Wall clock time and date at job start Tue Mar 31 2020 16:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47247 * 2 1 4 4 C 1.34327 * 126.44483 * 90.00007 * 3 2 1 5 5 N 1.34476 * 107.66514 * 179.76825 * 4 3 2 6 6 C 1.30249 * 108.70458 * 0.41877 * 5 4 3 7 7 C 1.50698 * 125.61978 * 179.83889 * 6 5 4 8 8 N 1.46498 * 109.47076 * 89.69779 * 7 6 5 9 9 C 1.34775 * 119.99852 * 179.97438 * 8 7 6 10 10 O 1.21587 * 120.00606 * 359.97438 * 9 8 7 11 11 N 1.34786 * 119.99808 * 179.97438 * 9 8 7 12 12 C 1.39940 * 119.99924 * 175.49624 * 11 9 8 13 13 C 1.38965 * 120.03405 * 214.85221 * 12 11 9 14 14 C 1.38162 * 120.06281 * 179.74922 * 13 12 11 15 15 C 1.38168 * 120.14237 * 0.54483 * 14 13 12 16 16 C 1.38912 * 120.06691 * 359.71012 * 15 14 13 17 17 O 1.35749 * 120.03189 * 179.97438 * 16 15 14 18 18 C 1.34837 * 116.99999 * 5.36452 * 17 16 15 19 19 H 1.08000 * 119.99787 * 354.96227 * 18 17 16 20 20 C 1.38645 * 119.99854 * 174.96385 * 18 17 16 21 21 N 1.31564 * 120.00298 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00017 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46803 * 60.00227 * 22 20 18 24 24 H 1.48494 * 109.47235 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46965 * 300.00259 * 22 20 18 26 26 C 1.38708 * 120.03651 * 35.12421 * 12 11 9 27 27 O 1.33972 * 108.75884 * 359.57642 * 6 5 4 28 28 H 1.09008 * 109.47061 * 300.00030 * 1 2 3 29 29 H 1.09002 * 109.47419 * 59.99982 * 1 2 3 30 30 H 1.08998 * 109.47578 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47100 * 239.99411 * 2 1 3 32 32 H 1.09001 * 109.46789 * 119.99602 * 2 1 3 33 33 H 1.07999 * 126.16589 * 0.02562 * 4 3 2 34 34 H 1.09001 * 109.47121 * 209.69311 * 7 6 5 35 35 H 1.08991 * 109.47347 * 329.69587 * 7 6 5 36 36 H 0.97004 * 120.00006 * 359.97438 * 8 7 6 37 37 H 0.96998 * 119.99748 * 355.49340 * 11 9 8 38 38 H 1.07998 * 119.96589 * 359.97438 * 13 12 11 39 39 H 1.08005 * 119.92506 * 180.27892 * 14 13 12 40 40 H 1.07994 * 119.96499 * 179.72637 * 15 14 13 41 41 H 0.96997 * 119.99986 * 179.97438 * 21 20 18 42 42 H 1.08003 * 120.06734 * 359.96113 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2984 2.1732 1.0806 5 7 2.7277 3.3718 0.6477 6 6 2.7216 3.3721 -0.6548 7 6 3.1290 4.5262 -1.5341 8 7 4.5634 4.4401 -1.8193 9 6 5.1538 5.3726 -2.5929 10 8 4.4959 6.2850 -3.0545 11 7 6.4735 5.2936 -2.8549 12 6 7.0683 6.2063 -3.7333 13 6 8.1081 5.7990 -4.5605 14 6 8.6923 6.6983 -5.4317 15 6 8.2526 8.0074 -5.4755 16 6 7.2171 8.4219 -4.6475 17 8 6.7861 9.7084 -4.6908 18 6 7.3275 10.5040 -5.6353 19 1 8.1264 10.1333 -6.2604 20 6 6.8585 11.7977 -5.8040 21 7 5.8850 12.2491 -5.0428 22 14 7.6090 12.9001 -7.1121 23 1 7.4292 12.2764 -8.4476 24 1 6.9368 14.2240 -7.0890 25 1 9.0580 13.0764 -6.8390 26 6 6.6244 7.5197 -3.7754 27 8 2.2988 2.1755 -1.0840 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.1912 1.8687 2.1112 34 1 2.5697 4.4860 -2.4688 35 1 2.9159 5.4651 -1.0232 36 1 5.0882 3.7120 -1.4514 37 1 7.0110 4.6042 -2.4345 38 1 8.4574 4.7777 -4.5248 39 1 9.4972 6.3782 -6.0767 40 1 8.7142 8.7090 -6.1544 41 1 5.5572 13.1544 -5.1607 42 1 5.8189 7.8396 -3.1308 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000286836823.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:29 Heat of formation + Delta-G solvation = 2.274214 kcal Electronic energy + Delta-G solvation = -26385.217744 eV Core-core repulsion = 22333.485585 eV Total energy + Delta-G solvation = -4051.732160 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.77698 -40.35400 -38.70489 -36.73606 -35.45722 -35.08407 -34.39587 -34.05758 -32.18862 -30.42223 -29.30680 -28.36064 -26.74711 -25.21932 -24.09513 -22.73839 -22.23613 -21.43497 -21.27490 -20.68415 -18.68105 -18.26522 -17.45755 -17.06311 -16.91325 -16.00942 -15.72554 -15.25787 -15.11706 -14.99784 -14.78559 -14.50039 -14.21847 -13.99679 -13.69645 -13.50269 -13.41481 -13.25884 -13.02852 -12.72216 -12.42566 -12.26755 -11.81316 -11.70473 -11.69514 -11.47615 -11.19233 -10.95484 -10.88473 -10.74963 -10.44581 -10.03815 -9.68753 -9.34156 -9.23819 -9.11631 -8.75794 -7.62793 -7.12971 -6.36114 -3.95414 0.89470 2.01213 2.16817 2.21166 2.40328 2.80954 3.18172 3.18999 3.22497 3.30651 3.56975 4.01677 4.18544 4.19874 4.42716 4.57296 4.63504 4.65345 4.83789 5.03058 5.18093 5.19027 5.22656 5.27269 5.38357 5.43717 5.59597 5.65298 5.66841 5.85669 5.87751 6.08836 6.15501 6.26856 6.42452 6.53184 6.85260 7.06672 7.11266 7.23360 7.31032 7.40027 7.54847 7.86230 7.98430 8.08674 8.61984 9.08497 9.80422 10.81697 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023155 B = 0.001960 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.930916 B =14282.692606 C =15089.287673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.039 4.039 3 C -0.036 4.036 4 C -0.043 4.043 5 N -0.458 5.458 6 C 0.171 3.829 7 C 0.241 3.759 8 N -0.745 5.745 9 C 0.704 3.296 10 O -0.555 6.555 11 N -0.678 5.678 12 C 0.191 3.809 13 C -0.236 4.236 14 C -0.059 4.059 15 C -0.246 4.246 16 C 0.167 3.833 17 O -0.173 6.173 18 C -0.392 4.392 19 H 0.092 0.908 20 C 0.039 3.961 21 N -0.861 5.861 22 Si 0.941 3.059 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.270 1.270 26 C -0.185 4.185 27 O -0.193 6.193 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.085 0.915 32 H 0.099 0.901 33 H 0.185 0.815 34 H 0.099 0.901 35 H 0.114 0.886 36 H 0.398 0.602 37 H 0.402 0.598 38 H 0.107 0.893 39 H 0.111 0.889 40 H 0.127 0.873 41 H 0.270 0.730 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.432 -25.313 9.863 27.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.077 4.077 3 C -0.090 4.090 4 C -0.182 4.182 5 N -0.187 5.187 6 C -0.036 4.036 7 C 0.116 3.884 8 N -0.404 5.404 9 C 0.405 3.595 10 O -0.429 6.429 11 N -0.325 5.325 12 C 0.097 3.903 13 C -0.258 4.258 14 C -0.078 4.078 15 C -0.266 4.266 16 C 0.112 3.888 17 O -0.076 6.076 18 C -0.468 4.468 19 H 0.109 0.891 20 C -0.166 4.166 21 N -0.495 5.495 22 Si 0.766 3.234 23 H -0.195 1.195 24 H -0.203 1.203 25 H -0.195 1.195 26 C -0.207 4.207 27 O -0.079 6.079 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.103 0.897 32 H 0.117 0.883 33 H 0.202 0.798 34 H 0.117 0.883 35 H 0.132 0.868 36 H 0.232 0.768 37 H 0.237 0.763 38 H 0.125 0.875 39 H 0.129 0.871 40 H 0.145 0.855 41 H 0.080 0.920 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.234 -23.600 9.913 26.345 hybrid contribution 0.701 -0.869 -0.553 1.246 sum -5.533 -24.469 9.360 26.776 Atomic orbital electron populations 1.21815 0.93455 1.02759 1.02926 1.20112 0.96663 0.86285 1.04640 1.23625 1.04552 0.96236 0.84561 1.23142 1.04772 0.89765 1.00514 1.70498 1.16792 1.22412 1.09028 1.26104 1.00869 0.86353 0.90267 1.19299 0.81149 0.90865 0.97072 1.44947 1.08986 1.30510 1.55966 1.15796 0.82003 0.82328 0.79420 1.91054 1.63169 1.33863 1.54801 1.42394 1.07088 1.34810 1.48241 1.16939 0.94371 0.87595 0.91373 1.20234 1.03401 0.99441 1.02697 1.20478 0.97901 0.92791 0.96583 1.21175 1.02439 0.97047 1.05946 1.19139 0.91338 0.85680 0.92633 1.83995 1.58601 1.14971 1.50067 1.21291 1.18536 0.93750 1.13215 0.89063 1.25297 0.96244 0.96721 0.98320 1.70050 1.24871 1.17356 1.37258 0.85782 0.78895 0.78804 0.79918 1.19534 1.20343 1.19545 1.20202 1.05024 0.90431 1.05036 1.84432 1.63586 1.23334 1.36557 0.91959 0.92114 0.91194 0.89655 0.88295 0.79769 0.88291 0.86799 0.76833 0.76328 0.87468 0.87071 0.85491 0.92015 0.84588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.61 9.89 37.16 0.37 -0.24 16 2 C -0.04 -0.17 6.49 -27.88 -0.18 -0.35 16 3 C -0.04 -0.28 6.64 -35.69 -0.24 -0.52 16 4 C -0.04 -0.37 11.80 -17.77 -0.21 -0.58 16 5 N -0.46 -5.17 11.29 -11.10 -0.13 -5.30 16 6 C 0.17 1.81 7.71 -12.95 -0.10 1.71 16 7 C 0.24 2.63 6.30 -5.20 -0.03 2.60 16 8 N -0.75 -8.44 5.55 -66.42 -0.37 -8.80 16 9 C 0.70 11.09 8.41 -86.91 -0.73 10.36 16 10 O -0.55 -11.51 13.78 5.29 0.07 -11.43 16 11 N -0.68 -9.95 5.34 -14.24 -0.08 -10.03 16 12 C 0.19 3.61 6.30 -83.71 -0.53 3.09 16 13 C -0.24 -4.08 9.96 -39.34 -0.39 -4.47 16 14 C -0.06 -1.08 10.03 -39.64 -0.40 -1.48 16 15 C -0.25 -5.49 9.17 -39.36 -0.36 -5.85 16 16 C 0.17 4.26 6.64 -39.13 -0.26 4.00 16 17 O -0.17 -5.19 9.76 0.03 0.00 -5.19 16 18 C -0.39 -11.28 9.49 30.88 0.29 -10.99 16 19 H 0.09 2.40 5.20 -52.49 -0.27 2.13 16 20 C 0.04 1.09 5.49 -17.52 -0.10 1.00 16 21 N -0.86 -26.09 13.67 55.48 0.76 -25.33 16 22 Si 0.94 21.01 29.55 -169.99 -5.02 15.99 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 26 C -0.19 -4.34 8.64 -39.21 -0.34 -4.68 16 27 O -0.19 -1.94 10.78 5.36 0.06 -1.88 16 28 H 0.06 0.25 8.14 -51.92 -0.42 -0.17 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.10 0.23 8.14 -51.93 -0.42 -0.19 16 33 H 0.19 1.05 8.06 -52.49 -0.42 0.63 16 34 H 0.10 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 36 H 0.40 3.45 8.48 -40.82 -0.35 3.10 16 37 H 0.40 4.16 8.84 -40.82 -0.36 3.80 16 38 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 39 H 0.11 1.67 8.06 -52.48 -0.42 1.25 16 40 H 0.13 2.80 5.63 -52.49 -0.30 2.50 16 41 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 42 H 0.14 3.43 6.22 -52.48 -0.33 3.11 16 LS Contribution 367.85 15.07 5.54 5.54 Total: -1.00 -36.58 367.85 -7.33 -43.91 By element: Atomic # 1 Polarization: 13.89 SS G_CDS: -4.96 Total: 8.93 kcal Atomic # 6 Polarization: -3.19 SS G_CDS: -3.20 Total: -6.39 kcal Atomic # 7 Polarization: -49.65 SS G_CDS: 0.19 Total: -49.46 kcal Atomic # 8 Polarization: -18.64 SS G_CDS: 0.13 Total: -18.51 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -36.58 -7.33 -43.91 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286836823.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.180 kcal (2) G-P(sol) polarization free energy of solvation -36.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds