Wall clock time and date at job start Tue Mar 31 2020 16:09:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 110.53666 * 2 1 4 4 N 1.47311 * 110.59868 * 237.00689 * 2 1 3 5 5 C 1.34534 * 106.61844 * 241.25060 * 4 2 1 6 6 O 1.21534 * 123.76907 * 180.20470 * 5 4 2 7 7 N 1.33787 * 112.45585 * 0.37985 * 5 4 2 8 8 C 1.46501 * 124.17625 * 179.86045 * 7 5 4 9 9 C 1.50693 * 109.47240 * 269.69968 * 8 7 5 10 10 O 1.21281 * 120.00369 * 0.02562 * 9 8 7 11 11 N 1.34786 * 120.00039 * 179.97438 * 9 8 7 12 12 C 1.39120 * 119.99860 * 184.37270 * 11 9 8 13 13 C 1.38647 * 120.28887 * 325.34680 * 12 11 9 14 14 C 1.38223 * 120.03661 * 180.26219 * 13 12 11 15 15 C 1.38864 * 120.61570 * 359.73851 * 14 13 12 16 16 C 1.36475 * 120.57506 * 0.02562 * 15 14 13 17 17 C 1.40732 * 119.94463 * 359.97438 * 16 15 14 18 18 C 1.41067 * 120.30097 * 179.97438 * 17 16 15 19 19 H 1.08001 * 120.00158 * 154.83018 * 18 17 16 20 20 C 1.39960 * 120.00035 * 334.81866 * 18 17 16 21 21 N 1.30850 * 120.00172 * 334.82627 * 20 18 17 22 22 Si 1.86797 * 119.99964 * 154.81633 * 20 18 17 23 23 H 1.48493 * 109.47433 * 180.02562 * 22 20 18 24 24 H 1.48507 * 109.47399 * 300.00688 * 22 20 18 25 25 H 1.48501 * 109.46727 * 60.00450 * 22 20 18 26 26 C 1.34767 * 111.64496 * 359.59974 * 7 5 4 27 27 O 1.21240 * 127.15751 * 180.19498 * 26 7 5 28 28 H 1.09004 * 109.47122 * 297.16932 * 1 2 3 29 29 H 1.09001 * 109.46992 * 57.16609 * 1 2 3 30 30 H 1.08999 * 109.47219 * 177.16750 * 1 2 3 31 31 H 1.08995 * 109.47334 * 182.83080 * 3 2 1 32 32 H 1.09002 * 109.47392 * 302.83599 * 3 2 1 33 33 H 1.09010 * 109.47161 * 62.83003 * 3 2 1 34 34 H 0.96995 * 126.69200 * 61.43577 * 4 2 1 35 35 H 1.09004 * 109.47011 * 149.70132 * 8 7 5 36 36 H 1.08999 * 109.47192 * 29.70590 * 8 7 5 37 37 H 0.96996 * 119.99503 * 4.37567 * 11 9 8 38 38 H 1.08002 * 119.97971 * 359.97438 * 13 12 11 39 39 H 1.07995 * 119.69606 * 179.76870 * 14 13 12 40 40 H 1.07997 * 119.71651 * 180.02562 * 15 14 13 41 41 H 1.08000 * 120.02277 * 180.02562 * 16 15 14 42 42 H 0.97005 * 119.99936 * 354.62807 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0667 1.4328 0.0000 4 7 2.0482 -0.7509 -1.1566 5 6 2.7640 -1.7762 -0.6602 6 8 3.3369 -2.5966 -1.3500 7 7 2.7716 -1.7939 0.6775 8 6 3.4687 -2.7993 1.4833 9 6 2.5394 -3.9525 1.7617 10 8 1.4065 -3.9365 1.3292 11 7 2.9677 -5.0023 2.4905 12 6 2.1415 -6.1070 2.6711 13 6 0.7693 -5.9432 2.7827 14 6 -0.0461 -7.0438 2.9674 15 6 0.4948 -8.3209 3.0378 16 6 1.8415 -8.5115 2.9263 17 6 2.6940 -7.4077 2.7377 18 6 4.0872 -7.5960 2.6220 19 1 4.6880 -6.8712 2.0927 20 6 4.6911 -8.7220 3.1933 21 7 4.1262 -9.3226 4.2094 22 14 6.3032 -9.3676 2.5051 23 1 6.7299 -10.5603 3.2800 24 1 6.1180 -9.7437 1.0804 25 1 7.3429 -8.3123 2.6074 26 6 2.0633 -0.7693 1.1922 27 8 1.8886 -0.5160 2.3649 28 1 -0.3633 0.4693 0.9143 29 1 -0.3633 0.5572 -0.8635 30 1 -0.3633 -1.0264 -0.0508 31 1 3.1553 1.4130 -0.0507 32 1 1.6723 1.9685 -0.8635 33 1 1.7547 1.9377 0.9143 34 1 1.9040 -0.5446 -2.0933 35 1 3.7865 -2.3531 2.4257 36 1 4.3419 -3.1594 0.9392 37 1 3.8519 -4.9875 2.8891 38 1 0.3378 -4.9545 2.7298 39 1 -1.1139 -6.9095 3.0573 40 1 -0.1559 -9.1707 3.1820 41 1 2.2526 -9.5086 2.9819 42 1 3.3315 -8.9434 4.6163 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344406092.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:09:26 Heat of formation + Delta-G solvation = -80.957902 kcal Electronic energy + Delta-G solvation = -28493.644191 eV Core-core repulsion = 24438.302816 eV Total energy + Delta-G solvation = -4055.341375 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.72151 -41.28388 -39.83801 -39.28041 -37.74012 -36.41265 -35.81067 -35.62041 -32.58186 -31.34198 -31.12686 -29.30136 -28.46356 -26.98451 -25.39019 -24.06842 -23.12666 -22.57318 -21.69284 -21.14843 -19.91347 -19.19534 -18.80769 -18.18748 -17.43173 -17.31959 -16.84198 -16.75700 -16.53804 -16.42555 -15.79101 -15.58379 -15.44193 -15.36594 -15.02812 -14.60793 -14.29855 -14.17571 -13.90012 -13.68889 -13.61855 -13.30444 -13.18713 -13.14574 -12.71075 -12.59885 -12.49466 -12.24337 -12.04142 -11.95997 -11.62683 -11.51391 -11.28702 -11.10393 -10.84690 -10.67911 -10.49616 -9.58886 -9.33138 -8.87523 -6.44636 0.47304 0.68551 0.88172 0.91965 1.53387 1.55287 1.65287 1.76837 1.81562 2.05985 2.32390 2.35330 2.67641 2.78515 3.46576 3.50527 3.60577 3.74820 3.81292 4.03106 4.20108 4.34948 4.36973 4.39606 4.58476 4.63781 4.64049 4.72895 4.82921 4.90201 5.02993 5.07540 5.18018 5.24206 5.44907 5.62210 5.73602 5.75753 5.85913 5.88199 5.97707 6.08773 6.22733 6.30544 6.51457 6.79130 6.87550 6.99526 7.18892 8.03405 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.016731 B = 0.003341 C = 0.003006 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1673.159770 B = 8378.252570 C = 9312.906353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.127 3.873 3 C -0.139 4.139 4 N -0.698 5.698 5 C 0.702 3.298 6 O -0.580 6.580 7 N -0.565 5.565 8 C 0.104 3.896 9 C 0.483 3.517 10 O -0.568 6.568 11 N -0.628 5.628 12 C -0.002 4.002 13 C -0.086 4.086 14 C -0.243 4.243 15 C -0.094 4.094 16 C -0.228 4.228 17 C 0.067 3.933 18 C -0.543 4.543 19 H 0.082 0.918 20 C 0.009 3.991 21 N -0.812 5.812 22 Si 1.114 2.886 23 H -0.274 1.274 24 H -0.272 1.272 25 H -0.251 1.251 26 C 0.525 3.475 27 O -0.488 6.488 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.044 0.956 31 H 0.067 0.933 32 H 0.112 0.888 33 H 0.090 0.910 34 H 0.453 0.547 35 H 0.153 0.847 36 H 0.144 0.856 37 H 0.415 0.585 38 H 0.106 0.894 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.097 0.903 42 H 0.286 0.714 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.068 20.761 -7.377 22.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.037 3.963 3 C -0.197 4.197 4 N -0.364 5.364 5 C 0.402 3.598 6 O -0.456 6.456 7 N -0.310 5.310 8 C -0.021 4.021 9 C 0.270 3.730 10 O -0.448 6.448 11 N -0.272 5.272 12 C -0.096 4.096 13 C -0.106 4.106 14 C -0.262 4.262 15 C -0.112 4.112 16 C -0.248 4.248 17 C 0.063 3.937 18 C -0.570 4.570 19 H 0.100 0.900 20 C -0.209 4.209 21 N -0.435 5.435 22 Si 0.931 3.069 23 H -0.199 1.199 24 H -0.197 1.197 25 H -0.174 1.174 26 C 0.313 3.687 27 O -0.359 6.359 28 H 0.107 0.893 29 H 0.134 0.866 30 H 0.063 0.937 31 H 0.086 0.914 32 H 0.130 0.870 33 H 0.109 0.891 34 H 0.300 0.700 35 H 0.171 0.829 36 H 0.162 0.838 37 H 0.253 0.747 38 H 0.124 0.876 39 H 0.134 0.866 40 H 0.135 0.865 41 H 0.115 0.885 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 0.632 19.244 -7.136 20.534 hybrid contribution -1.144 0.556 -0.088 1.275 sum -0.512 19.801 -7.223 21.083 Atomic orbital electron populations 1.22058 0.88839 1.03253 1.06205 1.21664 0.98061 0.94942 0.81588 1.22055 1.02056 0.89339 1.06261 1.45553 1.53039 1.27741 1.10031 1.15992 0.79935 0.82465 0.81378 1.91002 1.50338 1.42724 1.61562 1.45973 1.49703 1.27305 1.08016 1.21545 0.94381 0.86621 0.99532 1.21468 0.88989 0.84768 0.77804 1.90629 1.21267 1.80047 1.52845 1.42697 1.19315 1.15207 1.49975 1.17758 0.90306 0.86350 1.15180 1.20825 0.92577 0.98362 0.98880 1.20579 0.98765 0.92456 1.14449 1.20666 0.94785 0.96841 0.98943 1.20808 0.93708 0.97428 1.12849 1.17799 0.94521 0.89746 0.91666 1.20556 0.92789 1.10206 1.33494 0.89990 1.28329 1.07017 0.92853 0.92671 1.70576 1.19060 1.38514 1.15332 0.83029 0.70393 0.77307 0.76148 1.19872 1.19676 1.17436 1.21558 0.76123 0.80145 0.90829 1.90774 1.56919 1.70217 1.17948 0.89267 0.86602 0.93716 0.91369 0.86976 0.89114 0.69959 0.82905 0.83816 0.74750 0.87644 0.86578 0.86478 0.88506 0.90142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 8.98 71.98 0.65 -1.36 16 2 C 0.13 2.03 1.37 2.98 0.00 2.03 16 3 C -0.14 -1.15 8.99 71.98 0.65 -0.50 16 4 N -0.70 -12.41 5.91 -439.82 -2.60 -15.01 16 5 C 0.70 19.87 8.62 179.44 1.55 21.42 16 6 O -0.58 -21.04 17.48 -3.82 -0.07 -21.10 16 7 N -0.57 -15.87 2.09 -777.22 -1.63 -17.49 16 8 C 0.10 2.95 6.18 85.63 0.53 3.48 16 9 C 0.48 18.97 7.74 87.65 0.68 19.65 16 10 O -0.57 -26.52 13.85 -3.03 -0.04 -26.56 16 11 N -0.63 -26.07 4.90 -302.28 -1.48 -27.55 16 12 C 0.00 -0.08 6.33 38.88 0.25 0.17 16 13 C -0.09 -4.28 8.69 22.36 0.19 -4.09 16 14 C -0.24 -11.42 10.04 22.42 0.22 -11.19 16 15 C -0.09 -4.45 9.97 22.01 0.22 -4.23 16 16 C -0.23 -11.91 7.87 22.47 0.18 -11.73 16 17 C 0.07 3.53 5.32 -21.18 -0.11 3.42 16 18 C -0.54 -27.50 8.35 23.38 0.20 -27.30 16 19 H 0.08 3.92 7.39 -2.91 -0.02 3.90 16 20 C 0.01 0.43 4.95 85.26 0.42 0.85 16 21 N -0.81 -42.29 12.32 21.83 0.27 -42.02 16 22 Si 1.11 41.40 30.00 68.60 2.06 43.45 16 23 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 24 H -0.27 -9.92 7.11 99.48 0.71 -9.22 16 25 H -0.25 -8.27 7.11 99.48 0.71 -7.56 16 26 C 0.52 13.31 6.98 87.94 0.61 13.92 16 27 O -0.49 -14.58 17.76 -2.91 -0.05 -14.63 16 28 H 0.09 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.12 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 33 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 34 H 0.45 5.21 8.96 -92.71 -0.83 4.38 16 35 H 0.15 3.33 8.00 -2.38 -0.02 3.31 16 36 H 0.14 3.58 7.85 -2.39 -0.02 3.56 16 37 H 0.42 14.96 7.95 -92.71 -0.74 14.22 16 38 H 0.11 5.26 6.20 -2.91 -0.02 5.24 16 39 H 0.12 4.79 8.06 -2.91 -0.02 4.76 16 40 H 0.12 4.81 8.06 -2.91 -0.02 4.79 16 41 H 0.10 5.20 6.45 -2.91 -0.02 5.19 16 42 H 0.29 15.56 6.62 -92.70 -0.61 14.95 16 Total: -1.00 -76.38 360.41 2.37 -74.00 By element: Atomic # 1 Polarization: 42.71 SS G_CDS: -0.32 Total: 42.38 kcal Atomic # 6 Polarization: -1.71 SS G_CDS: 6.23 Total: 4.52 kcal Atomic # 7 Polarization: -96.64 SS G_CDS: -5.44 Total: -102.07 kcal Atomic # 8 Polarization: -62.14 SS G_CDS: -0.16 Total: -62.30 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.06 Total: 43.45 kcal Total: -76.38 2.37 -74.00 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344406092.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.953 kcal (2) G-P(sol) polarization free energy of solvation -76.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds