Wall clock time and date at job start Tue Mar 31 2020 16:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50691 * 120.00219 * 2 1 4 4 N 1.46506 * 109.47276 * 124.99688 * 3 2 1 5 5 C 1.46495 * 119.99960 * 274.83582 * 4 3 2 6 6 C 1.50699 * 109.46865 * 263.68331 * 5 4 3 7 7 H 1.07996 * 120.00369 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99968 * 179.97438 * 6 5 4 9 9 N 1.31514 * 120.00294 * 0.02562 * 8 6 5 10 10 Si 1.86800 * 120.00114 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47125 * 90.00004 * 10 8 6 12 12 H 1.48499 * 109.47248 * 210.00222 * 10 8 6 13 13 H 1.48500 * 109.47243 * 330.00149 * 10 8 6 14 14 C 1.34774 * 119.99953 * 94.83107 * 4 3 2 15 15 O 1.21359 * 120.00143 * 354.62877 * 14 4 3 16 16 C 1.49355 * 120.00028 * 174.62883 * 14 4 3 17 17 O 1.21379 * 119.99997 * 0.29914 * 16 14 4 18 18 N 1.34773 * 120.00198 * 180.30344 * 16 14 4 19 19 C 1.39756 * 120.00016 * 184.82211 * 18 16 14 20 20 C 1.39048 * 120.00401 * 144.58004 * 19 18 16 21 21 C 1.38190 * 120.21687 * 180.02562 * 20 19 18 22 22 C 1.38034 * 120.23064 * 359.97438 * 21 20 19 23 23 C 1.39588 * 120.00443 * 359.97438 * 22 21 20 24 24 C 1.47864 * 120.10598 * 180.02562 * 23 22 21 25 25 N 1.34778 * 119.99942 * 0.02562 * 24 23 22 26 26 O 1.21545 * 119.99989 * 180.02562 * 24 23 22 27 27 C 1.38650 * 120.00758 * 324.59751 * 19 18 16 28 28 H 1.08005 * 119.99479 * 0.02562 * 1 2 3 29 29 H 1.07998 * 120.00769 * 179.97438 * 1 2 3 30 30 H 1.08005 * 119.99479 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47290 * 4.99411 * 3 2 1 32 32 H 1.09002 * 109.47378 * 244.99525 * 3 2 1 33 33 H 1.08999 * 109.47400 * 23.68304 * 5 4 3 34 34 H 1.08997 * 109.47361 * 143.68515 * 5 4 3 35 35 H 0.96993 * 120.00260 * 179.97438 * 9 8 6 36 36 H 0.97001 * 120.00040 * 4.82692 * 18 16 14 37 37 H 1.08005 * 119.88877 * 0.02562 * 20 19 18 38 38 H 1.08009 * 119.88654 * 179.97438 * 21 20 19 39 39 H 1.08004 * 119.99706 * 180.02562 * 22 21 20 40 40 H 0.97005 * 119.99872 * 0.02562 * 25 24 23 41 41 H 0.96997 * 119.99661 * 179.97438 * 25 24 23 42 42 H 1.08009 * 120.11264 * 359.70467 * 27 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 7 2.9938 1.3318 1.1315 5 6 2.5293 1.7655 2.4515 6 6 2.8593 3.2230 2.6461 7 1 3.3647 3.7713 1.8650 8 6 2.5158 3.8566 3.8216 9 7 1.9007 3.1889 4.7731 10 14 2.9253 5.6630 4.0632 11 1 1.7971 6.4960 3.5748 12 1 3.1500 5.9310 5.5064 13 1 4.1545 5.9983 3.3003 14 6 4.2768 0.9574 0.9581 15 8 4.6383 0.5061 -0.1089 16 6 5.2538 1.0979 2.0790 17 8 4.8910 1.5443 3.1478 18 7 6.5382 0.7292 1.9036 19 6 7.4288 0.7656 2.9801 20 6 8.4236 -0.1994 3.0923 21 6 9.3063 -0.1679 4.1551 22 6 9.2067 0.8218 5.1122 23 6 8.2122 1.7958 5.0082 24 6 8.1038 2.8573 6.0318 25 7 8.9664 2.8858 7.0671 26 8 7.2369 3.7042 5.9397 27 6 7.3203 1.7636 3.9364 28 1 -0.5399 0.9354 -0.0004 29 1 -0.5401 -0.9352 -0.0004 30 1 1.8499 -0.9354 0.0004 31 1 1.3586 2.1316 0.0895 32 1 2.6214 1.4025 -0.9313 33 1 1.4507 1.6246 2.5215 34 1 3.0237 1.1750 3.2227 35 1 1.6594 3.6345 5.6001 36 1 6.8445 0.4387 1.0303 37 1 8.5068 -0.9760 2.3463 38 1 10.0768 -0.9204 4.2373 39 1 9.8988 0.8430 5.9411 40 1 9.6585 2.2101 7.1404 41 1 8.8955 3.5824 7.7383 42 1 6.5511 2.5167 3.8488 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340631016.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:43 Heat of formation + Delta-G solvation = -62.168614 kcal Electronic energy + Delta-G solvation = -28382.114717 eV Core-core repulsion = 24327.588107 eV Total energy + Delta-G solvation = -4054.526610 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -42.13853 -41.06524 -40.01562 -38.82766 -37.52689 -35.89019 -35.05221 -34.73773 -33.83311 -32.04043 -30.80299 -29.47376 -27.95078 -25.65207 -25.30829 -24.63530 -22.99039 -21.67039 -21.25713 -20.52404 -19.48867 -18.81010 -18.49292 -18.21424 -17.68383 -17.08613 -16.97305 -16.87970 -16.66780 -16.23415 -15.95348 -15.84419 -15.63501 -15.08778 -14.87078 -14.75177 -14.49992 -14.28407 -14.09620 -13.70979 -13.57619 -13.09410 -12.91505 -12.84174 -12.82335 -12.51196 -12.41890 -12.29621 -11.95063 -11.73398 -11.51661 -11.21185 -10.79504 -10.68477 -10.47554 -10.13702 -9.93617 -9.70552 -9.25421 -8.19559 -6.25776 -0.22948 0.14825 0.61573 1.12253 1.27783 1.37051 1.41334 1.60116 1.80720 2.21693 2.35822 2.45375 2.67593 2.86543 3.16523 3.38177 3.82933 3.93767 4.02058 4.11867 4.14647 4.20275 4.42387 4.44462 4.50933 4.75771 4.80018 4.88082 5.02137 5.21444 5.23074 5.29521 5.33478 5.38532 5.48597 5.66537 5.71159 5.81216 5.83558 5.92950 6.04654 6.11094 6.27504 6.41233 6.74708 6.80293 7.06806 7.28221 7.40160 8.88742 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.010076 B = 0.004847 C = 0.003476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2778.273489 B = 5775.059380 C = 8052.150743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.183 4.183 3 C 0.137 3.863 4 N -0.561 5.561 5 C 0.254 3.746 6 C -0.514 4.514 7 H 0.043 0.957 8 C 0.028 3.972 9 N -0.917 5.917 10 Si 0.942 3.058 11 H -0.259 1.259 12 H -0.292 1.292 13 H -0.284 1.284 14 C 0.507 3.493 15 O -0.554 6.554 16 C 0.481 3.519 17 O -0.469 6.469 18 N -0.644 5.644 19 C 0.122 3.878 20 C -0.103 4.103 21 C -0.094 4.094 22 C -0.084 4.084 23 C -0.143 4.143 24 C 0.551 3.449 25 N -0.822 5.822 26 O -0.597 6.597 27 C -0.099 4.099 28 H 0.104 0.896 29 H 0.120 0.880 30 H 0.106 0.894 31 H 0.087 0.913 32 H 0.092 0.908 33 H 0.023 0.977 34 H 0.039 0.961 35 H 0.261 0.739 36 H 0.430 0.570 37 H 0.166 0.834 38 H 0.186 0.814 39 H 0.173 0.827 40 H 0.420 0.580 41 H 0.412 0.588 42 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.488 -10.716 -1.836 19.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.202 4.202 3 C 0.016 3.984 4 N -0.290 5.290 5 C 0.133 3.867 6 C -0.553 4.553 7 H 0.061 0.939 8 C -0.172 4.172 9 N -0.557 5.557 10 Si 0.769 3.231 11 H -0.184 1.184 12 H -0.218 1.218 13 H -0.210 1.210 14 C 0.290 3.710 15 O -0.436 6.436 16 C 0.262 3.738 17 O -0.339 6.339 18 N -0.294 5.294 19 C 0.028 3.972 20 C -0.124 4.124 21 C -0.112 4.112 22 C -0.103 4.103 23 C -0.147 4.147 24 C 0.338 3.662 25 N -0.387 5.387 26 O -0.478 6.478 27 C -0.120 4.120 28 H 0.122 0.878 29 H 0.139 0.861 30 H 0.124 0.876 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.041 0.959 34 H 0.057 0.943 35 H 0.070 0.930 36 H 0.269 0.731 37 H 0.184 0.816 38 H 0.203 0.797 39 H 0.191 0.809 40 H 0.254 0.746 41 H 0.244 0.756 42 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 15.634 -10.132 -1.654 18.703 hybrid contribution -0.018 1.376 0.347 1.420 sum 15.616 -8.756 -1.307 17.951 Atomic orbital electron populations 1.24070 0.95046 1.03231 0.97607 1.23135 0.96763 0.97777 1.02521 1.20786 0.91953 0.96836 0.88863 1.48218 1.08044 1.59818 1.12944 1.19369 0.94565 0.94656 0.78075 1.21320 1.37548 0.95412 1.00999 0.93894 1.25398 0.94995 1.01314 0.95494 1.69981 1.41654 1.37463 1.06651 0.85808 0.78412 0.81972 0.76925 1.18353 1.21793 1.20991 1.19853 0.83844 0.79735 0.87602 1.90629 1.78858 1.46761 1.27314 1.20560 0.84069 0.79944 0.89191 1.91046 1.77392 1.38220 1.27285 1.43007 1.07297 1.65884 1.13250 1.17876 0.93332 0.95995 0.90021 1.21578 0.94152 0.96039 1.00582 1.21451 0.99050 0.98694 0.92015 1.21705 0.95731 0.92523 1.00368 1.19790 0.99768 0.98817 0.96279 1.18704 0.80683 0.84218 0.82634 1.43428 1.34443 1.34743 1.26130 1.90889 1.37237 1.41988 1.77670 1.21302 0.98184 0.97487 0.95064 0.87812 0.86143 0.87596 0.89439 0.88979 0.95863 0.94336 0.92955 0.73053 0.81634 0.79713 0.80942 0.74594 0.75639 0.88339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.30 14.32 67.78 0.97 -3.33 16 2 C -0.18 -5.77 9.84 25.64 0.25 -5.52 16 3 C 0.14 5.01 5.83 85.63 0.50 5.51 16 4 N -0.56 -25.04 2.46 -832.22 -2.05 -27.09 16 5 C 0.25 13.56 4.78 85.63 0.41 13.97 16 6 C -0.51 -30.24 7.79 25.60 0.20 -30.04 16 7 H 0.04 2.56 7.81 -2.91 -0.02 2.53 16 8 C 0.03 1.68 5.46 84.66 0.46 2.14 16 9 N -0.92 -57.74 13.29 21.45 0.28 -57.45 16 10 Si 0.94 49.77 29.54 68.60 2.03 51.80 16 11 H -0.26 -12.52 7.11 99.48 0.71 -11.82 16 12 H -0.29 -15.66 7.11 99.48 0.71 -14.96 16 13 H -0.28 -15.33 7.11 99.48 0.71 -14.63 16 14 C 0.51 21.87 7.67 87.24 0.67 22.53 16 15 O -0.55 -22.60 16.04 -3.27 -0.05 -22.65 16 16 C 0.48 20.94 7.57 87.24 0.66 21.60 16 17 O -0.47 -24.86 9.57 -3.34 -0.03 -24.89 16 18 N -0.64 -21.44 5.32 -304.93 -1.62 -23.06 16 19 C 0.12 3.76 6.29 38.17 0.24 4.00 16 20 C -0.10 -1.97 9.96 22.45 0.22 -1.75 16 21 C -0.09 -1.27 10.02 22.21 0.22 -1.05 16 22 C -0.08 -1.41 9.54 22.55 0.22 -1.20 16 23 C -0.14 -4.29 5.87 -20.10 -0.12 -4.41 16 24 C 0.55 18.26 8.05 86.79 0.70 18.96 16 25 N -0.82 -15.38 8.82 -175.59 -1.55 -16.93 16 26 O -0.60 -28.42 17.18 -3.86 -0.07 -28.49 16 27 C -0.10 -3.81 8.23 22.67 0.19 -3.62 16 28 H 0.10 2.66 7.84 -2.91 -0.02 2.64 16 29 H 0.12 2.60 8.06 -2.91 -0.02 2.57 16 30 H 0.11 3.32 8.06 -2.91 -0.02 3.30 16 31 H 0.09 3.16 7.76 -2.39 -0.02 3.14 16 32 H 0.09 3.20 7.36 -2.39 -0.02 3.18 16 33 H 0.02 1.28 8.02 -2.39 -0.02 1.26 16 34 H 0.04 2.30 5.84 -2.39 -0.01 2.28 16 35 H 0.26 15.78 8.31 -92.71 -0.77 15.01 16 36 H 0.43 11.49 8.30 -92.71 -0.77 10.72 16 37 H 0.17 2.02 8.06 -2.91 -0.02 1.99 16 38 H 0.19 0.70 8.06 -2.91 -0.02 0.68 16 39 H 0.17 1.13 6.40 -2.91 -0.02 1.12 16 40 H 0.42 3.75 6.86 -92.70 -0.64 3.11 16 41 H 0.41 6.89 8.93 -92.71 -0.83 6.06 16 42 H 0.10 5.05 5.84 -2.91 -0.02 5.03 16 Total: -1.00 -89.34 366.25 1.61 -87.73 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: -1.13 Total: 23.23 kcal Atomic # 6 Polarization: 32.01 SS G_CDS: 5.79 Total: 37.80 kcal Atomic # 7 Polarization: -119.60 SS G_CDS: -4.93 Total: -124.53 kcal Atomic # 8 Polarization: -75.88 SS G_CDS: -0.15 Total: -76.03 kcal Atomic # 14 Polarization: 49.77 SS G_CDS: 2.03 Total: 51.80 kcal Total: -89.34 1.61 -87.73 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340631016.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.564 kcal (2) G-P(sol) polarization free energy of solvation -89.340 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds