Wall clock time and date at job start Tue Mar 31 2020 15:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35997 * 117.00270 * 2 1 4 4 C 1.38140 * 120.00362 * 359.97438 * 3 2 1 5 5 C 1.39741 * 119.85484 * 179.97438 * 4 3 2 6 6 C 1.47579 * 120.07243 * 180.02562 * 5 4 3 7 7 O 1.21596 * 120.00369 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99666 * 179.97438 * 6 5 4 9 9 C 1.40088 * 119.99634 * 179.97438 * 8 6 5 10 10 C 1.40423 * 125.97754 * 0.23340 * 9 8 6 11 11 C 1.35232 * 107.86638 * 180.14332 * 10 9 8 12 12 C 1.50703 * 126.06766 * 179.90771 * 11 10 9 13 13 N 1.34973 * 107.86541 * 359.64383 * 11 10 9 14 14 C 1.46494 * 125.97360 * 180.20622 * 13 11 10 15 15 C 1.50702 * 109.47377 * 90.00230 * 14 13 11 16 16 H 1.07999 * 119.99790 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00105 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00037 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99735 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.46879 * 60.00487 * 19 17 15 21 21 H 1.48503 * 109.46659 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47119 * 300.00103 * 19 17 15 23 23 N 1.31225 * 125.97317 * 179.97438 * 9 8 6 24 24 C 1.39715 * 119.85014 * 0.27504 * 5 4 3 25 25 C 1.37793 * 120.00605 * 359.47429 * 24 5 4 26 26 C 1.38839 * 120.14676 * 0.50235 * 25 24 5 27 27 O 1.35798 * 119.92516 * 179.74535 * 26 25 24 28 28 H 1.08997 * 109.46997 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46638 * 300.00296 * 1 2 3 30 30 H 1.08993 * 109.47038 * 59.99933 * 1 2 3 31 31 H 1.08002 * 120.07192 * 0.02562 * 4 3 2 32 32 H 0.96995 * 119.99757 * 0.02562 * 8 6 5 33 33 H 1.08000 * 126.06461 * 0.03932 * 10 9 8 34 34 H 1.09002 * 109.47152 * 269.68932 * 12 11 10 35 35 H 1.09001 * 109.46980 * 149.69032 * 12 11 10 36 36 H 1.09004 * 109.47113 * 29.69013 * 12 11 10 37 37 H 1.09000 * 109.47250 * 209.99659 * 14 13 11 38 38 H 1.08999 * 109.47203 * 329.99983 * 14 13 11 39 39 H 0.97005 * 120.00005 * 179.97438 * 18 17 15 40 40 H 1.08008 * 119.99490 * 179.71946 * 24 5 4 41 41 H 1.07994 * 119.92283 * 180.23400 * 25 24 5 42 42 H 0.96706 * 114.00233 * 270.02736 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2942 2.3703 -0.0005 5 6 1.9319 3.6138 0.0000 6 6 1.1330 4.8546 0.0000 7 8 -0.0815 4.7958 0.0000 8 7 1.7497 6.0531 0.0011 9 6 0.9913 7.2309 0.0005 10 6 -0.4108 7.3093 0.0036 11 6 -0.7531 8.6176 -0.0014 12 6 -2.1562 9.1675 -0.0024 13 7 0.3848 9.3434 0.0006 14 6 0.4728 10.8057 0.0011 15 6 0.5006 11.3070 1.4220 16 1 0.4567 10.6063 2.2427 17 6 0.5821 12.6600 1.6743 18 7 0.6361 13.5131 0.6750 19 14 0.6159 13.2812 3.4357 20 1 1.7947 12.7137 4.1381 21 1 0.7065 14.7635 3.4361 22 1 -0.6258 12.8604 4.1329 23 7 1.4669 8.4539 0.0019 24 6 3.3275 3.6795 -0.0047 25 6 4.0721 2.5201 0.0010 26 6 3.4386 1.2846 0.0010 27 8 4.1768 0.1448 0.0015 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 0.2156 2.3153 -0.0005 32 1 2.7185 6.1000 0.0014 33 1 -1.0943 6.4732 0.0073 34 1 -2.4934 9.3012 -1.0303 35 1 -2.1703 10.1282 0.5124 36 1 -2.8199 8.4709 0.5100 37 1 1.3838 11.1151 -0.5111 38 1 -0.3929 11.2219 -0.5141 39 1 0.6931 14.4651 0.8525 40 1 3.8228 4.6394 -0.0089 41 1 5.1507 2.5725 0.0012 42 1 4.3913 -0.1853 -0.8818 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000275971047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:38 Heat of formation + Delta-G solvation = -5.237639 kcal Electronic energy + Delta-G solvation = -26944.254894 eV Core-core repulsion = 22892.196995 eV Total energy + Delta-G solvation = -4052.057898 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.11018 -40.58335 -39.32972 -38.16505 -36.62242 -34.98641 -33.42565 -31.60963 -31.02753 -30.80037 -30.12623 -27.77976 -26.66766 -26.37553 -24.37121 -22.96143 -22.64452 -21.45139 -19.88980 -19.65942 -18.98559 -17.96429 -16.91505 -16.72703 -16.55921 -16.30906 -16.03536 -15.51494 -15.33689 -15.20197 -14.63058 -14.42378 -14.37655 -14.22636 -14.01240 -13.23489 -12.93660 -12.65084 -12.51234 -12.49811 -12.34600 -12.18258 -11.91860 -11.69949 -11.48205 -11.43078 -11.11611 -11.00411 -10.84239 -10.51463 -10.26954 -10.03794 -9.70244 -9.58017 -9.29842 -8.66207 -8.59938 -7.98658 -7.50487 -6.27647 -4.35590 0.34207 0.92605 2.34241 2.64400 2.79770 2.85965 3.22094 3.26020 3.29428 3.31205 3.70816 3.76860 3.81807 4.28167 4.40295 4.46349 4.66334 4.68170 4.84311 4.87380 5.05937 5.10391 5.19226 5.32076 5.37468 5.61361 5.69419 5.78392 5.84824 5.90367 6.06944 6.13324 6.18729 6.43434 6.50541 6.68396 6.77156 6.89891 7.02110 7.30434 7.37141 7.57879 7.64743 7.86243 8.01121 8.13449 8.59829 8.72072 9.30937 10.79572 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.021751 B = 0.002250 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.990443 B =12441.565639 C =13072.201121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.307 6.307 3 C 0.095 3.905 4 C -0.134 4.134 5 C -0.095 4.095 6 C 0.564 3.436 7 O -0.512 6.512 8 N -0.623 5.623 9 C 0.262 3.738 10 C -0.289 4.289 11 C 0.092 3.908 12 C -0.089 4.089 13 N -0.315 5.315 14 C 0.258 3.742 15 C -0.538 4.538 16 H 0.064 0.936 17 C 0.066 3.934 18 N -0.891 5.891 19 Si 0.907 3.093 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.274 1.274 23 N -0.318 5.318 24 C -0.105 4.105 25 C -0.112 4.112 26 C 0.100 3.900 27 O -0.485 6.485 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.149 0.851 32 H 0.410 0.590 33 H 0.160 0.840 34 H 0.071 0.929 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.052 0.948 38 H 0.055 0.945 39 H 0.269 0.731 40 H 0.137 0.863 41 H 0.145 0.855 42 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.261 -24.066 -4.483 24.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.220 6.220 3 C 0.049 3.951 4 C -0.154 4.154 5 C -0.099 4.099 6 C 0.351 3.649 7 O -0.386 6.386 8 N -0.270 5.270 9 C 0.009 3.991 10 C -0.320 4.320 11 C -0.039 4.039 12 C -0.147 4.147 13 N -0.098 5.098 14 C 0.141 3.859 15 C -0.576 4.576 16 H 0.082 0.918 17 C -0.137 4.137 18 N -0.529 5.529 19 Si 0.733 3.267 20 H -0.200 1.200 21 H -0.209 1.209 22 H -0.199 1.199 23 N -0.149 5.149 24 C -0.124 4.124 25 C -0.131 4.131 26 C 0.054 3.946 27 O -0.295 6.295 28 H 0.121 0.879 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.167 0.833 32 H 0.247 0.753 33 H 0.177 0.823 34 H 0.090 0.910 35 H 0.101 0.899 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.073 0.927 39 H 0.078 0.922 40 H 0.154 0.846 41 H 0.163 0.837 42 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 2.512 -23.199 -3.927 23.663 hybrid contribution -0.182 0.135 0.458 0.510 sum 2.330 -23.065 -3.469 23.440 Atomic orbital electron populations 1.23172 0.77910 1.04276 1.01995 1.86149 1.21662 1.25584 1.88610 1.19299 0.91680 0.84997 0.99137 1.21250 1.01280 0.90109 1.02728 1.19619 0.93385 0.92686 1.04185 1.18011 0.87519 0.82512 0.76895 1.90726 1.13359 1.86584 1.47974 1.42299 1.09966 1.02697 1.72084 1.18928 0.90737 0.85930 1.03478 1.21245 0.93374 0.96134 1.21224 1.21074 0.90766 0.91292 1.00795 1.20385 0.89485 1.02284 1.02566 1.49020 1.01072 1.07685 1.51987 1.19701 0.99828 0.67424 0.98960 1.21283 1.52766 0.92245 0.91343 0.91782 1.24925 0.94399 0.96271 0.98135 1.69908 1.48980 1.02921 1.31106 0.86409 0.78986 0.77540 0.83729 1.19974 1.20937 1.19910 1.77258 1.11619 0.96789 1.29188 1.21187 0.92335 0.98979 0.99912 1.21191 1.00994 0.90364 1.00533 1.17969 0.86134 0.86733 1.03798 1.84830 1.71882 1.39293 1.33491 0.87902 0.92162 0.92228 0.83325 0.75320 0.82309 0.91037 0.89853 0.90592 0.92955 0.92739 0.92167 0.84569 0.83747 0.75349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 101.05 0.99 1.13 16 2 O -0.31 -2.98 10.28 -34.39 -0.35 -3.34 16 3 C 0.09 0.97 6.69 -39.18 -0.26 0.71 16 4 C -0.13 -1.45 8.58 -39.06 -0.33 -1.79 16 5 C -0.10 -1.10 5.87 -104.97 -0.62 -1.71 16 6 C 0.56 8.37 7.73 -12.45 -0.10 8.28 16 7 O -0.51 -8.96 13.46 5.28 0.07 -8.89 16 8 N -0.62 -9.70 5.40 -12.06 -0.07 -9.76 16 9 C 0.26 5.29 8.11 -154.45 -1.25 4.04 16 10 C -0.29 -5.89 9.52 -39.83 -0.38 -6.27 16 11 C 0.09 1.93 6.92 -82.28 -0.57 1.36 16 12 C -0.09 -1.50 9.89 36.01 0.36 -1.14 16 13 N -0.32 -7.42 3.59 -58.33 -0.21 -7.63 16 14 C 0.26 6.57 5.81 -5.20 -0.03 6.54 16 15 C -0.54 -14.70 9.39 -34.44 -0.32 -15.02 16 16 H 0.06 1.81 7.81 -52.49 -0.41 1.40 16 17 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 18 N -0.89 -24.85 13.29 55.43 0.74 -24.12 16 19 Si 0.91 20.99 29.54 -169.99 -5.02 15.96 16 20 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 23 N -0.32 -7.27 12.59 31.43 0.40 -6.87 16 24 C -0.11 -0.95 9.53 -39.19 -0.37 -1.32 16 25 C -0.11 -0.91 9.96 -39.52 -0.39 -1.31 16 26 C 0.10 0.93 6.72 -38.93 -0.26 0.67 16 27 O -0.49 -4.03 13.27 -33.77 -0.45 -4.48 16 28 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.39 7.66 -51.93 -0.40 -0.01 16 30 H 0.06 0.35 7.66 -51.93 -0.40 -0.04 16 31 H 0.15 1.56 5.87 -52.49 -0.31 1.25 16 32 H 0.41 5.09 6.84 -40.82 -0.28 4.81 16 33 H 0.16 3.13 5.91 -52.49 -0.31 2.82 16 34 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.08 1.51 7.71 -51.93 -0.40 1.11 16 36 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 37 H 0.05 1.42 8.14 -51.93 -0.42 0.99 16 38 H 0.05 1.37 7.65 -51.93 -0.40 0.97 16 39 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 40 H 0.14 0.96 6.39 -52.48 -0.34 0.63 16 41 H 0.14 0.83 8.06 -52.49 -0.42 0.41 16 42 H 0.39 1.39 9.06 45.56 0.41 1.81 16 LS Contribution 364.22 15.07 5.49 5.49 Total: -1.00 -34.30 364.22 -7.12 -41.41 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -4.07 Total: 6.37 kcal Atomic # 6 Polarization: -0.52 SS G_CDS: -3.64 Total: -4.16 kcal Atomic # 7 Polarization: -49.23 SS G_CDS: 0.86 Total: -48.37 kcal Atomic # 8 Polarization: -15.97 SS G_CDS: -0.73 Total: -16.70 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.30 -7.12 -41.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275971047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.177 kcal (2) G-P(sol) polarization free energy of solvation -34.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds