Wall clock time and date at job start Tue Mar 31 2020 16:21:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.47247 * 2 1 4 4 C 1.34327 * 126.44483 * 90.00007 * 3 2 1 5 5 N 1.34476 * 107.66514 * 179.76825 * 4 3 2 6 6 C 1.30249 * 108.70458 * 0.41877 * 5 4 3 7 7 C 1.50698 * 125.61978 * 179.83889 * 6 5 4 8 8 N 1.46498 * 109.47076 * 89.69779 * 7 6 5 9 9 C 1.34775 * 119.99852 * 179.97438 * 8 7 6 10 10 O 1.21587 * 120.00606 * 359.97438 * 9 8 7 11 11 N 1.34786 * 119.99808 * 179.97438 * 9 8 7 12 12 C 1.39940 * 119.99924 * 175.49624 * 11 9 8 13 13 C 1.38965 * 120.03405 * 214.85221 * 12 11 9 14 14 C 1.38162 * 120.06281 * 179.74922 * 13 12 11 15 15 C 1.38168 * 120.14237 * 0.54483 * 14 13 12 16 16 C 1.38912 * 120.06691 * 359.71012 * 15 14 13 17 17 O 1.35749 * 120.03189 * 179.97438 * 16 15 14 18 18 C 1.34837 * 116.99999 * 5.36452 * 17 16 15 19 19 H 1.08000 * 119.99787 * 354.96227 * 18 17 16 20 20 C 1.38645 * 119.99854 * 174.96385 * 18 17 16 21 21 N 1.31564 * 120.00298 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 120.00017 * 179.97438 * 20 18 17 23 23 H 1.48494 * 109.46803 * 60.00227 * 22 20 18 24 24 H 1.48494 * 109.47235 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.46965 * 300.00259 * 22 20 18 26 26 C 1.38708 * 120.03651 * 35.12421 * 12 11 9 27 27 O 1.33972 * 108.75884 * 359.57642 * 6 5 4 28 28 H 1.09008 * 109.47061 * 300.00030 * 1 2 3 29 29 H 1.09002 * 109.47419 * 59.99982 * 1 2 3 30 30 H 1.08998 * 109.47578 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47100 * 239.99411 * 2 1 3 32 32 H 1.09001 * 109.46789 * 119.99602 * 2 1 3 33 33 H 1.07999 * 126.16589 * 0.02562 * 4 3 2 34 34 H 1.09001 * 109.47121 * 209.69311 * 7 6 5 35 35 H 1.08991 * 109.47347 * 329.69587 * 7 6 5 36 36 H 0.97004 * 120.00006 * 359.97438 * 8 7 6 37 37 H 0.96998 * 119.99748 * 355.49340 * 11 9 8 38 38 H 1.07998 * 119.96589 * 359.97438 * 13 12 11 39 39 H 1.08005 * 119.92506 * 180.27892 * 14 13 12 40 40 H 1.07994 * 119.96499 * 179.72637 * 15 14 13 41 41 H 0.96997 * 119.99986 * 179.97438 * 21 20 18 42 42 H 1.08003 * 120.06734 * 359.96113 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2984 2.1732 1.0806 5 7 2.7277 3.3718 0.6477 6 6 2.7216 3.3721 -0.6548 7 6 3.1290 4.5262 -1.5341 8 7 4.5634 4.4401 -1.8193 9 6 5.1538 5.3726 -2.5929 10 8 4.4959 6.2850 -3.0545 11 7 6.4735 5.2936 -2.8549 12 6 7.0683 6.2063 -3.7333 13 6 8.1081 5.7990 -4.5605 14 6 8.6923 6.6983 -5.4317 15 6 8.2526 8.0074 -5.4755 16 6 7.2171 8.4219 -4.6475 17 8 6.7861 9.7084 -4.6908 18 6 7.3275 10.5040 -5.6353 19 1 8.1264 10.1333 -6.2604 20 6 6.8585 11.7977 -5.8040 21 7 5.8850 12.2491 -5.0428 22 14 7.6090 12.9001 -7.1121 23 1 7.4292 12.2764 -8.4476 24 1 6.9368 14.2240 -7.0890 25 1 9.0580 13.0764 -6.8390 26 6 6.6244 7.5197 -3.7754 27 8 2.2988 2.1755 -1.0840 28 1 -0.3634 0.5139 0.8901 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.1912 1.8687 2.1112 34 1 2.5697 4.4860 -2.4688 35 1 2.9159 5.4651 -1.0232 36 1 5.0882 3.7120 -1.4514 37 1 7.0110 4.6042 -2.4345 38 1 8.4574 4.7777 -4.5248 39 1 9.4972 6.3782 -6.0767 40 1 8.7142 8.7090 -6.1544 41 1 5.5572 13.1544 -5.1607 42 1 5.8189 7.8396 -3.1308 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000286836823.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:28 Heat of formation + Delta-G solvation = -27.156487 kcal Electronic energy + Delta-G solvation = -26386.493955 eV Core-core repulsion = 22333.485585 eV Total energy + Delta-G solvation = -4053.008371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.50768 -41.74266 -40.44610 -38.39856 -36.49418 -35.82696 -35.58227 -35.01450 -34.23160 -31.50210 -30.85810 -29.74099 -27.67188 -27.23494 -24.64859 -24.02661 -23.24055 -22.99493 -22.10252 -21.98063 -20.02928 -19.89093 -18.96576 -18.25046 -17.74443 -17.30749 -16.90747 -16.69720 -16.29809 -16.14989 -15.88158 -15.85847 -15.55069 -15.45042 -15.22498 -14.61323 -14.35545 -14.20881 -14.20072 -14.04981 -13.56310 -13.47416 -13.15323 -12.94837 -12.64306 -12.62525 -12.52677 -12.34580 -12.14726 -12.13824 -11.64595 -11.57697 -11.31688 -10.97980 -10.74164 -10.43459 -9.85077 -9.28942 -8.83778 -8.43526 -6.13217 0.14246 0.49652 0.74490 1.20435 1.35888 1.48032 1.49808 1.53546 1.78054 1.96632 2.20741 2.81813 2.86532 3.06876 3.21038 3.59941 3.65517 3.95936 4.01316 4.18431 4.22243 4.28243 4.35417 4.40161 4.45554 4.48673 4.66667 4.71716 4.78058 4.86646 4.98395 5.00204 5.10481 5.13781 5.15936 5.19257 5.31672 5.38839 5.48892 5.67233 5.77879 5.85210 6.06490 6.24119 6.57837 6.85254 6.99847 7.37487 7.83443 8.80090 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023155 B = 0.001960 C = 0.001855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1208.930916 B =14282.692606 C =15089.287673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.038 4.038 3 C -0.027 4.027 4 C -0.057 4.057 5 N -0.480 5.480 6 C 0.159 3.841 7 C 0.244 3.756 8 N -0.721 5.721 9 C 0.703 3.297 10 O -0.609 6.609 11 N -0.662 5.662 12 C 0.200 3.800 13 C -0.203 4.203 14 C -0.048 4.048 15 C -0.256 4.256 16 C 0.126 3.874 17 O -0.236 6.236 18 C -0.413 4.413 19 H 0.107 0.893 20 C -0.029 4.029 21 N -0.925 5.925 22 Si 1.024 2.976 23 H -0.256 1.256 24 H -0.274 1.274 25 H -0.253 1.253 26 C -0.213 4.213 27 O -0.203 6.203 28 H 0.061 0.939 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.092 0.908 32 H 0.126 0.874 33 H 0.211 0.789 34 H 0.100 0.900 35 H 0.103 0.897 36 H 0.415 0.585 37 H 0.428 0.572 38 H 0.165 0.835 39 H 0.161 0.839 40 H 0.124 0.876 41 H 0.272 0.728 42 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.367 -29.647 9.453 31.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.075 4.075 3 C -0.081 4.081 4 C -0.196 4.196 5 N -0.211 5.211 6 C -0.047 4.047 7 C 0.119 3.881 8 N -0.380 5.380 9 C 0.403 3.597 10 O -0.487 6.487 11 N -0.311 5.311 12 C 0.105 3.895 13 C -0.223 4.223 14 C -0.066 4.066 15 C -0.275 4.275 16 C 0.075 3.925 17 O -0.142 6.142 18 C -0.489 4.489 19 H 0.124 0.876 20 C -0.226 4.226 21 N -0.563 5.563 22 Si 0.842 3.158 23 H -0.180 1.180 24 H -0.199 1.199 25 H -0.177 1.177 26 C -0.234 4.234 27 O -0.089 6.089 28 H 0.080 0.920 29 H 0.063 0.937 30 H 0.107 0.893 31 H 0.110 0.890 32 H 0.144 0.856 33 H 0.228 0.772 34 H 0.118 0.882 35 H 0.121 0.879 36 H 0.252 0.748 37 H 0.268 0.732 38 H 0.182 0.818 39 H 0.178 0.822 40 H 0.141 0.859 41 H 0.080 0.920 42 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -4.131 -28.075 9.553 29.942 hybrid contribution 0.040 0.014 -0.251 0.255 sum -4.091 -28.062 9.302 29.845 Atomic orbital electron populations 1.21817 0.93168 1.03769 1.02102 1.20360 0.96732 0.84096 1.06333 1.24388 1.02749 0.97192 0.83733 1.23625 1.04960 0.88977 1.02022 1.70468 1.17290 1.23965 1.09373 1.25731 1.02336 0.86620 0.90027 1.19190 0.80676 0.91023 0.97235 1.44681 1.09318 1.29671 1.54309 1.15968 0.82123 0.82188 0.79406 1.91047 1.64460 1.36244 1.56974 1.42153 1.06957 1.34416 1.47583 1.17063 0.94341 0.86369 0.91726 1.20860 1.00536 1.01607 0.99335 1.21026 0.98208 0.90770 0.96645 1.21332 1.01698 0.99163 1.05345 1.19683 0.93205 0.84987 0.94664 1.83961 1.61087 1.17227 1.51973 1.21877 1.19122 0.94390 1.13559 0.87574 1.26723 0.96680 0.98203 1.00958 1.70228 1.27679 1.18056 1.40350 0.84583 0.78484 0.76126 0.76557 1.18048 1.19858 1.17740 1.20217 1.05182 0.92675 1.05368 1.84432 1.63631 1.23268 1.37542 0.92032 0.93721 0.89278 0.88957 0.85559 0.77215 0.88160 0.87901 0.74814 0.73235 0.81801 0.82168 0.85875 0.91957 0.87951 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.88 9.89 71.98 0.71 -0.16 16 2 C -0.04 -0.22 6.49 29.85 0.19 -0.03 16 3 C -0.03 -0.38 6.64 24.79 0.16 -0.21 16 4 C -0.06 -0.89 11.80 83.39 0.98 0.10 16 5 N -0.48 -10.55 11.29 -303.84 -3.43 -13.98 16 6 C 0.16 3.31 7.71 88.34 0.68 3.99 16 7 C 0.24 5.43 6.30 85.63 0.54 5.97 16 8 N -0.72 -15.79 5.55 -482.31 -2.68 -18.47 16 9 C 0.70 22.04 8.41 179.05 1.51 23.54 16 10 O -0.61 -26.58 13.78 -3.99 -0.05 -26.64 16 11 N -0.66 -18.03 5.34 -317.22 -1.70 -19.73 16 12 C 0.20 7.26 6.30 38.13 0.24 7.50 16 13 C -0.20 -6.00 9.96 22.43 0.22 -5.77 16 14 C -0.05 -1.57 10.03 22.23 0.22 -1.35 16 15 C -0.26 -11.33 9.17 22.41 0.21 -11.12 16 16 C 0.13 6.77 6.64 22.56 0.15 6.92 16 17 O -0.24 -15.31 9.76 -22.81 -0.22 -15.53 16 18 C -0.41 -25.23 9.49 67.92 0.64 -24.58 16 19 H 0.11 5.82 5.20 -2.91 -0.02 5.80 16 20 C -0.03 -1.72 5.49 84.83 0.47 -1.25 16 21 N -0.92 -59.99 13.67 21.61 0.30 -59.69 16 22 Si 1.02 44.47 29.55 68.60 2.03 46.49 16 23 H -0.26 -10.40 7.11 99.48 0.71 -9.69 16 24 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 25 H -0.25 -10.16 7.11 99.48 0.71 -9.45 16 26 C -0.21 -10.43 8.64 22.51 0.19 -10.24 16 27 O -0.20 -3.86 10.78 -3.73 -0.04 -3.90 16 28 H 0.06 0.37 8.14 -2.38 -0.02 0.35 16 29 H 0.04 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.09 0.20 8.14 -2.39 -0.02 0.18 16 31 H 0.09 0.46 8.14 -2.39 -0.02 0.44 16 32 H 0.13 0.10 8.14 -2.39 -0.02 0.08 16 33 H 0.21 1.89 8.06 -2.91 -0.02 1.87 16 34 H 0.10 2.21 8.14 -2.39 -0.02 2.19 16 35 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 36 H 0.42 6.34 8.48 -92.71 -0.79 5.55 16 37 H 0.43 7.14 8.84 -92.71 -0.82 6.32 16 38 H 0.16 3.17 8.06 -2.91 -0.02 3.14 16 39 H 0.16 3.77 8.06 -2.91 -0.02 3.75 16 40 H 0.12 5.45 5.63 -2.91 -0.02 5.44 16 41 H 0.27 16.13 8.31 -92.71 -0.77 15.36 16 42 H 0.10 5.67 6.22 -2.91 -0.02 5.65 16 Total: -1.00 -89.87 367.85 0.82 -89.05 By element: Atomic # 1 Polarization: 29.61 SS G_CDS: -0.51 Total: 29.10 kcal Atomic # 6 Polarization: -13.84 SS G_CDS: 7.13 Total: -6.71 kcal Atomic # 7 Polarization: -104.36 SS G_CDS: -7.51 Total: -111.87 kcal Atomic # 8 Polarization: -45.75 SS G_CDS: -0.32 Total: -46.07 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -89.87 0.82 -89.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000286836823.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.895 kcal (2) G-P(sol) polarization free energy of solvation -89.868 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds