Wall clock time and date at job start Tue Mar 31 2020 16:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 H 1.08998 * 109.47565 * 305.00629 * 3 2 1 5 5 C 1.50695 * 109.47581 * 185.00152 * 3 2 1 6 6 H 1.08004 * 120.00025 * 240.00388 * 5 3 2 7 7 C 1.37880 * 120.00044 * 59.99984 * 5 3 2 8 8 N 1.31511 * 120.00046 * 0.02562 * 7 5 3 9 9 Si 1.86798 * 120.00012 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47239 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.46949 * 120.00034 * 9 7 5 12 12 H 1.48495 * 109.47204 * 240.00102 * 9 7 5 13 13 N 1.46504 * 109.46822 * 64.99847 * 3 2 1 14 14 C 1.34773 * 120.00316 * 275.00099 * 13 3 2 15 15 O 1.21520 * 119.99872 * 0.02562 * 14 13 3 16 16 C 1.48059 * 119.99900 * 179.97438 * 14 13 3 17 17 C 1.39725 * 120.08659 * 0.02562 * 16 14 13 18 18 C 1.37296 * 119.89876 * 180.02562 * 17 16 14 19 19 C 1.40522 * 120.74700 * 359.93270 * 18 17 16 20 20 C 1.39394 * 119.52285 * 359.93010 * 19 18 17 21 21 C 1.38897 * 120.08134 * 179.72526 * 16 14 13 22 22 N 1.38434 * 123.43458 * 180.37395 * 20 19 18 23 23 C 1.32965 * 125.66794 * 319.01986 * 22 20 19 24 24 O 1.21273 * 119.03487 * 182.54918 * 23 22 20 25 25 C 1.50418 * 121.92904 * 2.53463 * 23 22 20 26 26 N 1.46292 * 108.83578 * 63.62517 * 25 23 22 27 27 C 1.33160 * 121.52133 * 297.01535 * 26 25 23 28 28 O 1.21561 * 117.74571 * 179.26031 * 27 26 25 29 29 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 32 32 H 1.08996 * 109.47853 * 120.00331 * 2 1 3 33 33 H 1.09002 * 109.47153 * 240.00359 * 2 1 3 34 34 H 0.96998 * 120.00524 * 180.02562 * 8 7 5 35 35 H 0.97003 * 119.99976 * 95.00125 * 13 3 2 36 36 H 1.07991 * 120.05018 * 0.03800 * 17 16 14 37 37 H 1.07996 * 119.62531 * 179.90401 * 18 17 16 38 38 H 1.07990 * 119.71910 * 0.07218 * 21 16 14 39 39 H 0.97003 * 117.16930 * 139.00554 * 22 20 19 40 40 H 1.08996 * 109.57813 * 303.82610 * 25 23 22 41 41 H 1.08995 * 109.58057 * 183.43055 * 25 23 22 42 42 H 0.97003 * 119.24399 * 117.03122 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9816 -0.8417 5 6 3.5419 1.4443 -0.1239 6 1 4.1472 1.8889 0.6523 7 6 4.1433 0.8785 -1.2280 8 7 3.4062 0.3375 -2.1734 9 14 6.0049 0.8802 -1.3812 10 1 6.5988 1.5443 -0.1931 11 1 6.4961 -0.5189 -1.4628 12 1 6.3999 1.6158 -2.6092 13 7 1.6524 2.0974 1.2518 14 6 0.4351 2.6643 1.3670 15 8 -0.3411 2.6318 0.4326 16 6 0.0433 3.3257 2.6324 17 6 0.9343 3.3637 3.7081 18 6 0.5667 3.9775 4.8799 19 6 -0.6994 4.5726 5.0127 20 6 -1.5899 4.5393 3.9409 21 6 -1.2086 3.9155 2.7511 22 7 -2.8526 5.1055 3.9804 23 6 -3.6929 5.0553 5.0096 24 8 -4.7921 5.5551 4.8970 25 6 -3.3202 4.3964 6.3095 26 7 -2.2023 5.1276 6.9061 27 6 -1.0186 5.2045 6.3011 28 8 -0.1418 5.8413 6.8519 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.8934 -0.5138 0.8899 33 1 1.8933 -0.5138 -0.8900 34 1 3.8292 -0.0609 -2.9500 35 1 2.2719 2.1231 1.9979 36 1 1.9106 2.9110 3.6178 37 1 1.2582 4.0029 5.7090 38 1 -1.8944 3.8883 1.9173 39 1 -3.1501 5.5803 3.1885 40 1 -3.0237 3.3641 6.1239 41 1 -4.1735 4.4172 6.9873 42 1 -2.3262 5.5663 7.7623 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000293443982.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:42 Heat of formation + Delta-G solvation = -97.105526 kcal Electronic energy + Delta-G solvation = -27914.404783 eV Core-core repulsion = 23858.363194 eV Total energy + Delta-G solvation = -4056.041589 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.57047 -41.05065 -40.44759 -39.29223 -36.97360 -36.73125 -35.93954 -34.33387 -33.10391 -32.20694 -31.00499 -29.04936 -28.77901 -26.56026 -25.00469 -23.95473 -23.03032 -21.99305 -21.65234 -21.08299 -19.66346 -19.01623 -18.38091 -18.27982 -17.88388 -17.42737 -17.28550 -16.87981 -16.29703 -16.09693 -15.99303 -15.78201 -15.44592 -15.08939 -14.80310 -14.58873 -14.48202 -14.22785 -13.78011 -13.68830 -13.52179 -13.35301 -13.15408 -12.86302 -12.69252 -12.65103 -12.13441 -12.04797 -11.99907 -11.73555 -11.56031 -11.40072 -11.02225 -10.84755 -10.51873 -10.39760 -10.23984 -9.66627 -9.56761 -8.14486 -6.31161 -0.69178 -0.02557 1.08945 1.26438 1.46032 1.48407 1.58957 1.73411 1.88909 2.13824 2.33256 2.54501 2.68217 3.06103 3.15970 3.23708 3.62632 3.77342 3.90395 3.99507 4.05549 4.21178 4.41896 4.52861 4.60409 4.67378 4.69415 4.79417 4.99853 5.09683 5.14001 5.28196 5.31538 5.42198 5.45728 5.56134 5.57549 5.62373 5.81836 5.88007 5.92924 5.97595 6.18898 6.67268 6.76550 6.88463 6.92204 7.33881 7.50676 8.90938 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.021080 B = 0.002746 C = 0.002522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1327.952674 B =10194.598076 C =11097.517209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.122 4.122 3 C 0.278 3.722 4 H 0.002 0.998 5 C -0.546 4.546 6 H 0.074 0.926 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.967 3.033 10 H -0.259 1.259 11 H -0.280 1.280 12 H -0.287 1.287 13 N -0.693 5.693 14 C 0.538 3.462 15 O -0.576 6.576 16 C -0.082 4.082 17 C -0.094 4.094 18 C -0.042 4.042 19 C -0.135 4.135 20 C 0.182 3.818 21 C -0.092 4.092 22 N -0.654 5.654 23 C 0.506 3.494 24 O -0.554 6.554 25 C 0.095 3.905 26 N -0.693 5.693 27 C 0.564 3.436 28 O -0.566 6.566 29 H 0.045 0.955 30 H 0.045 0.955 31 H 0.026 0.974 32 H 0.044 0.956 33 H 0.071 0.929 34 H 0.264 0.736 35 H 0.405 0.595 36 H 0.159 0.841 37 H 0.161 0.839 38 H 0.144 0.856 39 H 0.416 0.584 40 H 0.124 0.876 41 H 0.162 0.838 42 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.693 5.171 19.551 22.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.161 4.161 3 C 0.175 3.825 4 H 0.020 0.980 5 C -0.584 4.584 6 H 0.092 0.908 7 C -0.183 4.183 8 N -0.553 5.553 9 Si 0.792 3.208 10 H -0.183 1.183 11 H -0.206 1.206 12 H -0.213 1.213 13 N -0.342 5.342 14 C 0.324 3.676 15 O -0.458 6.458 16 C -0.086 4.086 17 C -0.113 4.113 18 C -0.061 4.061 19 C -0.140 4.140 20 C 0.086 3.914 21 C -0.113 4.113 22 N -0.299 5.299 23 C 0.293 3.707 24 O -0.430 6.430 25 C -0.032 4.032 26 N -0.348 5.348 27 C 0.351 3.649 28 O -0.445 6.445 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.045 0.955 32 H 0.063 0.937 33 H 0.090 0.910 34 H 0.073 0.927 35 H 0.242 0.758 36 H 0.177 0.823 37 H 0.179 0.821 38 H 0.161 0.839 39 H 0.255 0.745 40 H 0.142 0.858 41 H 0.180 0.820 42 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -10.319 5.444 18.984 22.282 hybrid contribution 0.884 0.285 -0.728 1.181 sum -9.434 5.730 18.255 21.333 Atomic orbital electron populations 1.21692 0.96955 0.99224 1.00324 1.21794 0.93770 0.99011 1.01509 1.18429 0.93729 0.89269 0.81094 0.97999 1.21609 0.91373 1.38768 1.06689 0.90756 1.25718 1.03013 0.94473 0.95120 1.70042 1.36909 1.38420 1.09882 0.85374 0.79507 0.77729 0.78192 1.18278 1.20624 1.21341 1.46205 1.15065 1.55059 1.17852 1.18662 0.82352 0.78910 0.87627 1.90744 1.52386 1.61105 1.41555 1.19939 0.95473 0.99364 0.93866 1.21443 1.00119 0.98488 0.91248 1.21323 0.93324 0.93113 0.98298 1.19564 0.95651 1.05064 0.93768 1.17037 0.84485 0.95702 0.94205 1.21243 0.96524 0.95970 0.97587 1.42989 1.13838 1.53573 1.19497 1.21370 0.83625 0.79279 0.86386 1.90832 1.22173 1.46787 1.83225 1.22000 0.92396 0.97400 0.91420 1.45319 1.09674 1.54805 1.24969 1.17780 0.82511 0.79700 0.84862 1.90873 1.46051 1.42373 1.65237 0.93591 0.93628 0.95507 0.93739 0.91019 0.92657 0.75847 0.82345 0.82109 0.83873 0.74517 0.85836 0.82010 0.73444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.28 8.51 71.98 0.61 -4.66 16 2 C -0.12 -5.66 5.45 30.59 0.17 -5.49 16 3 C 0.28 13.35 2.24 44.24 0.10 13.45 16 4 H 0.00 0.12 7.58 -2.39 -0.02 0.10 16 5 C -0.55 -27.30 8.73 25.60 0.22 -27.07 16 6 H 0.07 3.45 7.74 -2.91 -0.02 3.43 16 7 C 0.02 0.88 5.29 84.66 0.45 1.33 16 8 N -0.91 -50.54 11.29 21.45 0.24 -50.29 16 9 Si 0.97 40.56 29.54 68.60 2.03 42.59 16 10 H -0.26 -10.22 7.11 99.48 0.71 -9.51 16 11 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16 12 H -0.29 -12.18 7.11 99.48 0.71 -11.48 16 13 N -0.69 -25.89 4.97 -448.79 -2.23 -28.12 16 14 C 0.54 19.25 6.35 86.85 0.55 19.80 16 15 O -0.58 -25.10 13.46 -3.78 -0.05 -25.15 16 16 C -0.08 -2.11 5.86 -20.15 -0.12 -2.23 16 17 C -0.09 -1.83 9.52 22.41 0.21 -1.62 16 18 C -0.04 -0.72 9.41 22.60 0.21 -0.51 16 19 C -0.13 -2.45 5.49 -20.14 -0.11 -2.56 16 20 C 0.18 3.34 6.17 38.72 0.24 3.57 16 21 C -0.09 -2.08 9.35 22.77 0.21 -1.87 16 22 N -0.65 -10.82 4.90 -306.21 -1.50 -12.32 16 23 C 0.51 8.20 7.41 87.85 0.65 8.86 16 24 O -0.55 -12.75 17.80 -3.01 -0.05 -12.81 16 25 C 0.09 0.78 6.48 85.58 0.55 1.34 16 26 N -0.69 -7.81 5.29 -473.72 -2.51 -10.32 16 27 C 0.56 10.35 7.23 86.79 0.63 10.98 16 28 O -0.57 -14.34 17.29 -3.91 -0.07 -14.41 16 29 H 0.05 1.84 5.64 -2.39 -0.01 1.83 16 30 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.03 1.23 7.84 -2.38 -0.02 1.21 16 32 H 0.04 1.92 8.14 -2.39 -0.02 1.90 16 33 H 0.07 3.78 5.95 -2.39 -0.01 3.77 16 34 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 35 H 0.40 12.35 6.57 -92.71 -0.61 11.74 16 36 H 0.16 2.55 6.40 -2.92 -0.02 2.53 16 37 H 0.16 2.31 7.86 -2.91 -0.02 2.29 16 38 H 0.14 3.40 7.61 -2.92 -0.02 3.38 16 39 H 0.42 6.50 8.67 -92.71 -0.80 5.69 16 40 H 0.12 0.65 8.14 -2.39 -0.02 0.63 16 41 H 0.16 0.42 8.11 -2.39 -0.02 0.40 16 42 H 0.43 3.33 8.85 -92.71 -0.82 2.51 16 Total: -1.00 -72.52 350.89 -0.67 -73.19 By element: Atomic # 1 Polarization: 25.43 SS G_CDS: -1.11 Total: 24.32 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 4.58 Total: 13.32 kcal Atomic # 7 Polarization: -95.06 SS G_CDS: -5.99 Total: -101.05 kcal Atomic # 8 Polarization: -52.19 SS G_CDS: -0.17 Total: -52.37 kcal Atomic # 14 Polarization: 40.56 SS G_CDS: 2.03 Total: 42.59 kcal Total: -72.52 -0.67 -73.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000293443982.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.913 kcal (2) G-P(sol) polarization free energy of solvation -72.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.192 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds