Wall clock time and date at job start Tue Mar 31 2020 16:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 110.53666 * 2 1 4 4 N 1.47311 * 110.59868 * 237.00689 * 2 1 3 5 5 C 1.34534 * 106.61844 * 241.25060 * 4 2 1 6 6 O 1.21534 * 123.76907 * 180.20470 * 5 4 2 7 7 N 1.33787 * 112.45585 * 0.37985 * 5 4 2 8 8 C 1.46501 * 124.17625 * 179.86045 * 7 5 4 9 9 C 1.50693 * 109.47240 * 269.69968 * 8 7 5 10 10 O 1.21281 * 120.00369 * 0.02562 * 9 8 7 11 11 N 1.34786 * 120.00039 * 179.97438 * 9 8 7 12 12 C 1.39120 * 119.99860 * 184.37270 * 11 9 8 13 13 C 1.38647 * 120.28887 * 325.34680 * 12 11 9 14 14 C 1.38223 * 120.03661 * 180.26219 * 13 12 11 15 15 C 1.38864 * 120.61570 * 359.73851 * 14 13 12 16 16 C 1.36475 * 120.57506 * 0.02562 * 15 14 13 17 17 C 1.40732 * 119.94463 * 359.97438 * 16 15 14 18 18 C 1.41067 * 120.30097 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00158 * 154.83018 * 18 17 16 20 20 C 1.39960 * 120.00035 * 334.81866 * 18 17 16 21 21 N 1.30850 * 120.00172 * 334.82627 * 20 18 17 22 22 Si 1.86797 * 119.99964 * 154.81633 * 20 18 17 23 23 H 1.48493 * 109.47433 * 180.02562 * 22 20 18 24 24 H 1.48507 * 109.47399 * 300.00688 * 22 20 18 25 25 H 1.48501 * 109.46727 * 60.00450 * 22 20 18 26 26 C 1.34767 * 111.64496 * 359.59974 * 7 5 4 27 27 O 1.21240 * 127.15751 * 180.19498 * 26 7 5 28 28 H 1.09004 * 109.47122 * 297.16932 * 1 2 3 29 29 H 1.09001 * 109.46992 * 57.16609 * 1 2 3 30 30 H 1.08999 * 109.47219 * 177.16750 * 1 2 3 31 31 H 1.08995 * 109.47334 * 182.83080 * 3 2 1 32 32 H 1.09002 * 109.47392 * 302.83599 * 3 2 1 33 33 H 1.09010 * 109.47161 * 62.83003 * 3 2 1 34 34 H 0.96995 * 126.69200 * 61.43577 * 4 2 1 35 35 H 1.09004 * 109.47011 * 149.70132 * 8 7 5 36 36 H 1.08999 * 109.47192 * 29.70590 * 8 7 5 37 37 H 0.96996 * 119.99503 * 4.37567 * 11 9 8 38 38 H 1.08002 * 119.97971 * 359.97438 * 13 12 11 39 39 H 1.07995 * 119.69606 * 179.76870 * 14 13 12 40 40 H 1.07997 * 119.71651 * 180.02562 * 15 14 13 41 41 H 1.08000 * 120.02277 * 180.02562 * 16 15 14 42 42 H 0.97005 * 119.99936 * 354.62807 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 7 2.0482 -0.7509 -1.1566 5 6 2.7640 -1.7762 -0.6602 6 8 3.3369 -2.5966 -1.3500 7 7 2.7716 -1.7939 0.6775 8 6 3.4687 -2.7993 1.4833 9 6 2.5394 -3.9525 1.7617 10 8 1.4065 -3.9365 1.3292 11 7 2.9677 -5.0023 2.4905 12 6 2.1415 -6.1070 2.6711 13 6 0.7693 -5.9432 2.7827 14 6 -0.0461 -7.0438 2.9674 15 6 0.4948 -8.3209 3.0378 16 6 1.8415 -8.5115 2.9263 17 6 2.6940 -7.4077 2.7377 18 6 4.0872 -7.5960 2.6220 19 1 4.6880 -6.8712 2.0927 20 6 4.6911 -8.7220 3.1933 21 7 4.1262 -9.3226 4.2094 22 14 6.3032 -9.3676 2.5051 23 1 6.7299 -10.5603 3.2800 24 1 6.1180 -9.7437 1.0804 25 1 7.3429 -8.3123 2.6074 26 6 2.0633 -0.7693 1.1922 27 8 1.8886 -0.5160 2.3649 28 1 -0.3633 0.4693 0.9143 29 1 -0.3633 0.5572 -0.8635 30 1 -0.3633 -1.0264 -0.0508 31 1 3.1553 1.4130 -0.0507 32 1 1.6723 1.9685 -0.8635 33 1 1.7547 1.9377 0.9143 34 1 1.9040 -0.5446 -2.0933 35 1 3.7865 -2.3531 2.4257 36 1 4.3419 -3.1594 0.9392 37 1 3.8519 -4.9875 2.8891 38 1 0.3378 -4.9545 2.7298 39 1 -1.1139 -6.9095 3.0573 40 1 -0.1559 -9.1707 3.1820 41 1 2.2526 -9.5086 2.9819 42 1 3.3315 -8.9434 4.6163 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344406092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:26 Heat of formation + Delta-G solvation = -57.464328 kcal Electronic energy + Delta-G solvation = -28492.625433 eV Core-core repulsion = 24438.302816 eV Total energy + Delta-G solvation = -4054.322617 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.69029 -39.62111 -38.71460 -37.51502 -36.68803 -35.26175 -33.99411 -33.83717 -31.74045 -29.71113 -29.32920 -27.91355 -27.78265 -25.11141 -24.36207 -22.67317 -21.58320 -21.02916 -20.50105 -19.57996 -18.19671 -18.00463 -17.42600 -16.72861 -16.24718 -16.00149 -15.87365 -15.42220 -14.91812 -14.73598 -14.62128 -14.26157 -14.18705 -13.98907 -13.56033 -13.28734 -13.01935 -12.77450 -12.65655 -12.61902 -12.34927 -12.18471 -11.99818 -11.95503 -11.45165 -11.04219 -10.92630 -10.72949 -10.48533 -10.44308 -10.27753 -10.16832 -9.73463 -9.71156 -9.35054 -9.06097 -8.88063 -7.63789 -7.41103 -6.99796 -4.49999 1.50824 1.96081 2.49855 2.78336 2.85512 2.93372 3.12218 3.20008 3.25768 3.33154 3.64619 3.84891 3.96267 4.19419 4.40484 4.52762 4.81835 5.02934 5.06990 5.11565 5.13416 5.21059 5.27861 5.37136 5.45599 5.53661 5.57566 5.75859 6.19036 6.30575 6.46072 6.60201 6.78590 6.90323 6.92657 7.11327 7.22586 7.36333 7.48088 7.68896 7.74065 7.89025 7.98483 8.01750 8.19383 8.27915 8.62692 8.73667 8.88100 9.98201 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.016731 B = 0.003341 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.159770 B = 8378.252570 C = 9312.906353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.120 3.880 3 C -0.146 4.146 4 N -0.721 5.721 5 C 0.709 3.291 6 O -0.536 6.536 7 N -0.557 5.557 8 C 0.099 3.901 9 C 0.486 3.514 10 O -0.531 6.531 11 N -0.629 5.629 12 C 0.004 3.996 13 C -0.070 4.070 14 C -0.242 4.242 15 C -0.090 4.090 16 C -0.208 4.208 17 C 0.093 3.907 18 C -0.525 4.525 19 H 0.075 0.925 20 C 0.041 3.959 21 N -0.793 5.793 22 Si 1.064 2.936 23 H -0.274 1.274 24 H -0.274 1.274 25 H -0.276 1.276 26 C 0.535 3.465 27 O -0.463 6.463 28 H 0.083 0.917 29 H 0.078 0.922 30 H 0.073 0.927 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.084 0.916 34 H 0.438 0.562 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.404 0.596 38 H 0.109 0.891 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.109 0.891 42 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.404 18.581 -6.321 19.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.030 3.970 3 C -0.204 4.204 4 N -0.386 5.386 5 C 0.410 3.590 6 O -0.409 6.409 7 N -0.303 5.303 8 C -0.026 4.026 9 C 0.271 3.729 10 O -0.409 6.409 11 N -0.271 5.271 12 C -0.090 4.090 13 C -0.090 4.090 14 C -0.261 4.261 15 C -0.109 4.109 16 C -0.228 4.228 17 C 0.089 3.911 18 C -0.553 4.553 19 H 0.093 0.907 20 C -0.181 4.181 21 N -0.416 5.416 22 Si 0.887 3.113 23 H -0.198 1.198 24 H -0.200 1.200 25 H -0.201 1.201 26 C 0.322 3.678 27 O -0.331 6.331 28 H 0.102 0.898 29 H 0.097 0.903 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.098 0.902 33 H 0.103 0.897 34 H 0.283 0.717 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.240 0.760 38 H 0.127 0.873 39 H 0.110 0.890 40 H 0.109 0.891 41 H 0.127 0.873 42 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.181 16.991 -6.073 18.045 hybrid contribution -0.863 1.160 -0.427 1.508 sum -0.682 18.151 -6.500 19.292 Atomic orbital electron populations 1.22013 0.90033 1.04442 1.04141 1.21439 0.97436 0.93947 0.84188 1.22008 1.02016 0.91947 1.04426 1.45598 1.54848 1.29258 1.08937 1.15760 0.79752 0.82020 0.81512 1.91037 1.48228 1.40834 1.60764 1.45801 1.49438 1.27204 1.07808 1.21488 0.95437 0.88056 0.97614 1.20584 0.88807 0.84302 0.79242 1.90660 1.19335 1.79195 1.51691 1.42681 1.19187 1.15768 1.49492 1.17563 0.89685 0.85456 1.16256 1.20673 0.92182 0.98113 0.98028 1.20248 0.97488 0.92781 1.15627 1.20405 0.95060 0.95765 0.99671 1.20758 0.92717 0.97886 1.11461 1.17473 0.93721 0.89052 0.90853 1.20347 0.92821 1.09181 1.32936 0.90666 1.26982 1.04600 0.93128 0.93429 1.70470 1.19007 1.38070 1.14091 0.83646 0.73473 0.77201 0.76942 1.19848 1.19986 1.20096 1.20764 0.76811 0.80291 0.89980 1.90794 1.56129 1.69569 1.16622 0.89818 0.90313 0.90769 0.91355 0.90220 0.89718 0.71749 0.85968 0.85518 0.76049 0.87313 0.89025 0.89139 0.87299 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.98 37.16 0.33 -0.86 16 2 C 0.12 1.10 1.37 -132.10 -0.18 0.92 16 3 C -0.15 -0.86 8.99 37.16 0.33 -0.53 16 4 N -0.72 -7.11 5.91 -52.94 -0.31 -7.42 16 5 C 0.71 10.31 8.62 -88.02 -0.76 9.55 16 6 O -0.54 -9.74 17.48 5.34 0.09 -9.65 16 7 N -0.56 -8.03 2.09 -122.02 -0.26 -8.29 16 8 C 0.10 1.44 6.18 -5.20 -0.03 1.41 16 9 C 0.49 9.49 7.74 -10.98 -0.09 9.40 16 10 O -0.53 -12.18 13.85 5.56 0.08 -12.10 16 11 N -0.63 -12.90 4.90 -9.48 -0.05 -12.95 16 12 C 0.00 0.09 6.33 -83.17 -0.53 -0.43 16 13 C -0.07 -1.71 8.69 -39.44 -0.34 -2.05 16 14 C -0.24 -5.69 10.04 -39.36 -0.39 -6.09 16 15 C -0.09 -2.13 9.97 -39.99 -0.40 -2.53 16 16 C -0.21 -5.32 7.87 -39.28 -0.31 -5.63 16 17 C 0.09 2.41 5.32 -106.65 -0.57 1.84 16 18 C -0.52 -13.14 8.35 -37.86 -0.32 -13.45 16 19 H 0.08 1.79 7.39 -52.49 -0.39 1.41 16 20 C 0.04 1.00 4.95 -17.33 -0.09 0.91 16 21 N -0.79 -20.29 12.32 55.55 0.68 -19.60 16 22 Si 1.06 20.84 30.00 -169.99 -5.10 15.74 16 23 H -0.27 -5.36 7.11 56.52 0.40 -4.96 16 24 H -0.27 -5.33 7.11 56.52 0.40 -4.92 16 25 H -0.28 -5.04 7.11 56.52 0.40 -4.64 16 26 C 0.54 7.08 6.98 -10.56 -0.07 7.01 16 27 O -0.46 -7.09 17.76 5.59 0.10 -6.99 16 28 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.08 0.48 8.14 -51.92 -0.42 0.06 16 34 H 0.44 3.07 8.96 -40.82 -0.37 2.71 16 35 H 0.12 1.42 8.00 -51.93 -0.42 1.00 16 36 H 0.13 1.64 7.85 -51.93 -0.41 1.23 16 37 H 0.40 7.25 7.95 -40.82 -0.32 6.92 16 38 H 0.11 2.66 6.20 -52.49 -0.33 2.33 16 39 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 40 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 41 H 0.11 2.83 6.45 -52.49 -0.34 2.49 16 42 H 0.30 7.90 6.62 -40.82 -0.27 7.63 16 LS Contribution 360.41 15.07 5.43 5.43 Total: -1.00 -33.95 360.41 -7.75 -41.70 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -5.01 Total: 14.67 kcal Atomic # 6 Polarization: 2.86 SS G_CDS: -3.41 Total: -0.54 kcal Atomic # 7 Polarization: -48.33 SS G_CDS: 0.07 Total: -48.26 kcal Atomic # 8 Polarization: -29.00 SS G_CDS: 0.27 Total: -28.73 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.10 Total: 15.74 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -33.95 -7.75 -41.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344406092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.768 kcal (2) G-P(sol) polarization free energy of solvation -33.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.464 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds