Wall clock time and date at job start Tue Mar 31 2020 16:08:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 119.99664 * 2 1 4 4 C 1.50705 * 109.46981 * 90.00296 * 3 2 1 5 5 H 1.07992 * 119.99902 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99439 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00591 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99714 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47171 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.47113 * 300.00065 * 8 6 4 11 11 H 1.48500 * 109.47260 * 59.99688 * 8 6 4 12 12 C 1.34772 * 120.00109 * 180.02562 * 2 1 3 13 13 O 1.21556 * 119.99744 * 186.99044 * 12 2 1 14 14 C 1.47841 * 120.00033 * 6.98905 * 12 2 1 15 15 C 1.39574 * 120.14223 * 20.28910 * 14 12 2 16 16 C 1.37968 * 119.85180 * 179.79023 * 15 14 12 17 17 C 1.38354 * 120.14158 * 0.49095 * 16 15 14 18 18 C 1.50703 * 119.85285 * 179.71998 * 17 16 15 19 19 C 1.53003 * 110.53275 * 92.85005 * 18 17 16 20 20 N 1.47312 * 110.59871 * 215.84463 * 18 17 16 21 21 C 1.34524 * 106.61376 * 118.52898 * 20 18 17 22 22 O 1.21541 * 123.76868 * 180.02562 * 21 20 18 23 23 N 1.33794 * 112.46129 * 359.97438 * 21 20 18 24 24 C 1.34759 * 111.64384 * 0.02562 * 23 21 20 25 25 O 1.21235 * 127.15962 * 180.02562 * 24 23 21 26 26 C 1.38359 * 120.29355 * 359.73925 * 17 16 15 27 27 C 1.37955 * 120.14623 * 0.02853 * 26 17 16 28 28 H 1.09002 * 109.47284 * 85.96275 * 1 2 3 29 29 H 1.08993 * 109.47182 * 205.96577 * 1 2 3 30 30 H 1.09004 * 109.47455 * 325.96673 * 1 2 3 31 31 H 1.09000 * 109.47579 * 330.00115 * 3 2 1 32 32 H 1.08997 * 109.46691 * 210.00151 * 3 2 1 33 33 H 0.97000 * 119.99968 * 0.02562 * 7 6 4 34 34 H 1.07993 * 120.07830 * 0.02562 * 15 14 12 35 35 H 1.07993 * 119.92824 * 180.23322 * 16 15 14 36 36 H 1.09002 * 109.46888 * 60.00443 * 19 18 17 37 37 H 1.09003 * 109.47113 * 179.97438 * 19 18 17 38 38 H 1.08996 * 109.47550 * 300.00167 * 19 18 17 39 39 H 0.96995 * 126.69444 * 298.50590 * 20 18 17 40 40 H 0.97002 * 124.17628 * 180.02562 * 23 21 20 41 41 H 1.08012 * 119.92598 * 179.97438 * 26 17 16 42 42 H 1.08004 * 120.07080 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0975 1.0962 2.2417 6 6 3.1268 2.8776 1.6727 7 7 3.5550 3.6172 0.6731 8 14 3.4376 3.4172 3.4339 9 1 4.1812 4.7026 3.4339 10 1 2.1398 3.5955 4.1333 11 1 4.2393 2.3821 4.1346 12 6 2.1389 -1.1671 -0.0005 13 8 3.3477 -1.1710 0.1276 14 6 1.4079 -2.4427 -0.1569 15 6 0.1287 -2.4536 -0.7151 16 6 -0.5463 -3.6478 -0.8622 17 6 0.0382 -4.8317 -0.4484 18 6 -0.7075 -6.1317 -0.6064 19 6 -0.3445 -6.8007 -1.9337 20 7 -0.4258 -7.0316 0.5253 21 6 -1.6013 -7.2569 1.1394 22 8 -1.7265 -7.9633 2.1205 23 7 -2.6170 -6.6156 0.5502 24 6 -2.2032 -5.9027 -0.5158 25 8 -2.8851 -5.2195 -1.2493 26 6 1.3040 -4.8272 0.1100 27 6 1.9917 -3.6405 0.2584 28 1 -0.3634 0.0724 -1.0251 29 1 -0.3633 -0.9239 0.4499 30 1 -0.3634 0.8517 0.5752 31 1 1.6084 2.0285 -0.5138 32 1 3.1498 1.1385 -0.5139 33 1 3.3933 3.3373 -0.2414 34 1 -0.3303 -1.5297 -1.0346 35 1 -1.5346 -3.6581 -1.2973 36 1 0.7265 -7.0021 -1.9581 37 1 -0.8923 -7.7382 -2.0298 38 1 -0.6087 -6.1389 -2.7584 39 1 0.4386 -7.3918 0.7782 40 1 -3.5376 -6.6586 0.8530 41 1 1.7545 -5.7549 0.4314 42 1 2.9796 -3.6384 0.6949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000340827310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:51 Heat of formation + Delta-G solvation = -26.330423 kcal Electronic energy + Delta-G solvation = -27997.540516 eV Core-core repulsion = 23944.567966 eV Total energy + Delta-G solvation = -4052.972550 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.07238 -40.19455 -39.17960 -38.26509 -36.73868 -35.26301 -34.87427 -33.05033 -31.94836 -31.15633 -30.02341 -27.53942 -26.40777 -25.48625 -23.90831 -23.55159 -22.56624 -22.32028 -20.97522 -19.52653 -18.78779 -17.53006 -17.26838 -17.04056 -16.78025 -16.47379 -16.33286 -15.73575 -15.44596 -14.91747 -14.76991 -14.54718 -14.39298 -14.12230 -13.78327 -13.62723 -13.44080 -13.08598 -13.01143 -12.68056 -12.45772 -12.24185 -12.19481 -11.79280 -11.44935 -11.34242 -11.09756 -10.85614 -10.81054 -10.62158 -10.54851 -10.11435 -10.07036 -9.27206 -9.20205 -9.10298 -8.94436 -8.42060 -7.73295 -6.42166 -4.14345 0.67021 1.08674 1.19687 1.92517 2.53705 2.56788 3.08890 3.38078 3.41499 3.45823 3.61597 3.66415 3.81167 3.96090 4.25261 4.51418 4.60519 4.74661 4.79000 4.86068 4.98284 5.05767 5.14839 5.32226 5.33680 5.43481 5.44724 5.54089 5.61455 5.64700 5.84378 6.04957 6.07601 6.12748 6.24486 6.27557 6.42777 6.64159 6.74701 6.86821 7.02789 7.27133 7.65503 7.97804 8.13936 8.38035 8.72058 8.85767 9.54966 10.95380 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.020967 B = 0.002626 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.135725 B =10659.028683 C =10847.964684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.589 5.589 3 C 0.236 3.764 4 C -0.607 4.607 5 H 0.052 0.948 6 C 0.020 3.980 7 N -0.909 5.909 8 Si 1.072 2.928 9 H -0.281 1.281 10 H -0.288 1.288 11 H -0.287 1.287 12 C 0.541 3.459 13 O -0.531 6.531 14 C -0.106 4.106 15 C -0.106 4.106 16 C -0.120 4.120 17 C -0.090 4.090 18 C 0.166 3.834 19 C -0.143 4.143 20 N -0.714 5.714 21 C 0.708 3.292 22 O -0.541 6.541 23 N -0.678 5.678 24 C 0.539 3.461 25 O -0.455 6.455 26 C -0.106 4.106 27 C -0.063 4.063 28 H 0.053 0.947 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.025 0.975 32 H 0.034 0.966 33 H 0.267 0.733 34 H 0.157 0.843 35 H 0.143 0.857 36 H 0.084 0.916 37 H 0.071 0.929 38 H 0.089 0.911 39 H 0.442 0.558 40 H 0.434 0.566 41 H 0.126 0.874 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.490 -22.425 -5.609 26.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 N -0.320 5.320 3 C 0.117 3.883 4 C -0.645 4.645 5 H 0.070 0.930 6 C -0.184 4.184 7 N -0.545 5.545 8 Si 0.899 3.101 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.214 1.214 12 C 0.328 3.672 13 O -0.409 6.409 14 C -0.109 4.109 15 C -0.124 4.124 16 C -0.139 4.139 17 C -0.092 4.092 18 C 0.075 3.925 19 C -0.201 4.201 20 N -0.380 5.380 21 C 0.407 3.593 22 O -0.414 6.414 23 N -0.349 5.349 24 C 0.324 3.676 25 O -0.324 6.324 26 C -0.124 4.124 27 C -0.082 4.082 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.043 0.957 32 H 0.052 0.948 33 H 0.077 0.923 34 H 0.174 0.826 35 H 0.161 0.839 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.107 0.893 39 H 0.287 0.713 40 H 0.277 0.723 41 H 0.144 0.856 42 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -11.530 -21.177 -4.534 24.535 hybrid contribution -0.843 -1.381 -0.591 1.722 sum -12.373 -22.558 -5.125 26.234 Atomic orbital electron populations 1.22273 0.81520 1.03286 1.00330 1.47864 1.06138 1.07327 1.70680 1.19397 0.91867 0.78674 0.98383 1.22228 1.40880 1.09607 0.91820 0.92981 1.25824 0.93222 0.93261 1.06093 1.70813 1.43967 1.39601 1.00085 0.83503 0.76478 0.76315 0.73760 1.20619 1.21422 1.21358 1.18195 0.87264 0.83323 0.78426 1.90765 1.13898 1.86782 1.49433 1.20401 0.95033 0.94769 1.00718 1.22380 0.93553 0.99519 0.96917 1.21304 1.01310 0.91248 0.99998 1.19422 0.95351 0.92228 1.02154 1.20178 0.92043 0.90108 0.90158 1.22029 1.03947 1.01055 0.93106 1.45670 1.09824 1.51422 1.31038 1.15811 0.81254 0.79893 0.82366 1.91079 1.84090 1.40871 1.25392 1.44299 1.13190 1.47103 1.30324 1.20566 0.89802 0.77729 0.79536 1.90815 1.62342 1.35773 1.43456 1.20689 0.93636 0.98243 0.99830 1.21260 0.99962 0.90588 0.96351 0.92870 0.90780 0.90705 0.95748 0.94811 0.92253 0.82616 0.83948 0.89701 0.90955 0.89257 0.71292 0.72313 0.85640 0.84316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.08 8.65 59.85 0.52 1.60 16 2 N -0.59 -12.47 2.86 -184.07 -0.53 -12.99 16 3 C 0.24 6.09 4.44 -5.19 -0.02 6.07 16 4 C -0.61 -17.38 9.39 -34.44 -0.32 -17.71 16 5 H 0.05 1.51 7.81 -52.49 -0.41 1.10 16 6 C 0.02 0.59 5.46 -17.82 -0.10 0.49 16 7 N -0.91 -27.58 13.65 55.43 0.76 -26.83 16 8 Si 1.07 25.59 29.90 -169.99 -5.08 20.51 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.54 11.39 7.51 -12.33 -0.09 11.29 16 13 O -0.53 -13.42 16.19 5.32 0.09 -13.34 16 14 C -0.11 -1.66 5.57 -104.97 -0.58 -2.24 16 15 C -0.11 -1.33 7.61 -39.18 -0.30 -1.63 16 16 C -0.12 -1.27 9.16 -39.64 -0.36 -1.64 16 17 C -0.09 -0.83 4.89 -104.53 -0.51 -1.35 16 18 C 0.17 1.16 1.16 -133.24 -0.15 1.01 16 19 C -0.14 -0.71 8.97 37.16 0.33 -0.38 16 20 N -0.71 -4.63 5.37 -54.02 -0.29 -4.92 16 21 C 0.71 6.20 8.99 -88.02 -0.79 5.41 16 22 O -0.54 -6.64 18.04 5.33 0.10 -6.54 16 23 N -0.68 -4.87 5.70 -15.79 -0.09 -4.96 16 24 C 0.54 4.36 6.95 -10.56 -0.07 4.29 16 25 O -0.46 -4.55 15.86 5.60 0.09 -4.46 16 26 C -0.11 -1.03 9.33 -39.64 -0.37 -1.40 16 27 C -0.06 -0.84 9.59 -39.19 -0.38 -1.22 16 28 H 0.05 0.68 7.02 -51.93 -0.36 0.31 16 29 H 0.07 1.00 5.22 -51.93 -0.27 0.73 16 30 H 0.07 1.22 8.10 -51.93 -0.42 0.79 16 31 H 0.02 0.62 7.94 -51.93 -0.41 0.21 16 32 H 0.03 0.96 7.39 -51.93 -0.38 0.58 16 33 H 0.27 8.02 7.22 -40.82 -0.29 7.72 16 34 H 0.16 1.81 4.04 -52.49 -0.21 1.60 16 35 H 0.14 1.41 5.59 -52.49 -0.29 1.12 16 36 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 38 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.44 2.01 8.17 -40.82 -0.33 1.67 16 40 H 0.43 2.27 8.96 -40.82 -0.37 1.90 16 41 H 0.13 0.83 7.09 -52.48 -0.37 0.46 16 42 H 0.14 1.93 7.79 -52.48 -0.41 1.52 16 LS Contribution 353.36 15.07 5.33 5.33 Total: -1.00 -37.24 353.36 -7.45 -44.70 By element: Atomic # 1 Polarization: 5.53 SS G_CDS: -4.61 Total: 0.93 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -3.21 Total: 2.59 kcal Atomic # 7 Polarization: -49.55 SS G_CDS: -0.15 Total: -49.70 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: 0.27 Total: -24.34 kcal Atomic # 14 Polarization: 25.59 SS G_CDS: -5.08 Total: 20.51 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -37.24 -7.45 -44.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340827310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.365 kcal (2) G-P(sol) polarization free energy of solvation -37.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.330 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds