Wall clock time and date at job start Tue Mar 31 2020 16:47:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21520 * 119.99872 * 0.02562 * 14 13 3 16 16 C 1.48059 * 119.99900 * 179.97438 * 14 13 3 17 17 C 1.39725 * 120.08659 * 0.02562 * 16 14 13 18 18 C 1.37296 * 119.89876 * 180.02562 * 17 16 14 19 19 C 1.40522 * 120.74700 * 359.93270 * 18 17 16 20 20 C 1.39394 * 119.52285 * 359.93010 * 19 18 17 21 21 C 1.38897 * 120.08134 * 179.72526 * 16 14 13 22 22 N 1.38434 * 123.43458 * 180.37395 * 20 19 18 23 23 C 1.32965 * 125.66794 * 319.01986 * 22 20 19 24 24 O 1.21273 * 119.03487 * 182.54918 * 23 22 20 25 25 C 1.50418 * 121.92904 * 2.53463 * 23 22 20 26 26 N 1.46292 * 108.83578 * 63.62517 * 25 23 22 27 27 C 1.33160 * 121.52133 * 297.01535 * 26 25 23 28 28 O 1.21561 * 117.74571 * 179.26031 * 27 26 25 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 36 36 H 1.07991 * 120.05018 * 0.03800 * 17 16 14 37 37 H 1.07996 * 119.62531 * 179.90401 * 18 17 16 38 38 H 1.07990 * 119.71910 * 0.07218 * 21 16 14 39 39 H 0.97003 * 117.16930 * 139.00554 * 22 20 19 40 40 H 1.08996 * 109.57813 * 303.82610 * 25 23 22 41 41 H 1.08995 * 109.58057 * 183.43055 * 25 23 22 42 42 H 0.97003 * 119.24399 * 117.03122 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3411 2.6318 0.4326 16 6 0.0433 3.3257 2.6324 17 6 0.9343 3.3637 3.7081 18 6 0.5667 3.9775 4.8799 19 6 -0.6994 4.5726 5.0127 20 6 -1.5899 4.5393 3.9409 21 6 -1.2086 3.9155 2.7511 22 7 -2.8526 5.1055 3.9804 23 6 -3.6929 5.0553 5.0096 24 8 -4.7921 5.5551 4.8970 25 6 -3.3202 4.3964 6.3095 26 7 -2.2023 5.1276 6.9061 27 6 -1.0186 5.2045 6.3011 28 8 -0.1418 5.8413 6.8519 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8292 -0.0609 -2.9500 35 1 2.2719 2.1231 1.9979 36 1 1.9106 2.9110 3.6178 37 1 1.2582 4.0029 5.7090 38 1 -1.8944 3.8883 1.9173 39 1 -3.1501 5.5803 3.1885 40 1 -3.0237 3.3641 6.1239 41 1 -4.1735 4.4172 6.9873 42 1 -2.3262 5.5663 7.7623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000293443982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:43 Heat of formation + Delta-G solvation = -72.169239 kcal Electronic energy + Delta-G solvation = -27913.323464 eV Core-core repulsion = 23858.363194 eV Total energy + Delta-G solvation = -4054.960270 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.76629 -39.83721 -39.55791 -38.20248 -35.93279 -35.23717 -35.14579 -32.59774 -31.72012 -30.90476 -30.04860 -28.23308 -27.19190 -25.47789 -23.44003 -22.86428 -21.89903 -21.21861 -20.31072 -19.57895 -18.47562 -18.25780 -17.51578 -17.26297 -16.91291 -16.20695 -16.00127 -15.44225 -15.12781 -14.91713 -14.70877 -14.61787 -14.50963 -13.96053 -13.79577 -13.48163 -13.25648 -12.88981 -12.82327 -12.68040 -12.14918 -11.75651 -11.60005 -11.33576 -11.19165 -11.03730 -10.92953 -10.86180 -10.52776 -10.38631 -10.27897 -9.73555 -9.69071 -9.32741 -9.28340 -9.13344 -8.74480 -8.58725 -7.98601 -6.20002 -4.29928 0.24795 0.83381 1.81646 2.13837 2.52103 2.70600 3.04630 3.19383 3.27886 3.29823 3.71203 3.74998 3.84791 4.02489 4.29408 4.33211 4.47522 4.76318 4.82300 4.93086 4.98880 5.11961 5.16290 5.50932 5.61915 5.87564 6.03814 6.08009 6.16919 6.28997 6.31072 6.36773 6.56452 6.58503 6.74416 6.94570 7.09653 7.22700 7.29822 7.40946 7.52013 7.61244 7.62409 7.79694 8.08399 8.47875 8.65984 8.91940 9.37500 10.85344 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.021080 B = 0.002746 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.952674 B =10194.598076 C =11097.517209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.269 3.731 4 H 0.052 0.948 5 C -0.536 4.536 6 H 0.063 0.937 7 C 0.068 3.932 8 N -0.881 5.881 9 Si 0.901 3.099 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.283 1.283 13 N -0.695 5.695 14 C 0.537 3.463 15 O -0.537 6.537 16 C -0.067 4.067 17 C -0.104 4.104 18 C -0.049 4.049 19 C -0.139 4.139 20 C 0.169 3.831 21 C -0.094 4.094 22 N -0.655 5.655 23 C 0.508 3.492 24 O -0.522 6.522 25 C 0.092 3.908 26 N -0.709 5.709 27 C 0.564 3.436 28 O -0.530 6.530 29 H 0.037 0.963 30 H 0.024 0.976 31 H 0.050 0.950 32 H 0.032 0.968 33 H 0.101 0.899 34 H 0.265 0.735 35 H 0.389 0.611 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.414 0.586 40 H 0.104 0.896 41 H 0.131 0.869 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.995 5.070 16.686 20.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.167 4.167 3 C 0.168 3.832 4 H 0.070 0.930 5 C -0.575 4.575 6 H 0.081 0.919 7 C -0.136 4.136 8 N -0.518 5.518 9 Si 0.729 3.271 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.209 1.209 13 N -0.342 5.342 14 C 0.321 3.679 15 O -0.416 6.416 16 C -0.071 4.071 17 C -0.123 4.123 18 C -0.068 4.068 19 C -0.145 4.145 20 C 0.074 3.926 21 C -0.115 4.115 22 N -0.300 5.300 23 C 0.293 3.707 24 O -0.396 6.396 25 C -0.036 4.036 26 N -0.364 5.364 27 C 0.351 3.649 28 O -0.407 6.407 29 H 0.056 0.944 30 H 0.043 0.957 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.119 0.881 34 H 0.075 0.925 35 H 0.223 0.777 36 H 0.161 0.839 37 H 0.162 0.838 38 H 0.168 0.832 39 H 0.253 0.747 40 H 0.122 0.878 41 H 0.149 0.851 42 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -10.602 5.337 16.063 19.973 hybrid contribution 1.087 0.256 0.137 1.125 sum -9.515 5.593 16.200 19.602 Atomic orbital electron populations 1.21850 0.98325 0.98210 1.01174 1.21946 0.92625 0.99612 1.02501 1.18883 0.94464 0.89263 0.80572 0.93008 1.21240 0.90511 1.39269 1.06460 0.91922 1.24878 0.98695 0.94693 0.95326 1.69891 1.35140 1.37454 1.09325 0.86395 0.84715 0.77818 0.78200 1.19676 1.20849 1.20856 1.46507 1.14067 1.54831 1.18828 1.18089 0.83390 0.79836 0.86541 1.90764 1.51419 1.59786 1.39634 1.20374 0.94027 0.97518 0.95217 1.21358 1.00077 0.98947 0.91959 1.21163 0.93271 0.94048 0.98323 1.19415 0.95562 1.05800 0.93690 1.17257 0.84220 0.96174 0.94997 1.21314 0.97113 0.95997 0.97107 1.42928 1.14161 1.53905 1.19038 1.20762 0.84310 0.79965 0.85646 1.90837 1.20825 1.45366 1.82579 1.21749 0.91894 0.97257 0.92658 1.45412 1.10451 1.55607 1.24945 1.17781 0.81995 0.80074 0.85056 1.90876 1.44701 1.40677 1.64433 0.94371 0.95713 0.93080 0.94877 0.88116 0.92517 0.77694 0.83893 0.83846 0.83248 0.74730 0.87827 0.85110 0.74724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.89 8.51 37.16 0.32 -2.57 16 2 C -0.13 -2.92 5.45 -26.73 -0.15 -3.06 16 3 C 0.27 6.31 2.24 -69.08 -0.15 6.16 16 4 H 0.05 1.42 7.58 -51.93 -0.39 1.02 16 5 C -0.54 -13.35 8.73 -34.44 -0.30 -13.65 16 6 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 7 C 0.07 1.73 5.29 -17.82 -0.09 1.64 16 8 N -0.88 -23.67 11.29 55.43 0.63 -23.05 16 9 Si 0.90 19.82 29.54 -169.99 -5.02 14.79 16 10 H -0.27 -5.85 7.11 56.52 0.40 -5.45 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 13 N -0.69 -12.99 4.97 -55.81 -0.28 -13.27 16 14 C 0.54 9.55 6.35 -12.23 -0.08 9.47 16 15 O -0.54 -11.30 13.46 5.35 0.07 -11.23 16 16 C -0.07 -0.89 5.86 -105.07 -0.62 -1.51 16 17 C -0.10 -1.13 9.52 -39.37 -0.37 -1.51 16 18 C -0.05 -0.49 9.41 -39.06 -0.37 -0.86 16 19 C -0.14 -1.44 5.49 -105.05 -0.58 -2.02 16 20 C 0.17 1.71 6.17 -83.93 -0.52 1.19 16 21 C -0.09 -1.11 9.35 -38.81 -0.36 -1.47 16 22 N -0.65 -5.92 4.90 -10.40 -0.05 -5.97 16 23 C 0.51 4.65 7.41 -11.92 -0.09 4.56 16 24 O -0.52 -6.40 17.80 5.56 0.10 -6.30 16 25 C 0.09 0.54 6.48 -5.44 -0.04 0.50 16 26 N -0.71 -5.10 5.29 -63.42 -0.34 -5.43 16 27 C 0.56 5.92 7.23 -13.43 -0.10 5.82 16 28 O -0.53 -7.29 17.29 5.31 0.09 -7.20 16 29 H 0.04 0.76 5.64 -51.93 -0.29 0.47 16 30 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.05 1.14 7.84 -51.93 -0.41 0.73 16 32 H 0.03 0.72 8.14 -51.93 -0.42 0.29 16 33 H 0.10 2.57 5.95 -51.93 -0.31 2.26 16 34 H 0.26 6.77 8.31 -40.82 -0.34 6.43 16 35 H 0.39 6.17 6.57 -40.82 -0.27 5.90 16 36 H 0.14 1.35 6.40 -52.49 -0.34 1.01 16 37 H 0.14 1.27 7.86 -52.49 -0.41 0.86 16 38 H 0.15 1.76 7.61 -52.49 -0.40 1.36 16 39 H 0.41 3.40 8.67 -40.82 -0.35 3.05 16 40 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.13 0.44 8.11 -51.93 -0.42 0.02 16 42 H 0.41 2.28 8.85 -40.82 -0.36 1.91 16 LS Contribution 350.89 15.07 5.29 5.29 Total: -1.00 -32.53 350.89 -7.76 -40.30 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -4.76 Total: 9.38 kcal Atomic # 6 Polarization: 6.19 SS G_CDS: -3.49 Total: 2.70 kcal Atomic # 7 Polarization: -47.69 SS G_CDS: -0.04 Total: -47.73 kcal Atomic # 8 Polarization: -24.99 SS G_CDS: 0.26 Total: -24.73 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.79 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.53 -7.76 -40.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293443982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.873 kcal (2) G-P(sol) polarization free energy of solvation -32.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.297 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds