Wall clock time and date at job start Tue Mar 31 2020 16:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47191 * 179.97438 * 2 1 4 4 N 1.46499 * 109.47255 * 192.36900 * 3 2 1 5 5 C 1.37099 * 120.00091 * 264.09122 * 4 3 2 6 6 H 1.07998 * 120.00134 * 198.06556 * 5 4 3 7 7 C 1.38954 * 119.99908 * 18.05626 * 5 4 3 8 8 N 1.31415 * 119.99995 * 21.02332 * 7 5 4 9 9 Si 1.86803 * 120.00001 * 201.02174 * 7 5 4 10 10 H 1.48502 * 109.46762 * 90.00325 * 9 7 5 11 11 H 1.48501 * 109.47069 * 210.00043 * 9 7 5 12 12 H 1.48501 * 109.47069 * 330.00295 * 9 7 5 13 13 C 1.34770 * 120.00285 * 84.08917 * 4 3 2 14 14 O 1.21295 * 119.99983 * 0.02562 * 13 4 3 15 15 C 1.50706 * 120.00107 * 180.02562 * 13 4 3 16 16 C 1.53000 * 109.46873 * 179.97438 * 15 13 4 17 17 C 1.52999 * 109.47220 * 179.97438 * 16 15 13 18 18 N 1.46503 * 109.47603 * 179.97438 * 17 16 15 19 19 C 1.39661 * 120.00158 * 179.97438 * 18 17 16 20 20 C 1.38912 * 120.07904 * 359.72664 * 19 18 17 21 21 C 1.38103 * 119.92769 * 179.71832 * 20 19 18 22 22 C 1.38284 * 120.07466 * 0.55497 * 21 20 19 23 23 N 1.48003 * 119.92779 * 179.69599 * 22 21 20 24 24 O 1.21793 * 120.00124 * 180.02562 * 23 22 21 25 25 O 1.21806 * 119.99906 * 0.02562 * 23 22 21 26 26 C 1.38287 * 120.14932 * 359.72210 * 22 21 20 27 27 C 1.38101 * 120.07252 * 359.97438 * 26 22 21 28 28 H 4.40636 * 5.51530 * 179.97438 * 4 1 2 29 29 H 1.09002 * 109.47420 * 72.36532 * 3 2 1 30 30 H 1.08997 * 109.47426 * 312.36524 * 3 2 1 31 31 H 0.96996 * 120.00112 * 179.97438 * 8 7 5 32 32 H 1.08998 * 109.47151 * 59.99824 * 15 13 4 33 33 H 1.08994 * 109.46657 * 299.99465 * 15 13 4 34 34 H 1.09000 * 109.47840 * 59.99462 * 16 15 13 35 35 H 1.09006 * 109.47461 * 299.99492 * 16 15 13 36 36 H 1.08997 * 109.47400 * 59.99488 * 17 16 15 37 37 H 1.09003 * 109.46739 * 299.99626 * 17 16 15 38 38 H 0.97009 * 119.99558 * 359.97438 * 18 17 16 39 39 H 1.08003 * 120.03557 * 359.97438 * 20 19 18 40 40 H 1.08002 * 119.96558 * 180.24948 * 21 20 19 41 41 H 1.08001 * 119.96278 * 180.02562 * 26 22 21 42 42 H 1.08010 * 120.03461 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.3500 0.2959 5 6 3.4771 2.1946 -0.7280 6 1 4.0976 3.0565 -0.5320 7 6 3.0268 1.9417 -2.0180 8 7 1.9742 1.1783 -2.2087 9 14 3.9178 2.6866 -3.4812 10 1 4.9829 1.7578 -3.9374 11 1 2.9518 2.9130 -4.5861 12 1 4.5269 3.9811 -3.0831 13 6 3.2449 1.7611 1.5745 14 8 2.9415 1.0138 2.4804 15 6 3.7461 3.1494 1.8788 16 6 3.7755 3.3603 3.3939 17 6 4.2849 4.7695 3.7029 18 7 4.3125 4.9717 5.1537 19 6 4.7452 6.1905 5.6808 20 6 5.1553 7.2101 4.8312 21 6 5.5771 8.4161 5.3556 22 6 5.6025 8.6053 6.7252 23 7 6.0616 9.8966 7.2839 24 8 6.0849 10.0645 8.4899 25 8 6.4160 10.7915 6.5374 26 6 5.2004 7.5903 7.5741 27 6 4.7715 6.3841 7.0561 28 1 -1.0502 -0.0003 -0.0002 29 1 3.0095 -0.3105 -0.9794 30 1 3.0096 -0.6916 0.7593 31 1 1.6597 1.0020 -3.1091 32 1 3.0818 3.8836 1.4229 33 1 4.7515 3.2692 1.4754 34 1 4.4394 2.6261 3.8502 35 1 2.7698 3.2407 3.7970 36 1 3.6213 5.5040 3.2466 37 1 5.2907 4.8887 3.3000 38 1 4.0301 4.2590 5.7481 39 1 5.1403 7.0614 3.7616 40 1 5.8922 9.2107 4.6954 41 1 5.2211 7.7415 8.6433 42 1 4.4580 5.5917 7.7197 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281969154.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:58:09 Heat of formation + Delta-G solvation = 30.930316 kcal Electronic energy + Delta-G solvation = -26255.744433 eV Core-core repulsion = 22205.254895 eV Total energy + Delta-G solvation = -4050.489538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.05868 -40.75412 -40.48129 -37.59552 -37.52139 -36.91298 -34.37541 -33.73214 -33.18684 -32.31246 -31.23635 -28.95849 -27.63115 -26.58794 -25.80490 -24.34087 -22.92579 -22.32661 -20.95827 -20.22294 -19.60476 -19.52426 -18.48874 -18.44232 -18.32458 -17.85455 -16.88861 -16.82032 -16.24526 -16.03853 -15.75843 -15.73380 -15.16229 -14.78666 -14.69354 -14.44051 -14.25051 -14.10351 -13.85305 -13.40768 -13.15865 -12.91867 -12.74265 -12.64422 -12.54474 -12.33118 -12.20535 -12.19321 -12.12373 -12.04000 -11.94929 -11.35883 -11.22691 -11.19535 -10.62267 -10.34690 -10.31165 -9.84245 -8.83203 -8.26017 -5.89785 -1.00386 0.12755 0.52297 0.63255 1.44224 1.52779 1.61629 1.88886 2.10058 2.19746 2.33695 2.40754 2.46068 3.10783 3.21449 3.51721 3.66705 3.87336 3.92462 3.93358 4.03538 4.09075 4.21480 4.33766 4.49298 4.61266 4.65780 4.71525 4.76393 4.82082 4.89040 4.94412 4.98281 4.99943 5.22104 5.26006 5.34093 5.38222 5.49282 5.51339 5.80824 5.98977 6.38824 6.50288 6.64602 7.11205 7.13840 7.56767 7.98110 8.73522 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.017890 B = 0.001991 C = 0.001829 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.704005 B =14061.982267 C =15304.333484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.145 4.145 3 C 0.242 3.758 4 N -0.451 5.451 5 C -0.360 4.360 6 H 0.121 0.879 7 C -0.004 4.004 8 N -0.880 5.880 9 Si 0.985 3.015 10 H -0.277 1.277 11 H -0.294 1.294 12 H -0.253 1.253 13 C 0.444 3.556 14 O -0.637 6.637 15 C -0.107 4.107 16 C -0.100 4.100 17 C 0.120 3.880 18 N -0.714 5.714 19 C 0.273 3.727 20 C -0.200 4.200 21 C -0.004 4.004 22 C -0.136 4.136 23 N 0.047 4.953 24 O -0.204 6.204 25 O -0.210 6.210 26 C -0.006 4.006 27 C -0.193 4.193 28 H 0.233 0.767 29 H 0.093 0.907 30 H 0.064 0.936 31 H 0.268 0.732 32 H 0.092 0.908 33 H 0.102 0.898 34 H 0.066 0.934 35 H 0.058 0.942 36 H 0.080 0.920 37 H 0.085 0.915 38 H 0.415 0.585 39 H 0.163 0.837 40 H 0.156 0.844 41 H 0.159 0.841 42 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.315 8.223 10.490 14.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.279 4.279 2 C -0.146 4.146 3 C 0.119 3.881 4 N -0.169 5.169 5 C -0.486 4.486 6 H 0.138 0.862 7 C -0.208 4.208 8 N -0.516 5.516 9 Si 0.810 3.190 10 H -0.203 1.203 11 H -0.220 1.220 12 H -0.177 1.177 13 C 0.235 3.765 14 O -0.526 6.526 15 C -0.147 4.147 16 C -0.138 4.138 17 C -0.003 4.003 18 N -0.337 5.337 19 C 0.161 3.839 20 C -0.223 4.223 21 C -0.025 4.025 22 C -0.224 4.224 23 N 0.553 4.447 24 O -0.413 6.413 25 O -0.417 6.417 26 C -0.026 4.026 27 C -0.216 4.216 28 H 0.250 0.750 29 H 0.111 0.889 30 H 0.082 0.918 31 H 0.078 0.922 32 H 0.110 0.890 33 H 0.121 0.879 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.098 0.902 37 H 0.104 0.896 38 H 0.252 0.748 39 H 0.180 0.820 40 H 0.174 0.826 41 H 0.177 0.823 42 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 4.872 7.164 10.244 13.416 hybrid contribution -0.176 0.132 -0.714 0.747 sum 4.696 7.296 9.530 12.888 Atomic orbital electron populations 1.25111 0.96384 1.01265 1.05110 1.23559 0.95230 0.99232 0.96581 1.17936 0.84498 0.85454 1.00234 1.43974 1.55723 1.11614 1.05569 1.20046 1.31526 1.10237 0.86835 0.86153 1.26130 0.95141 0.97892 1.01629 1.70241 1.20300 1.38184 1.22905 0.85035 0.77634 0.79176 0.77162 1.20317 1.22025 1.17674 1.21137 0.82518 0.90846 0.81960 1.90514 1.57618 1.58334 1.46163 1.21236 1.03491 0.93114 0.96832 1.21304 1.01927 0.95884 0.94708 1.21578 1.02542 0.96589 0.79632 1.45129 1.67813 1.13002 1.07795 1.18371 0.86816 0.85943 0.92736 1.20879 1.07992 0.91938 1.01539 1.20897 0.91630 0.98152 0.91797 1.21010 1.20598 0.85442 0.95331 1.43892 0.97161 1.03246 1.00433 1.94474 1.60175 1.88143 0.98463 1.94491 1.52256 1.37313 1.57602 1.20888 0.90526 0.90071 1.01138 1.20837 1.08725 0.98618 0.93395 0.75027 0.88942 0.91824 0.92227 0.89004 0.87936 0.91488 0.92289 0.90207 0.89642 0.74780 0.81996 0.82615 0.82318 0.81405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -11.29 19.25 74.32 1.43 -9.86 16 2 C -0.14 -6.96 11.52 31.12 0.36 -6.60 16 3 C 0.24 11.44 5.06 84.57 0.43 11.87 16 4 N -0.45 -20.90 2.60 -645.43 -1.68 -22.58 16 5 C -0.36 -16.11 9.12 84.04 0.77 -15.34 16 6 H 0.12 4.77 6.57 -2.91 -0.02 4.75 16 7 C 0.00 -0.20 4.87 84.93 0.41 0.22 16 8 N -0.88 -43.43 9.47 21.66 0.21 -43.23 16 9 Si 0.99 35.99 29.60 68.60 2.03 38.02 16 10 H -0.28 -10.11 7.11 99.48 0.71 -9.40 16 11 H -0.29 -11.13 7.11 99.48 0.71 -10.42 16 12 H -0.25 -8.51 7.11 99.48 0.71 -7.80 16 13 C 0.44 18.98 7.57 87.66 0.66 19.65 16 14 O -0.64 -30.61 15.66 -3.07 -0.05 -30.66 16 15 C -0.11 -3.17 4.16 29.85 0.12 -3.04 16 16 C -0.10 -2.29 4.62 30.59 0.14 -2.15 16 17 C 0.12 1.76 4.91 86.38 0.42 2.18 16 18 N -0.71 -9.03 5.73 -339.42 -1.95 -10.97 16 19 C 0.27 3.63 6.65 38.22 0.25 3.88 16 20 C -0.20 -2.74 9.31 22.40 0.21 -2.53 16 21 C 0.00 -0.07 9.55 22.25 0.21 0.14 16 22 C -0.14 -2.73 6.85 36.40 0.25 -2.48 16 23 N 0.05 1.21 4.45 -46.42 -0.21 1.00 16 24 O -0.20 -5.62 18.44 18.89 0.35 -5.27 16 25 O -0.21 -5.90 18.44 18.88 0.35 -5.55 16 26 C -0.01 -0.09 9.55 22.25 0.21 0.12 16 27 C -0.19 -2.31 9.90 22.40 0.22 -2.09 16 28 H 0.23 7.84 7.80 -4.41 -0.03 7.80 16 29 H 0.09 4.48 6.47 -2.39 -0.02 4.46 16 30 H 0.06 2.93 7.61 -2.39 -0.02 2.91 16 31 H 0.27 12.77 8.31 -92.71 -0.77 12.00 16 32 H 0.09 2.67 8.10 -2.39 -0.02 2.65 16 33 H 0.10 2.66 7.68 -2.39 -0.02 2.64 16 34 H 0.07 1.64 8.10 -2.39 -0.02 1.62 16 35 H 0.06 1.54 8.10 -2.38 -0.02 1.52 16 36 H 0.08 1.08 7.96 -2.39 -0.02 1.07 16 37 H 0.09 1.06 7.94 -2.39 -0.02 1.04 16 38 H 0.42 4.47 8.49 -92.70 -0.79 3.69 16 39 H 0.16 1.67 6.74 -2.91 -0.02 1.65 16 40 H 0.16 2.31 7.60 -2.91 -0.02 2.29 16 41 H 0.16 2.08 7.60 -2.91 -0.02 2.06 16 42 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 Total: -1.00 -65.07 371.74 5.44 -59.64 By element: Atomic # 1 Polarization: 25.37 SS G_CDS: 0.28 Total: 25.64 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 6.11 Total: -6.04 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -3.63 Total: -75.78 kcal Atomic # 8 Polarization: -42.13 SS G_CDS: 0.65 Total: -41.48 kcal Atomic # 14 Polarization: 35.99 SS G_CDS: 2.03 Total: 38.02 kcal Total: -65.07 5.44 -59.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281969154.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.566 kcal (2) G-P(sol) polarization free energy of solvation -65.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.636 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds