Wall clock time and date at job start Tue Mar 31 2020 16:08:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46507 * 119.99664 * 2 1 4 4 C 1.50705 * 109.46981 * 90.00296 * 3 2 1 5 5 H 1.07992 * 119.99902 * 359.97438 * 4 3 2 6 6 C 1.37879 * 119.99439 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00591 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99714 * 179.97438 * 6 4 3 9 9 H 1.48496 * 109.47171 * 179.97438 * 8 6 4 10 10 H 1.48499 * 109.47113 * 300.00065 * 8 6 4 11 11 H 1.48500 * 109.47260 * 59.99688 * 8 6 4 12 12 C 1.34772 * 120.00109 * 180.02562 * 2 1 3 13 13 O 1.21556 * 119.99744 * 186.99044 * 12 2 1 14 14 C 1.47841 * 120.00033 * 6.98905 * 12 2 1 15 15 C 1.39574 * 120.14223 * 20.28910 * 14 12 2 16 16 C 1.37968 * 119.85180 * 179.79023 * 15 14 12 17 17 C 1.38354 * 120.14158 * 0.49095 * 16 15 14 18 18 C 1.50703 * 119.85285 * 179.71998 * 17 16 15 19 19 C 1.53003 * 110.53275 * 92.85005 * 18 17 16 20 20 N 1.47312 * 110.59871 * 215.84463 * 18 17 16 21 21 C 1.34524 * 106.61376 * 118.52898 * 20 18 17 22 22 O 1.21541 * 123.76868 * 180.02562 * 21 20 18 23 23 N 1.33794 * 112.46129 * 359.97438 * 21 20 18 24 24 C 1.34759 * 111.64384 * 0.02562 * 23 21 20 25 25 O 1.21235 * 127.15962 * 180.02562 * 24 23 21 26 26 C 1.38359 * 120.29355 * 359.73925 * 17 16 15 27 27 C 1.37955 * 120.14623 * 0.02853 * 26 17 16 28 28 H 1.09002 * 109.47284 * 85.96275 * 1 2 3 29 29 H 1.08993 * 109.47182 * 205.96577 * 1 2 3 30 30 H 1.09004 * 109.47455 * 325.96673 * 1 2 3 31 31 H 1.09000 * 109.47579 * 330.00115 * 3 2 1 32 32 H 1.08997 * 109.46691 * 210.00151 * 3 2 1 33 33 H 0.97000 * 119.99968 * 0.02562 * 7 6 4 34 34 H 1.07993 * 120.07830 * 0.02562 * 15 14 12 35 35 H 1.07993 * 119.92824 * 180.23322 * 16 15 14 36 36 H 1.09002 * 109.46888 * 60.00443 * 19 18 17 37 37 H 1.09003 * 109.47113 * 179.97438 * 19 18 17 38 38 H 1.08996 * 109.47550 * 300.00167 * 19 18 17 39 39 H 0.96995 * 126.69444 * 298.50590 * 20 18 17 40 40 H 0.97002 * 124.17628 * 180.02562 * 23 21 20 41 41 H 1.08012 * 119.92598 * 179.97438 * 26 17 16 42 42 H 1.08004 * 120.07080 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2688 0.0000 4 6 2.4486 1.7038 1.4209 5 1 2.0975 1.0962 2.2417 6 6 3.1268 2.8776 1.6727 7 7 3.5550 3.6172 0.6731 8 14 3.4376 3.4172 3.4339 9 1 4.1812 4.7026 3.4339 10 1 2.1398 3.5955 4.1333 11 1 4.2393 2.3821 4.1346 12 6 2.1389 -1.1671 -0.0005 13 8 3.3477 -1.1710 0.1276 14 6 1.4079 -2.4427 -0.1569 15 6 0.1287 -2.4536 -0.7151 16 6 -0.5463 -3.6478 -0.8622 17 6 0.0382 -4.8317 -0.4484 18 6 -0.7075 -6.1317 -0.6064 19 6 -0.3445 -6.8007 -1.9337 20 7 -0.4258 -7.0316 0.5253 21 6 -1.6013 -7.2569 1.1394 22 8 -1.7265 -7.9633 2.1205 23 7 -2.6170 -6.6156 0.5502 24 6 -2.2032 -5.9027 -0.5158 25 8 -2.8851 -5.2195 -1.2493 26 6 1.3040 -4.8272 0.1100 27 6 1.9917 -3.6405 0.2584 28 1 -0.3634 0.0724 -1.0251 29 1 -0.3633 -0.9239 0.4499 30 1 -0.3634 0.8517 0.5752 31 1 1.6084 2.0285 -0.5138 32 1 3.1498 1.1385 -0.5139 33 1 3.3933 3.3373 -0.2414 34 1 -0.3303 -1.5297 -1.0346 35 1 -1.5346 -3.6581 -1.2973 36 1 0.7265 -7.0021 -1.9581 37 1 -0.8923 -7.7382 -2.0298 38 1 -0.6087 -6.1389 -2.7584 39 1 0.4386 -7.3918 0.7782 40 1 -3.5376 -6.6586 0.8530 41 1 1.7545 -5.7549 0.4314 42 1 2.9796 -3.6384 0.6949 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000340827310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:50 Heat of formation + Delta-G solvation = -55.334268 kcal Electronic energy + Delta-G solvation = -27998.798217 eV Core-core repulsion = 23944.567966 eV Total energy + Delta-G solvation = -4054.230251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.72943 -41.47359 -40.01361 -39.39545 -37.53983 -37.00376 -35.65467 -35.01473 -32.78731 -32.22094 -30.84969 -29.23246 -27.83499 -26.32784 -25.47195 -24.29603 -24.02284 -23.15532 -21.77430 -20.95259 -19.48699 -19.16277 -18.35046 -18.24184 -17.72297 -17.47144 -17.15763 -16.74873 -16.45456 -16.38432 -15.82339 -15.64548 -15.53452 -15.32392 -15.21870 -14.78901 -14.47384 -14.29571 -13.87011 -13.73423 -13.60259 -13.56107 -13.46780 -13.19820 -12.97588 -12.69696 -12.50628 -12.18747 -11.97023 -11.89383 -11.53596 -11.32032 -11.24304 -10.92083 -10.68108 -10.64533 -10.07202 -9.97600 -9.55306 -8.72756 -6.48559 -0.35052 0.26489 0.41934 1.33771 1.47836 1.56704 1.68851 1.76657 1.87853 2.03176 2.14736 2.51515 2.68378 2.75924 3.06576 3.11236 3.51081 3.71401 3.76074 3.89961 4.12098 4.15868 4.30111 4.36818 4.43901 4.56410 4.63412 4.70434 4.72411 4.78677 4.84721 4.92889 4.98919 5.14192 5.16600 5.21773 5.30010 5.45144 5.69357 5.74669 5.77138 5.79381 6.09059 6.27393 6.41570 6.52441 7.04260 7.16310 7.31943 8.62776 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.020967 B = 0.002626 C = 0.002581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1335.135725 B =10659.028683 C =10847.964684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.065 3.935 2 N -0.598 5.598 3 C 0.246 3.754 4 C -0.619 4.619 5 H 0.042 0.958 6 C -0.030 4.030 7 N -0.929 5.929 8 Si 1.118 2.882 9 H -0.277 1.277 10 H -0.262 1.262 11 H -0.281 1.281 12 C 0.533 3.467 13 O -0.591 6.591 14 C -0.133 4.133 15 C -0.101 4.101 16 C -0.115 4.115 17 C -0.073 4.073 18 C 0.172 3.828 19 C -0.143 4.143 20 N -0.699 5.699 21 C 0.709 3.291 22 O -0.577 6.577 23 N -0.670 5.670 24 C 0.540 3.460 25 O -0.472 6.472 26 C -0.091 4.091 27 C -0.073 4.073 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.066 0.934 31 H 0.027 0.973 32 H -0.005 1.005 33 H 0.256 0.744 34 H 0.165 0.835 35 H 0.156 0.844 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.089 0.911 39 H 0.452 0.548 40 H 0.442 0.558 41 H 0.163 0.837 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.436 -24.757 -5.459 29.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 N -0.328 5.328 3 C 0.125 3.875 4 C -0.658 4.658 5 H 0.061 0.939 6 C -0.228 4.228 7 N -0.566 5.566 8 Si 0.939 3.061 9 H -0.202 1.202 10 H -0.187 1.187 11 H -0.207 1.207 12 C 0.323 3.677 13 O -0.474 6.474 14 C -0.136 4.136 15 C -0.119 4.119 16 C -0.133 4.133 17 C -0.075 4.075 18 C 0.081 3.919 19 C -0.201 4.201 20 N -0.365 5.365 21 C 0.409 3.591 22 O -0.453 6.453 23 N -0.341 5.341 24 C 0.326 3.674 25 O -0.342 6.342 26 C -0.109 4.109 27 C -0.092 4.092 28 H 0.106 0.894 29 H 0.117 0.883 30 H 0.085 0.915 31 H 0.045 0.955 32 H 0.013 0.987 33 H 0.066 0.934 34 H 0.182 0.818 35 H 0.174 0.826 36 H 0.119 0.881 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.300 0.700 40 H 0.287 0.713 41 H 0.180 0.820 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -13.531 -23.530 -4.414 27.500 hybrid contribution -0.306 -0.782 -0.714 1.102 sum -13.836 -24.312 -5.128 28.440 Atomic orbital electron populations 1.22610 0.78065 1.04268 1.02723 1.47897 1.08310 1.05928 1.70656 1.18944 0.90921 0.81047 0.96620 1.22516 1.40807 1.09613 0.92825 0.93932 1.27352 0.92504 0.93508 1.09433 1.70928 1.45346 1.40319 1.00028 0.82929 0.77689 0.76121 0.69391 1.20200 1.18657 1.20671 1.19100 0.86962 0.84877 0.76776 1.90709 1.16589 1.87824 1.52233 1.20009 0.96437 0.92472 1.04681 1.22371 0.92228 1.00896 0.96362 1.21435 1.01551 0.90792 0.99503 1.19672 0.94983 0.92977 0.99848 1.20186 0.91108 0.89166 0.91436 1.22104 1.05281 1.01406 0.91323 1.45619 1.09833 1.50677 1.30383 1.15873 0.81857 0.79495 0.81919 1.91068 1.84638 1.42516 1.27050 1.44219 1.13558 1.46479 1.29835 1.20648 0.90119 0.77355 0.79293 1.90820 1.62846 1.36541 1.43981 1.20942 0.93368 0.98138 0.98421 1.21285 0.99859 0.91267 0.96811 0.89403 0.88288 0.91510 0.95547 0.98708 0.93437 0.81794 0.82627 0.88086 0.89595 0.89210 0.69974 0.71336 0.81967 0.85748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.96 8.65 127.77 1.11 3.07 16 2 N -0.60 -26.07 2.86 -854.56 -2.44 -28.52 16 3 C 0.25 13.33 4.44 85.63 0.38 13.71 16 4 C -0.62 -36.64 9.39 25.60 0.24 -36.40 16 5 H 0.04 2.54 7.81 -2.91 -0.02 2.52 16 6 C -0.03 -1.75 5.46 84.66 0.46 -1.28 16 7 N -0.93 -58.02 13.65 21.45 0.29 -57.73 16 8 Si 1.12 51.72 29.90 68.60 2.05 53.77 16 9 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 10 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 C 0.53 23.35 7.51 86.79 0.65 24.00 16 13 O -0.59 -31.87 16.19 -3.89 -0.06 -31.93 16 14 C -0.13 -4.13 5.57 -20.09 -0.11 -4.24 16 15 C -0.10 -2.34 7.61 22.53 0.17 -2.17 16 16 C -0.11 -2.06 9.16 22.23 0.20 -1.86 16 17 C -0.07 -1.09 4.89 -19.81 -0.10 -1.19 16 18 C 0.17 1.74 1.16 2.24 0.00 1.74 16 19 C -0.14 -0.82 8.97 71.98 0.65 -0.17 16 20 N -0.70 -6.46 5.37 -443.24 -2.38 -8.84 16 21 C 0.71 10.40 8.99 179.44 1.61 12.02 16 22 O -0.58 -12.99 18.04 -3.84 -0.07 -13.06 16 23 N -0.67 -7.71 5.70 -441.13 -2.52 -10.22 16 24 C 0.54 6.92 6.95 87.94 0.61 7.54 16 25 O -0.47 -7.94 15.86 -2.89 -0.05 -7.99 16 26 C -0.09 -1.49 9.33 22.23 0.21 -1.28 16 27 C -0.07 -1.91 9.59 22.52 0.22 -1.69 16 28 H 0.09 2.07 7.02 -2.39 -0.02 2.05 16 29 H 0.10 2.52 5.22 -2.39 -0.01 2.51 16 30 H 0.07 2.14 8.10 -2.38 -0.02 2.12 16 31 H 0.03 1.41 7.94 -2.39 -0.02 1.39 16 32 H -0.01 -0.31 7.39 -2.39 -0.02 -0.33 16 33 H 0.26 16.09 7.22 -92.71 -0.67 15.42 16 34 H 0.17 3.43 4.04 -2.91 -0.01 3.42 16 35 H 0.16 2.50 5.59 -2.91 -0.02 2.49 16 36 H 0.10 0.31 8.14 -2.39 -0.02 0.29 16 37 H 0.09 0.33 8.14 -2.39 -0.02 0.31 16 38 H 0.09 0.59 8.14 -2.39 -0.02 0.57 16 39 H 0.45 2.25 8.17 -92.71 -0.76 1.50 16 40 H 0.44 3.57 8.96 -92.71 -0.83 2.74 16 41 H 0.16 1.44 7.09 -2.90 -0.02 1.42 16 42 H 0.12 3.57 7.79 -2.91 -0.02 3.54 16 Total: -1.00 -85.58 353.36 0.76 -84.82 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -0.38 Total: 7.91 kcal Atomic # 6 Polarization: 5.48 SS G_CDS: 6.30 Total: 11.79 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -7.04 Total: -105.30 kcal Atomic # 8 Polarization: -52.81 SS G_CDS: -0.18 Total: -52.99 kcal Atomic # 14 Polarization: 51.72 SS G_CDS: 2.05 Total: 53.77 kcal Total: -85.58 0.76 -84.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000340827310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.485 kcal (2) G-P(sol) polarization free energy of solvation -85.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds