Wall clock time and date at job start Tue Mar 31 2020 15:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35997 * 117.00270 * 2 1 4 4 C 1.38140 * 120.00362 * 359.97438 * 3 2 1 5 5 C 1.39741 * 119.85484 * 179.97438 * 4 3 2 6 6 C 1.47579 * 120.07243 * 180.02562 * 5 4 3 7 7 O 1.21596 * 120.00369 * 0.02562 * 6 5 4 8 8 N 1.34783 * 119.99666 * 179.97438 * 6 5 4 9 9 C 1.40088 * 119.99634 * 179.97438 * 8 6 5 10 10 C 1.40423 * 125.97754 * 0.23340 * 9 8 6 11 11 C 1.35232 * 107.86638 * 180.14332 * 10 9 8 12 12 C 1.50703 * 126.06766 * 179.90771 * 11 10 9 13 13 N 1.34973 * 107.86541 * 359.64383 * 11 10 9 14 14 C 1.46494 * 125.97360 * 180.20622 * 13 11 10 15 15 C 1.50702 * 109.47377 * 90.00230 * 14 13 11 16 16 H 1.07999 * 119.99790 * 359.97438 * 15 14 13 17 17 C 1.37876 * 120.00105 * 179.97438 * 15 14 13 18 18 N 1.31509 * 120.00037 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99735 * 179.97438 * 17 15 14 20 20 H 1.48492 * 109.46879 * 60.00487 * 19 17 15 21 21 H 1.48503 * 109.46659 * 179.97438 * 19 17 15 22 22 H 1.48495 * 109.47119 * 300.00103 * 19 17 15 23 23 N 1.31225 * 125.97317 * 179.97438 * 9 8 6 24 24 C 1.39715 * 119.85014 * 0.27504 * 5 4 3 25 25 C 1.37793 * 120.00605 * 359.47429 * 24 5 4 26 26 C 1.38839 * 120.14676 * 0.50235 * 25 24 5 27 27 O 1.35798 * 119.92516 * 179.74535 * 26 25 24 28 28 H 1.08997 * 109.46997 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.46638 * 300.00296 * 1 2 3 30 30 H 1.08993 * 109.47038 * 59.99933 * 1 2 3 31 31 H 1.08002 * 120.07192 * 0.02562 * 4 3 2 32 32 H 0.96995 * 119.99757 * 0.02562 * 8 6 5 33 33 H 1.08000 * 126.06461 * 0.03932 * 10 9 8 34 34 H 1.09002 * 109.47152 * 269.68932 * 12 11 10 35 35 H 1.09001 * 109.46980 * 149.69032 * 12 11 10 36 36 H 1.09004 * 109.47113 * 29.69013 * 12 11 10 37 37 H 1.09000 * 109.47250 * 209.99659 * 14 13 11 38 38 H 1.08999 * 109.47203 * 329.99983 * 14 13 11 39 39 H 0.97005 * 120.00005 * 179.97438 * 18 17 15 40 40 H 1.08008 * 119.99490 * 179.71946 * 24 5 4 41 41 H 1.07994 * 119.92283 * 180.23400 * 25 24 5 42 42 H 0.96706 * 114.00233 * 270.02736 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0465 1.2117 0.0000 4 6 1.2942 2.3703 -0.0005 5 6 1.9319 3.6138 0.0000 6 6 1.1330 4.8546 0.0000 7 8 -0.0815 4.7958 0.0000 8 7 1.7497 6.0531 0.0011 9 6 0.9913 7.2309 0.0005 10 6 -0.4108 7.3093 0.0036 11 6 -0.7531 8.6176 -0.0014 12 6 -2.1562 9.1675 -0.0024 13 7 0.3848 9.3434 0.0006 14 6 0.4728 10.8057 0.0011 15 6 0.5006 11.3070 1.4220 16 1 0.4567 10.6063 2.2427 17 6 0.5821 12.6600 1.6743 18 7 0.6361 13.5131 0.6750 19 14 0.6159 13.2812 3.4357 20 1 1.7947 12.7137 4.1381 21 1 0.7065 14.7635 3.4361 22 1 -0.6258 12.8604 4.1329 23 7 1.4669 8.4539 0.0019 24 6 3.3275 3.6795 -0.0047 25 6 4.0721 2.5201 0.0010 26 6 3.4386 1.2846 0.0010 27 8 4.1768 0.1448 0.0015 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 0.2156 2.3153 -0.0005 32 1 2.7185 6.1000 0.0014 33 1 -1.0943 6.4732 0.0073 34 1 -2.4934 9.3012 -1.0303 35 1 -2.1703 10.1282 0.5124 36 1 -2.8199 8.4709 0.5100 37 1 1.3838 11.1151 -0.5111 38 1 -0.3929 11.2219 -0.5141 39 1 0.6931 14.4651 0.8525 40 1 3.8228 4.6394 -0.0089 41 1 5.1507 2.5725 0.0012 42 1 4.3913 -0.1853 -0.8818 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000275971047.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:37 Heat of formation + Delta-G solvation = -28.819171 kcal Electronic energy + Delta-G solvation = -26945.277466 eV Core-core repulsion = 22892.196995 eV Total energy + Delta-G solvation = -4053.080470 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 2.01 seconds Orbital eigenvalues (eV) -42.41483 -41.64034 -40.50453 -38.83096 -37.39716 -36.44952 -35.34086 -33.16261 -32.67781 -31.58971 -31.03152 -28.76692 -28.15884 -27.88980 -25.58682 -24.57083 -23.41090 -22.63007 -21.34249 -20.98655 -19.78220 -18.97924 -18.77010 -17.94272 -17.53599 -17.37100 -17.01697 -16.89194 -16.58446 -16.22676 -16.12645 -15.67474 -15.50205 -15.13050 -15.04574 -14.71925 -14.33752 -13.85890 -13.80909 -13.68370 -13.57553 -13.29316 -13.20121 -13.15051 -12.84540 -12.68106 -12.50598 -12.25346 -12.17843 -12.09660 -11.67514 -11.58609 -11.39668 -11.07967 -10.73600 -10.04804 -9.62321 -9.34643 -9.14606 -8.33210 -6.50820 -0.49147 0.21711 0.96196 1.25832 1.38350 1.39895 1.45765 1.49803 2.09430 2.18250 2.25730 2.37671 2.63536 2.96739 3.07714 3.42396 3.71767 3.85365 3.95691 3.99564 4.13527 4.32609 4.34585 4.44211 4.46666 4.65447 4.70526 4.73035 4.76317 4.85933 4.88496 4.95586 5.00150 5.07413 5.08664 5.14130 5.26498 5.47880 5.53033 5.80391 5.87896 6.14226 6.19786 6.23957 6.60974 6.81255 6.88530 7.01915 7.20155 8.72670 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.021751 B = 0.002250 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.990443 B =12441.565639 C =13072.201121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.015 3.985 2 O -0.319 6.319 3 C 0.083 3.917 4 C -0.138 4.138 5 C -0.114 4.114 6 C 0.567 3.433 7 O -0.542 6.542 8 N -0.616 5.616 9 C 0.271 3.729 10 C -0.298 4.298 11 C 0.089 3.911 12 C -0.086 4.086 13 N -0.341 5.341 14 C 0.275 3.725 15 C -0.555 4.555 16 H 0.049 0.951 17 C 0.024 3.976 18 N -0.917 5.917 19 Si 0.970 3.030 20 H -0.276 1.276 21 H -0.273 1.273 22 H -0.266 1.266 23 N -0.354 5.354 24 C -0.096 4.096 25 C -0.106 4.106 26 C 0.106 3.894 27 O -0.494 6.494 28 H 0.126 0.874 29 H 0.058 0.942 30 H 0.063 0.937 31 H 0.145 0.855 32 H 0.424 0.576 33 H 0.167 0.833 34 H 0.094 0.906 35 H 0.067 0.933 36 H 0.102 0.898 37 H 0.026 0.974 38 H 0.053 0.947 39 H 0.274 0.726 40 H 0.156 0.844 41 H 0.174 0.826 42 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.851 -25.563 -3.921 26.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.233 6.233 3 C 0.037 3.963 4 C -0.158 4.158 5 C -0.117 4.117 6 C 0.356 3.644 7 O -0.418 6.418 8 N -0.266 5.266 9 C 0.017 3.983 10 C -0.329 4.329 11 C -0.042 4.042 12 C -0.144 4.144 13 N -0.124 5.124 14 C 0.157 3.843 15 C -0.593 4.593 16 H 0.068 0.932 17 C -0.177 4.177 18 N -0.555 5.555 19 Si 0.794 3.206 20 H -0.201 1.201 21 H -0.197 1.197 22 H -0.191 1.191 23 N -0.184 5.184 24 C -0.115 4.115 25 C -0.124 4.124 26 C 0.059 3.941 27 O -0.308 6.308 28 H 0.144 0.856 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.163 0.837 32 H 0.264 0.736 33 H 0.185 0.815 34 H 0.112 0.888 35 H 0.086 0.914 36 H 0.121 0.879 37 H 0.044 0.956 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.174 0.826 41 H 0.192 0.808 42 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges 3.120 -24.734 -3.389 25.160 hybrid contribution -0.326 0.379 0.225 0.548 sum 2.794 -24.356 -3.164 24.719 Atomic orbital electron populations 1.23384 0.76583 1.05853 1.02104 1.86131 1.23107 1.25395 1.88644 1.19432 0.92263 0.84913 0.99681 1.21236 1.01304 0.90270 1.02991 1.19378 0.94149 0.90986 1.07202 1.18566 0.87473 0.82948 0.75391 1.90692 1.14881 1.86975 1.49298 1.42381 1.10584 1.01531 1.72100 1.19249 0.91336 0.86527 1.01179 1.21437 0.93749 0.96127 1.21582 1.21756 0.91635 0.91463 0.99319 1.20511 0.87782 1.01914 1.04184 1.48819 1.02167 1.07125 1.54263 1.19258 0.98284 0.69005 0.97786 1.21406 1.53535 0.92561 0.91775 0.93249 1.25714 0.93622 0.96220 1.02166 1.69990 1.49139 1.03356 1.33027 0.85430 0.79031 0.77408 0.78779 1.20090 1.19727 1.19052 1.77178 1.12183 0.97697 1.31349 1.21412 0.91242 1.00405 0.98419 1.21467 1.02335 0.89323 0.99308 1.18188 0.85963 0.87536 1.02367 1.84768 1.71506 1.38980 1.35500 0.85632 0.92348 0.91852 0.83738 0.73607 0.81523 0.88790 0.91375 0.87923 0.95625 0.92934 0.91701 0.82627 0.80829 0.72810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.30 16 2 O -0.32 -5.82 10.28 -79.50 -0.82 -6.64 16 3 C 0.08 1.59 6.69 22.53 0.15 1.74 16 4 C -0.14 -2.91 8.58 22.61 0.19 -2.71 16 5 C -0.11 -2.50 5.87 -20.09 -0.12 -2.62 16 6 C 0.57 16.59 7.73 86.71 0.67 17.26 16 7 O -0.54 -18.99 13.46 -4.02 -0.05 -19.04 16 8 N -0.62 -18.90 5.40 -310.34 -1.67 -20.57 16 9 C 0.27 11.01 8.11 133.35 1.08 12.09 16 10 C -0.30 -12.18 9.52 22.11 0.21 -11.97 16 11 C 0.09 3.73 6.92 41.38 0.29 4.01 16 12 C -0.09 -2.84 9.89 71.24 0.70 -2.14 16 13 N -0.34 -16.47 3.59 -338.46 -1.22 -17.69 16 14 C 0.28 14.49 5.81 85.63 0.50 14.99 16 15 C -0.55 -30.97 9.39 25.60 0.24 -30.73 16 16 H 0.05 2.85 7.81 -2.91 -0.02 2.82 16 17 C 0.02 1.31 5.46 84.66 0.46 1.77 16 18 N -0.92 -51.52 13.29 21.45 0.28 -51.24 16 19 Si 0.97 42.87 29.54 68.60 2.03 44.89 16 20 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 21 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 23 N -0.35 -16.51 12.59 -54.48 -0.69 -17.19 16 24 C -0.10 -1.52 9.53 22.52 0.21 -1.30 16 25 C -0.11 -1.41 9.96 22.31 0.22 -1.18 16 26 C 0.11 1.72 6.72 22.69 0.15 1.88 16 27 O -0.49 -6.90 13.27 -77.27 -1.03 -7.93 16 28 H 0.13 0.90 8.14 -2.39 -0.02 0.88 16 29 H 0.06 0.73 7.66 -2.39 -0.02 0.71 16 30 H 0.06 0.72 7.66 -2.39 -0.02 0.70 16 31 H 0.14 3.05 5.87 -2.91 -0.02 3.03 16 32 H 0.42 10.13 6.84 -92.71 -0.63 9.49 16 33 H 0.17 6.53 5.91 -2.91 -0.02 6.51 16 34 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 35 H 0.07 2.47 7.71 -2.39 -0.02 2.45 16 36 H 0.10 2.81 8.14 -2.38 -0.02 2.79 16 37 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 38 H 0.05 2.73 7.65 -2.39 -0.02 2.71 16 39 H 0.27 14.39 8.31 -92.70 -0.77 13.62 16 40 H 0.16 1.78 6.39 -2.91 -0.02 1.76 16 41 H 0.17 1.28 8.06 -2.91 -0.02 1.26 16 42 H 0.41 1.79 9.06 -74.05 -0.67 1.11 16 Total: -1.00 -74.65 364.22 2.71 -71.93 By element: Atomic # 1 Polarization: 21.29 SS G_CDS: -0.21 Total: 21.08 kcal Atomic # 6 Polarization: -3.69 SS G_CDS: 6.08 Total: 2.39 kcal Atomic # 7 Polarization: -103.40 SS G_CDS: -3.29 Total: -106.69 kcal Atomic # 8 Polarization: -31.71 SS G_CDS: -1.90 Total: -33.61 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.89 kcal Total: -74.65 2.71 -71.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000275971047.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.114 kcal (2) G-P(sol) polarization free energy of solvation -74.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.01 seconds