 * 180.02562 * 25 24 21 40 40 H 1.09000 * 109.47036 * 179.97438 * 28 27 26 41 41 H 1.08999 * 109.47144 * 299.99254 * 28 27 26 42 42 H 1.09001 * 109.47140 * 59.99833 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5420 1.4442 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8783 1.2280 8 7 3.4062 0.3364 2.1729 9 14 6.0050 0.8811 1.3818 10 1 6.5988 1.5461 0.1943 11 1 6.3990 1.6165 2.6103 12 1 6.4971 -0.5176 1.4629 13 7 1.6525 2.0975 -1.2517 14 6 0.4352 2.6644 -1.3669 15 8 -0.3397 2.6327 -0.4334 16 6 0.0399 3.3317 -2.6430 17 8 0.8153 3.3638 -3.5766 18 7 -1.1771 3.8990 -2.7580 19 6 -1.5834 4.4413 -3.9820 20 6 -0.6582 5.0539 -4.8092 21 6 -1.0682 5.5935 -6.0307 22 6 -0.1153 6.2280 -6.8907 23 7 0.6412 6.7345 -7.5710 24 6 -2.4104 5.5118 -6.4122 25 6 -3.3272 4.9005 -5.5843 26 6 -2.9219 4.3638 -4.3703 27 8 -3.8284 3.7575 -3.5609 28 6 -5.1810 3.7141 -4.0198 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8293 -0.0621 2.9495 35 1 2.2720 2.1232 -1.9978 36 1 -1.7715 3.9315 -1.9921 37 1 0.3780 5.1151 -4.5109 38 1 -2.7293 5.9280 -7.3564 39 1 -4.3636 4.8382 -5.8814 40 1 -5.7990 3.2037 -3.2812 41 1 -5.5491 4.7300 -4.1624 42 1 -5.2264 3.1749 -4.9661 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275732432.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:48 Heat of formation + Delta-G solvation = -66.880688 kcal Electronic energy + Delta-G solvation = -27551.312546 eV Core-core repulsion = 23496.581604 eV Total energy + Delta-G solvation = -4054.730941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.26563 -41.11561 -39.77604 -38.84234 -37.36399 -37.12347 -35.94422 -34.30419 -32.80862 -31.70092 -31.14016 -29.17008 -28.29639 -26.40348 -24.88735 -24.44520 -23.50982 -21.82232 -21.17938 -20.58904 -19.64583 -19.06950 -18.19381 -17.91024 -17.45694 -17.18248 -16.99262 -16.64060 -16.50914 -15.97870 -15.44762 -15.42128 -15.05529 -14.99208 -14.78293 -14.77156 -14.60901 -13.91508 -13.78863 -13.52797 -13.43271 -13.36243 -13.21058 -13.11567 -12.92518 -12.72022 -12.55174 -12.19475 -12.10436 -12.07236 -11.96391 -11.60790 -11.56399 -11.08599 -10.62584 -10.52249 -9.83980 -9.79148 -9.04434 -8.18598 -6.35148 -0.29234 -0.03189 0.53373 1.29454 1.43736 1.46543 1.57415 1.61920 1.82724 2.18445 2.21313 2.39538 2.69284 2.79482 2.92535 3.11434 3.52377 3.75372 3.87717 4.05942 4.27491 4.44187 4.50308 4.53765 4.56761 4.60623 4.72168 4.73073 4.88342 5.03562 5.07268 5.14683 5.22502 5.24789 5.37854 5.40959 5.50754 5.57107 5.68562 5.79784 5.97099 6.12475 6.25809 6.44299 6.55876 6.67997 6.80852 7.12154 7.36929 8.86730 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.015173 B = 0.002885 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1844.983980 B = 9703.734063 C =11309.284131 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.276 3.724 4 H 0.016 0.984 5 C -0.553 4.553 6 H 0.067 0.933 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.967 3.033 10 H -0.266 1.266 11 H -0.281 1.281 12 H -0.277 1.277 13 N -0.672 5.672 14 C 0.496 3.504 15 O -0.544 6.544 16 C 0.516 3.484 17 O -0.522 6.522 18 N -0.626 5.626 19 C 0.086 3.914 20 C -0.046 4.046 21 C -0.064 4.064 22 C 0.283 3.717 23 N -0.468 5.468 24 C -0.017 4.017 25 C -0.181 4.181 26 C 0.149 3.851 27 O -0.327 6.327 28 C 0.013 3.987 29 H 0.036 0.964 30 H 0.040 0.960 31 H 0.049 0.951 32 H 0.039 0.961 33 H 0.078 0.922 34 H 0.267 0.733 35 H 0.408 0.592 36 H 0.432 0.568 37 H 0.134 0.866 38 H 0.172 0.828 39 H 0.185 0.815 40 H 0.113 0.887 41 H 0.081 0.919 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.154 7.588 -14.866 26.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.162 4.162 3 C 0.174 3.826 4 H 0.034 0.966 5 C -0.591 4.591 6 H 0.085 0.915 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.792 3.208 10 H -0.191 1.191 11 H -0.207 1.207 12 H -0.203 1.203 13 N -0.321 5.321 14 C 0.276 3.724 15 O -0.423 6.423 16 C 0.298 3.702 17 O -0.398 6.398 18 N -0.273 5.273 19 C -0.008 4.008 20 C -0.068 4.068 21 C -0.068 4.068 22 C -0.031 4.031 23 N -0.144 5.144 24 C -0.038 4.038 25 C -0.199 4.199 26 C 0.099 3.901 27 O -0.240 6.240 28 C -0.081 4.081 29 H 0.055 0.945 30 H 0.059 0.941 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.097 0.903 34 H 0.076 0.924 35 H 0.243 0.757 36 H 0.271 0.729 37 H 0.152 0.848 38 H 0.190 0.810 39 H 0.202 0.798 40 H 0.131 0.869 41 H 0.100 0.900 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -18.924 8.122 -15.477 25.761 hybrid contribution 0.905 -0.307 0.785 1.236 sum -18.019 7.815 -14.692 24.528 Atomic orbital electron populations 1.21701 0.96458 0.99687 1.00450 1.21821 0.94235 0.98542 1.01652 1.18635 0.93997 0.89604 0.80348 0.96590 1.21556 0.91317 1.39385 1.06831 0.91488 1.25656 1.03043 0.94225 0.94931 1.70015 1.36860 1.38014 1.09798 0.85368 0.79405 0.77900 0.78112 1.19064 1.20725 1.20298 1.46238 1.14357 1.53175 1.18336 1.19967 0.83646 0.80908 0.87904 1.90737 1.51412 1.59784 1.40367 1.20311 0.82707 0.78994 0.88176 1.90734 1.51004 1.57990 1.40071 1.42826 1.16729 1.54992 1.12775 1.16941 0.91361 1.03461 0.89029 1.21026 1.00022 0.93182 0.92618 1.15727 0.91683 1.06145 0.93251 1.25774 0.92588 0.92237 0.92483 1.81291 1.09972 1.11763 1.11373 1.21321 0.88758 0.93718 1.00008 1.21381 1.02885 1.03017 0.92661 1.19162 0.87625 0.92667 0.90613 1.86091 1.20294 1.72383 1.45222 1.23536 0.77606 1.04087 1.02845 0.94488 0.94104 0.93236 0.94235 0.90322 0.92376 0.75679 0.72896 0.84774 0.81029 0.79772 0.86883 0.90004 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.29 8.52 71.98 0.61 -4.68 16 2 C -0.12 -5.88 5.45 30.59 0.17 -5.71 16 3 C 0.28 13.79 2.24 44.25 0.10 13.89 16 4 H 0.02 0.93 7.58 -2.38 -0.02 0.91 16 5 C -0.55 -29.09 8.73 25.60 0.22 -28.87 16 6 H 0.07 3.41 7.74 -2.91 -0.02 3.39 16 7 C 0.02 1.18 5.29 84.65 0.45 1.63 16 8 N -0.91 -50.34 11.29 21.45 0.24 -50.09 16 9 Si 0.97 41.99 29.54 68.60 2.03 44.01 16 10 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 11 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 12 H -0.28 -11.76 7.11 99.48 0.71 -11.06 16 13 N -0.67 -28.35 5.01 -447.55 -2.24 -30.59 16 14 C 0.50 19.20 6.45 87.23 0.56 19.77 16 15 O -0.54 -22.88 13.62 -3.29 -0.04 -22.92 16 16 C 0.52 16.74 7.73 87.23 0.67 17.42 16 17 O -0.52 -18.14 13.89 -3.40 -0.05 -18.19 16 18 N -0.63 -16.23 5.17 -304.60 -1.57 -17.80 16 19 C 0.09 1.87 6.32 38.22 0.24 2.12 16 20 C -0.05 -1.03 8.40 22.66 0.19 -0.84 16 21 C -0.06 -1.13 5.74 -21.31 -0.12 -1.25 16 22 C 0.28 6.34 15.33 88.32 1.35 7.69 16 23 N -0.47 -12.88 18.54 19.01 0.35 -12.52 16 24 C -0.02 -0.17 9.74 22.55 0.22 0.05 16 25 C -0.18 -1.51 9.01 22.30 0.20 -1.31 16 26 C 0.15 2.28 6.71 22.72 0.15 2.43 16 27 O -0.33 -4.75 10.04 -91.45 -0.92 -5.66 16 28 C 0.01 0.06 9.81 113.37 1.11 1.17 16 29 H 0.04 1.64 7.85 -2.39 -0.02 1.62 16 30 H 0.04 1.65 5.65 -2.39 -0.01 1.64 16 31 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.08 4.17 5.95 -2.39 -0.01 4.15 16 34 H 0.27 13.97 8.31 -92.71 -0.77 13.19 16 35 H 0.41 16.17 8.01 -92.71 -0.74 15.42 16 36 H 0.43 10.45 8.04 -92.71 -0.74 9.70 16 37 H 0.13 3.66 6.19 -2.91 -0.02 3.64 16 38 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 39 H 0.19 0.09 6.27 -2.91 -0.02 0.07 16 40 H 0.11 0.38 8.14 -2.39 -0.02 0.36 16 41 H 0.08 0.06 7.66 -2.39 -0.02 0.05 16 42 H 0.08 0.15 7.64 -2.39 -0.02 0.13 16 Total: -1.00 -68.38 363.23 3.55 -64.83 By element: Atomic # 1 Polarization: 25.81 SS G_CDS: -0.38 Total: 25.43 kcal Atomic # 6 Polarization: 17.37 SS G_CDS: 6.14 Total: 23.51 kcal Atomic # 7 Polarization: -107.79 SS G_CDS: -3.22 Total: -111.01 kcal Atomic # 8 Polarization: -45.76 SS G_CDS: -1.01 Total: -46.77 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -68.38 3.55 -64.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275732432.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.047 kcal (2) G-P(sol) polarization free energy of solvation -68.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds