Wall clock time and date at job start Tue Mar 31 2020 16:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 110.52956 * 2 1 4 4 C 1.53002 * 109.47340 * 302.82813 * 3 2 1 5 5 C 1.50706 * 109.46925 * 180.02562 * 4 3 2 6 6 C 1.38231 * 119.99884 * 269.72543 * 5 4 3 7 7 C 1.38232 * 119.99941 * 179.77036 * 6 5 4 8 8 C 1.38241 * 119.99967 * 0.50748 * 7 6 5 9 9 C 1.38238 * 119.99768 * 359.74620 * 8 7 6 10 10 C 1.38234 * 120.00037 * 0.02562 * 9 8 7 11 11 N 1.47308 * 110.72954 * 237.07943 * 2 1 3 12 12 C 1.34521 * 106.62054 * 241.40813 * 11 2 1 13 13 O 1.21540 * 123.77186 * 180.02562 * 12 11 2 14 14 N 1.33795 * 112.45789 * 359.97438 * 12 11 2 15 15 N 1.40100 * 124.17891 * 180.02562 * 14 12 11 16 16 C 1.34780 * 120.00336 * 284.96550 * 15 14 12 17 17 O 1.21688 * 119.99760 * 359.97438 * 16 15 14 18 18 C 1.46368 * 119.99922 * 179.97438 * 16 15 14 19 19 H 1.07996 * 120.00383 * 359.97438 * 18 16 15 20 20 C 1.40057 * 119.99731 * 180.02562 * 18 16 15 21 21 N 1.30676 * 119.99950 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 119.99676 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47355 * 60.00158 * 22 20 18 24 24 H 1.48504 * 109.46569 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47255 * 299.99676 * 22 20 18 26 26 C 1.34769 * 111.64541 * 0.02562 * 14 12 11 27 27 O 1.21228 * 127.15919 * 180.02562 * 26 14 12 28 28 H 1.08993 * 109.47620 * 60.00059 * 1 2 3 29 29 H 1.09005 * 109.46781 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47301 * 299.99873 * 1 2 3 31 31 H 1.09004 * 109.46785 * 182.83120 * 3 2 1 32 32 H 1.09004 * 109.47694 * 62.83219 * 3 2 1 33 33 H 1.09000 * 109.46497 * 60.00561 * 4 3 2 34 34 H 1.09000 * 109.47312 * 300.00340 * 4 3 2 35 35 H 1.07997 * 120.00101 * 0.02562 * 6 5 4 36 36 H 1.08002 * 120.00546 * 180.23234 * 7 6 5 37 37 H 1.08001 * 120.00379 * 179.72801 * 8 7 6 38 38 H 1.08003 * 119.99873 * 179.97438 * 9 8 7 39 39 H 1.07997 * 119.99984 * 179.97438 * 10 9 8 40 40 H 0.97004 * 126.68951 * 61.38784 * 11 2 1 41 41 H 0.96993 * 119.99833 * 104.96566 * 15 14 12 42 42 H 0.96997 * 119.99446 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0666 1.4328 0.0000 4 6 1.5131 2.1847 -1.2121 5 6 2.0422 3.5959 -1.2124 6 6 1.3401 4.5973 -0.5682 7 6 1.8278 5.8907 -0.5644 8 6 3.0123 6.1848 -1.2137 9 6 3.7117 5.1842 -1.8624 10 6 3.2263 3.8899 -1.8622 11 7 2.0515 -0.7488 -1.1565 12 6 2.7646 -1.7757 -0.6602 13 8 3.3365 -2.5970 -1.3499 14 7 2.7749 -1.7915 0.6776 15 7 3.4426 -2.7523 1.4483 16 6 2.9327 -3.9943 1.5669 17 8 1.8921 -4.2809 1.0049 18 6 3.6306 -4.9981 2.3716 19 1 4.5543 -4.7438 2.8700 20 6 3.1010 -6.2889 2.4943 21 7 1.9835 -6.5967 1.8909 22 14 3.9913 -7.5698 3.5219 23 1 4.0999 -7.0918 4.9237 24 1 3.2302 -8.8447 3.4917 25 1 5.3510 -7.7912 2.9677 26 6 2.0637 -0.7690 1.1923 27 8 1.8880 -0.5163 2.3649 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.1553 1.4130 -0.0508 32 1 1.7546 1.9377 0.9143 33 1 0.4245 2.2044 -1.1613 34 1 1.8251 1.6799 -2.1264 35 1 0.4127 4.3684 -0.0644 36 1 1.2812 6.6725 -0.0579 37 1 3.3911 7.1961 -1.2145 38 1 4.6368 5.4140 -2.3700 39 1 3.7725 3.1083 -2.3693 40 1 1.9082 -0.5418 -2.0933 41 1 4.2718 -2.5237 1.8965 42 1 1.6166 -7.4906 1.9762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000291394521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:54 Heat of formation + Delta-G solvation = -25.922474 kcal Electronic energy + Delta-G solvation = -27994.702937 eV Core-core repulsion = 23941.748077 eV Total energy + Delta-G solvation = -4052.954860 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -42.12637 -39.58255 -38.18830 -37.54709 -36.40407 -34.97071 -33.71425 -32.55336 -31.26779 -31.15232 -30.28839 -28.51668 -26.48611 -25.51428 -23.40123 -22.84678 -22.45454 -21.24040 -20.38560 -19.70271 -18.10638 -17.52216 -17.08070 -16.38248 -16.11717 -15.83733 -15.67176 -15.36983 -15.33774 -15.18683 -14.49202 -14.16433 -13.83840 -13.80100 -13.62250 -13.30723 -13.07928 -12.88036 -12.65593 -12.48781 -12.46625 -12.11213 -11.82317 -11.47850 -11.42950 -11.22323 -11.06392 -11.00468 -10.67213 -10.55241 -10.32653 -9.95002 -9.60356 -9.32483 -9.19249 -8.97979 -8.94220 -8.08972 -7.87527 -6.34650 -4.82715 1.06434 1.12998 1.96236 2.09751 3.12587 3.16652 3.19093 3.25209 3.49147 3.54110 3.97710 4.08886 4.24187 4.42503 4.48947 4.62812 4.71677 4.79472 4.88769 4.92098 4.98151 5.04869 5.22998 5.29876 5.31970 5.46692 5.55066 5.58605 5.61637 5.73629 5.79467 5.81159 5.90736 6.03945 6.19417 6.24596 6.35749 6.73356 7.00715 7.23921 7.31595 7.43243 7.60230 7.97706 8.09754 8.74886 8.85139 9.12666 10.39287 10.57820 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.028031 B = 0.002490 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.660893 B =11243.387391 C =11253.634789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.130 3.870 3 C -0.106 4.106 4 C -0.081 4.081 5 C -0.080 4.080 6 C -0.116 4.116 7 C -0.119 4.119 8 C -0.126 4.126 9 C -0.119 4.119 10 C -0.116 4.116 11 N -0.724 5.724 12 C 0.705 3.295 13 O -0.525 6.525 14 N -0.365 5.365 15 N -0.536 5.536 16 C 0.556 3.444 17 O -0.557 6.557 18 C -0.526 4.526 19 H 0.077 0.923 20 C 0.086 3.914 21 N -0.762 5.762 22 Si 0.921 3.079 23 H -0.265 1.265 24 H -0.279 1.279 25 H -0.265 1.265 26 C 0.528 3.472 27 O -0.465 6.465 28 H 0.080 0.920 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.123 0.877 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.122 0.878 40 H 0.434 0.566 41 H 0.405 0.595 42 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.674 23.223 -6.187 24.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.038 3.962 3 C -0.145 4.145 4 C -0.118 4.118 5 C -0.080 4.080 6 C -0.134 4.134 7 C -0.137 4.137 8 C -0.144 4.144 9 C -0.137 4.137 10 C -0.134 4.134 11 N -0.391 5.391 12 C 0.406 3.594 13 O -0.396 6.396 14 N -0.195 5.195 15 N -0.292 5.292 16 C 0.361 3.639 17 O -0.435 6.435 18 C -0.564 4.564 19 H 0.095 0.905 20 C -0.135 4.135 21 N -0.390 5.390 22 Si 0.745 3.255 23 H -0.190 1.190 24 H -0.204 1.204 25 H -0.190 1.190 26 C 0.314 3.686 27 O -0.334 6.334 28 H 0.098 0.902 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.141 0.859 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.279 0.721 41 H 0.244 0.756 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.333 22.429 -6.295 23.334 hybrid contribution 0.795 -0.357 0.251 0.907 sum -0.538 22.072 -6.043 22.891 Atomic orbital electron populations 1.22062 0.90366 1.04491 1.03947 1.21390 0.97179 0.93138 0.84492 1.21786 1.01664 0.91071 0.99966 1.20660 1.01235 0.91451 0.98466 1.19846 0.95200 0.95247 0.97681 1.21093 1.00097 0.92759 0.99412 1.21158 0.96422 0.96691 0.99471 1.21160 0.95657 0.99266 0.98360 1.21163 0.99847 0.93169 0.99531 1.21114 0.95874 0.96770 0.99640 1.45532 1.55817 1.29357 1.08431 1.15894 0.79894 0.81888 0.81744 1.90995 1.47692 1.40167 1.60748 1.44873 1.46443 1.23304 1.04905 1.46466 1.26254 1.05327 1.51128 1.18922 0.85511 0.77878 0.81573 1.90634 1.25115 1.77274 1.50479 1.20570 1.09756 0.94163 1.31941 0.90494 1.25744 0.94406 0.98713 0.94649 1.70003 1.15967 1.20143 1.32839 0.86209 0.79879 0.79063 0.80366 1.19001 1.20384 1.18982 1.21047 0.77120 0.80498 0.89980 1.90745 1.56451 1.69586 1.16611 0.90156 0.90763 0.89864 0.90455 0.89073 0.89848 0.90557 0.85880 0.86136 0.86292 0.86154 0.85975 0.72147 0.75570 0.91585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 8.55 37.16 0.32 -1.32 16 2 C 0.13 1.68 1.01 -132.09 -0.13 1.54 16 3 C -0.11 -1.02 4.56 -26.73 -0.12 -1.15 16 4 C -0.08 -0.59 4.84 -27.88 -0.13 -0.72 16 5 C -0.08 -0.65 5.13 -104.62 -0.54 -1.19 16 6 C -0.12 -0.90 9.70 -39.59 -0.38 -1.29 16 7 C -0.12 -0.89 10.05 -39.58 -0.40 -1.29 16 8 C -0.13 -0.94 10.05 -39.58 -0.40 -1.34 16 9 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 10 C -0.12 -0.96 9.70 -39.58 -0.38 -1.34 16 11 N -0.72 -10.04 5.62 -52.94 -0.30 -10.34 16 12 C 0.71 14.46 8.54 -88.02 -0.75 13.71 16 13 O -0.53 -12.97 17.91 5.33 0.10 -12.88 16 14 N -0.36 -7.87 2.93 -15.79 -0.05 -7.92 16 15 N -0.54 -13.02 6.00 30.19 0.18 -12.84 16 16 C 0.56 16.31 7.80 -12.99 -0.10 16.21 16 17 O -0.56 -18.53 15.22 5.20 0.08 -18.45 16 18 C -0.53 -14.82 9.54 -35.63 -0.34 -15.16 16 19 H 0.08 1.93 7.85 -52.49 -0.41 1.52 16 20 C 0.09 2.39 5.50 -17.36 -0.10 2.29 16 21 N -0.76 -22.79 11.83 55.55 0.66 -22.14 16 22 Si 0.92 19.95 29.56 -169.99 -5.02 14.93 16 23 H -0.27 -5.55 7.11 56.52 0.40 -5.15 16 24 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 25 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 26 C 0.53 9.81 7.18 -10.55 -0.08 9.74 16 27 O -0.47 -9.58 18.01 5.60 0.10 -9.48 16 28 H 0.08 0.60 6.49 -51.93 -0.34 0.26 16 29 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.08 0.50 6.41 -51.93 -0.33 0.17 16 34 H 0.08 0.50 7.35 -51.93 -0.38 0.12 16 35 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 37 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 38 H 0.12 0.73 8.06 -52.48 -0.42 0.31 16 39 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 40 H 0.43 4.54 8.40 -40.82 -0.34 4.20 16 41 H 0.40 8.45 8.81 -182.60 -1.61 6.85 16 42 H 0.27 7.39 8.29 -40.82 -0.34 7.05 16 LS Contribution 367.05 15.07 5.53 5.53 Total: -1.00 -39.43 367.05 -9.01 -48.44 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: -6.35 Total: 7.77 kcal Atomic # 6 Polarization: 21.30 SS G_CDS: -3.94 Total: 17.36 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: 0.49 Total: -53.23 kcal Atomic # 8 Polarization: -41.08 SS G_CDS: 0.28 Total: -40.81 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -39.43 -9.01 -48.44 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291394521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.522 kcal (2) G-P(sol) polarization free energy of solvation -39.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.910 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.445 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds