Wall clock time and date at job start Tue Mar 31 2020 16:09:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 110.52956 * 2 1 4 4 C 1.53002 * 109.47340 * 302.82813 * 3 2 1 5 5 C 1.50706 * 109.46925 * 180.02562 * 4 3 2 6 6 C 1.38231 * 119.99884 * 269.72543 * 5 4 3 7 7 C 1.38232 * 119.99941 * 179.77036 * 6 5 4 8 8 C 1.38241 * 119.99967 * 0.50748 * 7 6 5 9 9 C 1.38238 * 119.99768 * 359.74620 * 8 7 6 10 10 C 1.38234 * 120.00037 * 0.02562 * 9 8 7 11 11 N 1.47308 * 110.72954 * 237.07943 * 2 1 3 12 12 C 1.34521 * 106.62054 * 241.40813 * 11 2 1 13 13 O 1.21540 * 123.77186 * 180.02562 * 12 11 2 14 14 N 1.33795 * 112.45789 * 359.97438 * 12 11 2 15 15 N 1.40100 * 124.17891 * 180.02562 * 14 12 11 16 16 C 1.34780 * 120.00336 * 284.96550 * 15 14 12 17 17 O 1.21688 * 119.99760 * 359.97438 * 16 15 14 18 18 C 1.46368 * 119.99922 * 179.97438 * 16 15 14 19 19 H 1.07996 * 120.00383 * 359.97438 * 18 16 15 20 20 C 1.40057 * 119.99731 * 180.02562 * 18 16 15 21 21 N 1.30676 * 119.99950 * 359.97438 * 20 18 16 22 22 Si 1.86800 * 119.99676 * 180.02562 * 20 18 16 23 23 H 1.48497 * 109.47355 * 60.00158 * 22 20 18 24 24 H 1.48504 * 109.46569 * 179.97438 * 22 20 18 25 25 H 1.48496 * 109.47255 * 299.99676 * 22 20 18 26 26 C 1.34769 * 111.64541 * 0.02562 * 14 12 11 27 27 O 1.21228 * 127.15919 * 180.02562 * 26 14 12 28 28 H 1.08993 * 109.47620 * 60.00059 * 1 2 3 29 29 H 1.09005 * 109.46781 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47301 * 299.99873 * 1 2 3 31 31 H 1.09004 * 109.46785 * 182.83120 * 3 2 1 32 32 H 1.09004 * 109.47694 * 62.83219 * 3 2 1 33 33 H 1.09000 * 109.46497 * 60.00561 * 4 3 2 34 34 H 1.09000 * 109.47312 * 300.00340 * 4 3 2 35 35 H 1.07997 * 120.00101 * 0.02562 * 6 5 4 36 36 H 1.08002 * 120.00546 * 180.23234 * 7 6 5 37 37 H 1.08001 * 120.00379 * 179.72801 * 8 7 6 38 38 H 1.08003 * 119.99873 * 179.97438 * 9 8 7 39 39 H 1.07997 * 119.99984 * 179.97438 * 10 9 8 40 40 H 0.97004 * 126.68951 * 61.38784 * 11 2 1 41 41 H 0.96993 * 119.99833 * 104.96566 * 15 14 12 42 42 H 0.96997 * 119.99446 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0666 1.4328 0.0000 4 6 1.5131 2.1847 -1.2121 5 6 2.0422 3.5959 -1.2124 6 6 1.3401 4.5973 -0.5682 7 6 1.8278 5.8907 -0.5644 8 6 3.0123 6.1848 -1.2137 9 6 3.7117 5.1842 -1.8624 10 6 3.2263 3.8899 -1.8622 11 7 2.0515 -0.7488 -1.1565 12 6 2.7646 -1.7757 -0.6602 13 8 3.3365 -2.5970 -1.3499 14 7 2.7749 -1.7915 0.6776 15 7 3.4426 -2.7523 1.4483 16 6 2.9327 -3.9943 1.5669 17 8 1.8921 -4.2809 1.0049 18 6 3.6306 -4.9981 2.3716 19 1 4.5543 -4.7438 2.8700 20 6 3.1010 -6.2889 2.4943 21 7 1.9835 -6.5967 1.8909 22 14 3.9913 -7.5698 3.5219 23 1 4.0999 -7.0918 4.9237 24 1 3.2302 -8.8447 3.4917 25 1 5.3510 -7.7912 2.9677 26 6 2.0637 -0.7690 1.1923 27 8 1.8880 -0.5163 2.3649 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8900 31 1 3.1553 1.4130 -0.0508 32 1 1.7546 1.9377 0.9143 33 1 0.4245 2.2044 -1.1613 34 1 1.8251 1.6799 -2.1264 35 1 0.4127 4.3684 -0.0644 36 1 1.2812 6.6725 -0.0579 37 1 3.3911 7.1961 -1.2145 38 1 4.6368 5.4140 -2.3700 39 1 3.7725 3.1083 -2.3693 40 1 1.9082 -0.5418 -2.0933 41 1 4.2718 -2.5237 1.8965 42 1 1.6166 -7.4906 1.9762 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000291394521.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:54 Heat of formation + Delta-G solvation = -55.471563 kcal Electronic energy + Delta-G solvation = -27995.984282 eV Core-core repulsion = 23941.748077 eV Total energy + Delta-G solvation = -4054.236205 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.61839 -40.19916 -39.78580 -39.45581 -37.89874 -36.67419 -34.93615 -34.61699 -32.56352 -31.80185 -31.67837 -29.28043 -28.54348 -26.54991 -24.66415 -24.09522 -23.38390 -22.26744 -21.58176 -21.29256 -19.99249 -19.17279 -18.03168 -17.89535 -17.68369 -17.21682 -17.08767 -16.80456 -16.34466 -16.05112 -15.91227 -15.46425 -15.36894 -14.81356 -14.69928 -14.68517 -14.24484 -14.01594 -13.90117 -13.70285 -13.39299 -13.32382 -12.90718 -12.83000 -12.78000 -12.73268 -12.14322 -12.10259 -12.03610 -11.84169 -11.64885 -11.50816 -11.37226 -10.99596 -10.61950 -10.15538 -10.08723 -9.74169 -9.53016 -8.43841 -7.04531 0.41813 0.46755 0.56387 0.58077 1.40277 1.43170 1.56904 1.90766 1.98720 2.23133 2.31549 2.64813 2.95504 3.20986 3.34769 3.44310 3.61093 4.00605 4.08195 4.23492 4.24422 4.30530 4.36183 4.38606 4.58965 4.69440 4.71314 4.73913 4.78333 4.97759 5.09963 5.14823 5.20631 5.26794 5.31153 5.48840 5.53894 5.65594 5.71045 5.72635 5.79531 5.95951 6.02723 6.20822 6.41876 6.69614 7.04010 7.14266 8.23726 8.51121 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.028031 B = 0.002490 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.660893 B =11243.387391 C =11253.634789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.147 3.853 3 C -0.096 4.096 4 C -0.074 4.074 5 C -0.089 4.089 6 C -0.124 4.124 7 C -0.130 4.130 8 C -0.136 4.136 9 C -0.133 4.133 10 C -0.131 4.131 11 N -0.689 5.689 12 C 0.697 3.303 13 O -0.578 6.578 14 N -0.379 5.379 15 N -0.538 5.538 16 C 0.540 3.460 17 O -0.610 6.610 18 C -0.554 4.554 19 H 0.102 0.898 20 C 0.027 3.973 21 N -0.816 5.816 22 Si 1.012 2.988 23 H -0.249 1.249 24 H -0.272 1.272 25 H -0.252 1.252 26 C 0.516 3.484 27 O -0.490 6.490 28 H 0.126 0.874 29 H 0.044 0.956 30 H 0.098 0.902 31 H 0.070 0.930 32 H 0.099 0.901 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.134 0.866 38 H 0.131 0.869 39 H 0.127 0.873 40 H 0.454 0.546 41 H 0.419 0.581 42 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.688 24.919 -5.971 25.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.056 3.944 3 C -0.134 4.134 4 C -0.111 4.111 5 C -0.090 4.090 6 C -0.142 4.142 7 C -0.148 4.148 8 C -0.154 4.154 9 C -0.150 4.150 10 C -0.149 4.149 11 N -0.358 5.358 12 C 0.397 3.603 13 O -0.453 6.453 14 N -0.211 5.211 15 N -0.292 5.292 16 C 0.346 3.654 17 O -0.494 6.494 18 C -0.591 4.591 19 H 0.120 0.880 20 C -0.189 4.189 21 N -0.444 5.444 22 Si 0.830 3.170 23 H -0.173 1.173 24 H -0.196 1.196 25 H -0.175 1.175 26 C 0.304 3.696 27 O -0.360 6.360 28 H 0.145 0.855 29 H 0.063 0.937 30 H 0.116 0.884 31 H 0.089 0.911 32 H 0.117 0.883 33 H 0.124 0.876 34 H 0.105 0.895 35 H 0.157 0.843 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.145 0.855 40 H 0.303 0.697 41 H 0.261 0.739 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -1.340 24.241 -6.089 25.030 hybrid contribution 0.788 -0.717 0.180 1.081 sum -0.552 23.524 -5.908 24.261 Atomic orbital electron populations 1.22182 0.87960 1.03544 1.07039 1.21606 0.98496 0.93614 0.80701 1.21776 1.01335 0.88460 1.01854 1.20661 1.02418 0.90706 0.97362 1.19933 0.95320 0.95642 0.98057 1.21371 1.00725 0.92824 0.99293 1.21458 0.96585 0.97269 0.99458 1.21449 0.95777 1.00054 0.98087 1.21412 1.00505 0.93297 0.99833 1.21324 0.96292 0.97215 1.00076 1.45369 1.53502 1.27136 1.09813 1.16157 0.80254 0.82644 0.81223 1.90950 1.50178 1.42507 1.61622 1.45274 1.47165 1.23134 1.05546 1.45817 1.26687 1.05579 1.51160 1.19310 0.85146 0.79463 0.81459 1.90575 1.27225 1.78970 1.52585 1.21219 1.10766 0.94950 1.32190 0.88028 1.27141 0.94990 1.01203 0.95570 1.70170 1.18254 1.21270 1.34727 0.84863 0.78506 0.75175 0.78498 1.17303 1.19623 1.17537 1.22139 0.76146 0.79950 0.91369 1.90718 1.57045 1.70137 1.18091 0.85526 0.93712 0.88359 0.91091 0.88294 0.87644 0.89504 0.84288 0.84534 0.84791 0.85062 0.85519 0.69740 0.73948 0.90987 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 8.55 71.98 0.62 -2.25 16 2 C 0.15 3.54 1.01 2.99 0.00 3.54 16 3 C -0.10 -1.60 4.56 30.59 0.14 -1.46 16 4 C -0.07 -0.81 4.84 29.85 0.14 -0.67 16 5 C -0.09 -1.22 5.13 -19.86 -0.10 -1.32 16 6 C -0.12 -1.59 9.70 22.27 0.22 -1.38 16 7 C -0.13 -1.65 10.05 22.27 0.22 -1.43 16 8 C -0.14 -1.78 10.05 22.27 0.22 -1.56 16 9 C -0.13 -1.86 10.05 22.27 0.22 -1.64 16 10 C -0.13 -1.93 9.70 22.27 0.22 -1.71 16 11 N -0.69 -18.38 5.62 -439.82 -2.47 -20.85 16 12 C 0.70 29.19 8.54 179.44 1.53 30.72 16 13 O -0.58 -29.63 17.91 -3.84 -0.07 -29.70 16 14 N -0.38 -16.85 2.93 -441.12 -1.29 -18.14 16 15 N -0.54 -27.14 6.00 -176.63 -1.06 -28.20 16 16 C 0.54 33.02 7.80 86.36 0.67 33.69 16 17 O -0.61 -42.65 15.22 -4.31 -0.07 -42.72 16 18 C -0.55 -31.88 9.54 24.83 0.24 -31.65 16 19 H 0.10 5.11 7.85 -2.91 -0.02 5.08 16 20 C 0.03 1.53 5.50 85.31 0.47 1.99 16 21 N -0.82 -50.38 11.83 21.84 0.26 -50.12 16 22 Si 1.01 40.78 29.56 68.60 2.03 42.81 16 23 H -0.25 -9.34 7.11 99.48 0.71 -8.63 16 24 H -0.27 -10.51 7.11 99.48 0.71 -9.80 16 25 H -0.25 -9.52 7.11 99.48 0.71 -8.81 16 26 C 0.52 19.27 7.18 87.94 0.63 19.90 16 27 O -0.49 -20.37 18.01 -2.87 -0.05 -20.42 16 28 H 0.13 1.29 6.49 -2.39 -0.02 1.27 16 29 H 0.04 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.10 1.67 8.14 -2.39 -0.02 1.65 16 31 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 32 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.11 0.73 6.41 -2.39 -0.02 0.71 16 34 H 0.09 0.79 7.35 -2.39 -0.02 0.78 16 35 H 0.14 1.26 8.06 -2.91 -0.02 1.23 16 36 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 37 H 0.13 1.24 8.06 -2.91 -0.02 1.21 16 38 H 0.13 1.42 8.06 -2.91 -0.02 1.40 16 39 H 0.13 1.64 8.06 -2.91 -0.02 1.61 16 40 H 0.45 8.51 8.40 -92.71 -0.78 7.73 16 41 H 0.42 18.16 8.81 -213.33 -1.88 16.28 16 42 H 0.28 15.57 8.29 -92.71 -0.77 14.80 16 Total: -1.00 -92.00 367.05 1.15 -90.85 By element: Atomic # 1 Polarization: 33.26 SS G_CDS: -1.57 Total: 31.69 kcal Atomic # 6 Polarization: 39.35 SS G_CDS: 5.45 Total: 44.80 kcal Atomic # 7 Polarization: -112.74 SS G_CDS: -4.57 Total: -117.31 kcal Atomic # 8 Polarization: -92.65 SS G_CDS: -0.19 Total: -92.83 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -92.00 1.15 -90.85 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000291394521.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.379 kcal (2) G-P(sol) polarization free energy of solvation -91.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds