Wall clock time and date at job start Tue Mar 31 2020 16:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47255 * 192.36900 * 3 2 1 5 5 C 1.37099 * 120.00091 * 264.09122 * 4 3 2 6 6 H 1.07998 * 120.00134 * 198.06556 * 5 4 3 7 7 C 1.38954 * 119.99908 * 18.05626 * 5 4 3 8 8 N 1.31415 * 119.99995 * 21.02332 * 7 5 4 9 9 Si 1.86803 * 120.00001 * 201.02174 * 7 5 4 10 10 H 1.48502 * 109.46762 * 90.00325 * 9 7 5 11 11 H 1.48501 * 109.47069 * 210.00043 * 9 7 5 12 12 H 1.48501 * 109.47069 * 330.00295 * 9 7 5 13 13 C 1.34770 * 120.00285 * 84.08917 * 4 3 2 14 14 O 1.21295 * 119.99983 * 0.02562 * 13 4 3 15 15 C 1.50706 * 120.00107 * 180.02562 * 13 4 3 16 16 C 1.53000 * 109.46873 * 179.97438 * 15 13 4 17 17 C 1.52999 * 109.47220 * 179.97438 * 16 15 13 18 18 N 1.46503 * 109.47603 * 179.97438 * 17 16 15 19 19 C 1.39661 * 120.00158 * 179.97438 * 18 17 16 20 20 C 1.38912 * 120.07904 * 359.72664 * 19 18 17 21 21 C 1.38103 * 119.92769 * 179.71832 * 20 19 18 22 22 C 1.38284 * 120.07466 * 0.55497 * 21 20 19 23 23 N 1.48003 * 119.92779 * 179.69599 * 22 21 20 24 24 O 1.21793 * 120.00124 * 180.02562 * 23 22 21 25 25 O 1.21806 * 119.99906 * 0.02562 * 23 22 21 26 26 C 1.38287 * 120.14932 * 359.72210 * 22 21 20 27 27 C 1.38101 * 120.07252 * 359.97438 * 26 22 21 28 28 H 4.40636 * 5.51530 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.47420 * 72.36532 * 3 2 1 30 30 H 1.08997 * 109.47426 * 312.36524 * 3 2 1 31 31 H 0.96996 * 120.00112 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47151 * 59.99824 * 15 13 4 33 33 H 1.08994 * 109.46657 * 299.99465 * 15 13 4 34 34 H 1.09000 * 109.47840 * 59.99462 * 16 15 13 35 35 H 1.09006 * 109.47461 * 299.99492 * 16 15 13 36 36 H 1.08997 * 109.47400 * 59.99488 * 17 16 15 37 37 H 1.09003 * 109.46739 * 299.99626 * 17 16 15 38 38 H 0.97009 * 119.99558 * 359.97438 * 18 17 16 39 39 H 1.08003 * 120.03557 * 359.97438 * 20 19 18 40 40 H 1.08002 * 119.96558 * 180.24948 * 21 20 19 41 41 H 1.08001 * 119.96278 * 180.02562 * 26 22 21 42 42 H 1.08010 * 120.03461 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3500 0.2959 5 6 3.4771 2.1946 -0.7280 6 1 4.0976 3.0565 -0.5320 7 6 3.0268 1.9417 -2.0180 8 7 1.9742 1.1783 -2.2087 9 14 3.9178 2.6866 -3.4812 10 1 4.9829 1.7578 -3.9374 11 1 2.9518 2.9130 -4.5861 12 1 4.5269 3.9811 -3.0831 13 6 3.2449 1.7611 1.5745 14 8 2.9415 1.0138 2.4804 15 6 3.7461 3.1494 1.8788 16 6 3.7755 3.3603 3.3939 17 6 4.2849 4.7695 3.7029 18 7 4.3125 4.9717 5.1537 19 6 4.7452 6.1905 5.6808 20 6 5.1553 7.2101 4.8312 21 6 5.5771 8.4161 5.3556 22 6 5.6025 8.6053 6.7252 23 7 6.0616 9.8966 7.2839 24 8 6.0849 10.0645 8.4899 25 8 6.4160 10.7915 6.5374 26 6 5.2004 7.5903 7.5741 27 6 4.7715 6.3841 7.0561 28 1 -1.0502 -0.0003 -0.0002 29 1 3.0095 -0.3105 -0.9794 30 1 3.0096 -0.6916 0.7593 31 1 1.6597 1.0020 -3.1091 32 1 3.0818 3.8836 1.4229 33 1 4.7515 3.2692 1.4754 34 1 4.4394 2.6261 3.8502 35 1 2.7698 3.2407 3.7970 36 1 3.6213 5.5040 3.2466 37 1 5.2907 4.8887 3.3000 38 1 4.0301 4.2590 5.7481 39 1 5.1403 7.0614 3.7616 40 1 5.8922 9.2107 4.6954 41 1 5.2211 7.7415 8.6433 42 1 4.4580 5.5917 7.7197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281969154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:10 Heat of formation + Delta-G solvation = 45.998921 kcal Electronic energy + Delta-G solvation = -26255.091009 eV Core-core repulsion = 22205.254895 eV Total energy + Delta-G solvation = -4049.836114 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.15417 -40.00547 -38.87971 -36.70868 -36.56059 -35.27859 -33.26449 -32.02545 -31.67523 -31.46520 -30.33281 -27.60535 -26.27250 -25.32848 -24.57216 -23.50901 -22.06237 -21.46040 -19.42542 -19.29680 -18.67424 -17.96795 -17.57079 -17.52100 -16.87516 -16.28449 -15.92478 -15.76281 -15.14332 -14.60745 -14.54259 -14.40788 -14.21407 -14.09647 -13.66461 -13.55687 -12.92046 -12.90456 -12.12789 -11.88941 -11.86825 -11.70959 -11.68419 -11.55828 -11.30526 -11.20802 -11.18311 -11.18134 -10.91717 -10.65174 -10.55627 -10.47969 -9.71523 -9.47833 -9.43173 -8.83375 -8.58751 -8.17346 -8.05790 -6.52356 -4.10858 -0.12869 0.74208 1.34197 1.45199 2.82910 2.98803 3.10323 3.12007 3.12258 3.59132 3.83490 4.01675 4.14065 4.18152 4.28062 4.55886 4.59257 4.70540 4.84014 4.89137 4.97444 5.09877 5.23472 5.32535 5.38281 5.56773 5.57761 5.60071 5.63964 5.68281 5.87185 5.97446 6.16978 6.34293 6.35346 6.42862 6.57195 6.68086 6.75302 7.07711 7.11675 7.23238 7.52945 7.64063 8.14925 8.87656 8.89794 9.28133 9.69645 10.46919 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.017890 B = 0.001991 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.704005 B =14061.982267 C =15304.333484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.100 4.100 3 C 0.241 3.759 4 N -0.436 5.436 5 C -0.350 4.350 6 H 0.102 0.898 7 C 0.039 3.961 8 N -0.848 5.848 9 Si 0.919 3.081 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.457 3.543 14 O -0.608 6.608 15 C -0.114 4.114 16 C -0.112 4.112 17 C 0.111 3.889 18 N -0.720 5.720 19 C 0.272 3.728 20 C -0.201 4.201 21 C -0.001 4.001 22 C -0.117 4.117 23 N 0.044 4.956 24 O -0.183 6.183 25 O -0.182 6.182 26 C -0.004 4.004 27 C -0.201 4.201 28 H 0.198 0.802 29 H 0.104 0.896 30 H 0.066 0.934 31 H 0.271 0.729 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.409 0.591 39 H 0.146 0.854 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.029 7.637 10.635 14.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 C -0.102 4.102 3 C 0.119 3.881 4 N -0.154 5.154 5 C -0.477 4.477 6 H 0.119 0.881 7 C -0.168 4.168 8 N -0.483 5.483 9 Si 0.745 3.255 10 H -0.202 1.202 11 H -0.210 1.210 12 H -0.194 1.194 13 C 0.246 3.754 14 O -0.495 6.495 15 C -0.155 4.155 16 C -0.150 4.150 17 C -0.013 4.013 18 N -0.343 5.343 19 C 0.161 3.839 20 C -0.224 4.224 21 C -0.022 4.022 22 C -0.204 4.204 23 N 0.557 4.443 24 O -0.395 6.395 25 O -0.393 6.393 26 C -0.024 4.024 27 C -0.224 4.224 28 H 0.215 0.785 29 H 0.121 0.879 30 H 0.084 0.916 31 H 0.082 0.918 32 H 0.105 0.895 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.245 0.755 39 H 0.164 0.836 40 H 0.168 0.832 41 H 0.167 0.833 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 4.561 6.533 10.367 13.075 hybrid contribution 0.012 0.492 -0.769 0.913 sum 4.573 7.025 9.598 12.744 Atomic orbital electron populations 1.24201 0.95336 1.02804 1.06742 1.23113 0.94326 0.97688 0.95033 1.18042 0.84277 0.84806 1.00994 1.43699 1.55367 1.11609 1.04689 1.19598 1.31524 1.09814 0.86745 0.88060 1.25316 0.94770 0.97389 0.99328 1.70113 1.18849 1.36536 1.22835 0.86066 0.79238 0.79417 0.80768 1.20175 1.20972 1.19383 1.20096 0.83434 0.88973 0.82860 1.90545 1.56568 1.56879 1.45500 1.21234 1.02797 0.97039 0.94394 1.21478 1.02676 0.93661 0.97216 1.21729 1.01652 0.98939 0.78937 1.45213 1.68193 1.12857 1.08070 1.18252 0.87212 0.86081 0.92350 1.20698 1.08558 0.92466 1.00676 1.20755 0.91673 0.97496 0.92249 1.20759 1.18980 0.86276 0.94395 1.43536 0.97568 1.02534 1.00657 1.94502 1.59427 1.87641 0.97890 1.94514 1.51023 1.36127 1.57675 1.20690 0.90837 0.90199 1.00676 1.20592 1.09923 0.98641 0.93269 0.78530 0.87858 0.91578 0.91788 0.89503 0.89906 0.90816 0.90790 0.91168 0.91191 0.75512 0.83586 0.83217 0.83298 0.83897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.27 -5.99 19.25 29.55 0.57 -5.42 16 2 C -0.10 -2.39 11.52 -37.13 -0.43 -2.81 16 3 C 0.24 5.58 5.06 -6.83 -0.03 5.55 16 4 N -0.44 -10.13 2.60 -117.94 -0.31 -10.43 16 5 C -0.35 -8.02 9.12 -14.93 -0.14 -8.15 16 6 H 0.10 2.13 6.57 -52.49 -0.34 1.79 16 7 C 0.04 0.90 4.87 -17.46 -0.09 0.82 16 8 N -0.85 -20.83 9.47 55.50 0.53 -20.30 16 9 Si 0.92 17.95 29.60 -169.99 -5.03 12.92 16 10 H -0.28 -5.40 7.11 56.52 0.40 -5.00 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.30 16 12 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 13 C 0.46 9.89 7.57 -10.99 -0.08 9.81 16 14 O -0.61 -14.56 15.66 5.54 0.09 -14.48 16 15 C -0.11 -1.82 4.16 -27.88 -0.12 -1.94 16 16 C -0.11 -1.41 4.62 -26.73 -0.12 -1.54 16 17 C 0.11 1.01 4.91 -4.04 -0.02 0.99 16 18 N -0.72 -5.80 5.73 -58.63 -0.34 -6.14 16 19 C 0.27 2.25 6.65 -83.79 -0.56 1.70 16 20 C -0.20 -1.67 9.31 -39.38 -0.37 -2.04 16 21 C 0.00 -0.01 9.55 -39.61 -0.38 -0.39 16 22 C -0.12 -1.24 6.85 -79.92 -0.55 -1.78 16 23 N 0.04 0.57 4.45 33.98 0.15 0.72 16 24 O -0.18 -2.49 18.44 -29.46 -0.54 -3.03 16 25 O -0.18 -2.50 18.44 -29.46 -0.54 -3.04 16 26 C 0.00 -0.03 9.55 -39.61 -0.38 -0.41 16 27 C -0.20 -1.51 9.90 -39.38 -0.39 -1.90 16 28 H 0.20 3.53 7.80 -54.08 -0.42 3.11 16 29 H 0.10 2.41 6.47 -51.93 -0.34 2.08 16 30 H 0.07 1.46 7.61 -51.93 -0.39 1.07 16 31 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 32 H 0.09 1.37 8.10 -51.93 -0.42 0.95 16 33 H 0.08 1.20 7.68 -51.93 -0.40 0.80 16 34 H 0.07 0.97 8.10 -51.93 -0.42 0.55 16 35 H 0.07 1.03 8.10 -51.93 -0.42 0.60 16 36 H 0.07 0.62 7.96 -51.93 -0.41 0.21 16 37 H 0.07 0.59 7.94 -51.93 -0.41 0.18 16 38 H 0.41 2.87 8.49 -40.82 -0.35 2.52 16 39 H 0.15 1.03 6.74 -52.48 -0.35 0.67 16 40 H 0.15 1.20 7.60 -52.49 -0.40 0.80 16 41 H 0.15 1.09 7.60 -52.49 -0.40 0.69 16 42 H 0.14 0.75 8.06 -52.48 -0.42 0.33 16 LS Contribution 371.74 15.07 5.60 5.60 Total: -1.00 -29.76 371.74 -8.51 -38.27 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: -5.04 Total: 7.43 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: -3.07 Total: -7.51 kcal Atomic # 7 Polarization: -36.19 SS G_CDS: 0.03 Total: -36.15 kcal Atomic # 8 Polarization: -19.55 SS G_CDS: -1.00 Total: -20.55 kcal Atomic # 14 Polarization: 17.95 SS G_CDS: -5.03 Total: 12.92 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -29.76 -8.51 -38.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281969154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.267 kcal (2) G-P(sol) polarization free energy of solvation -29.759 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.999 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds