Wall clock time and date at job start Tue Mar 31 2020 16:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 110.53584 * 2 1 4 4 C 1.38379 * 119.92284 * 269.30095 * 3 2 1 5 5 C 1.38348 * 120.28832 * 180.02562 * 4 3 2 6 6 C 1.37978 * 120.14573 * 359.95353 * 5 4 3 7 7 C 1.39558 * 119.85063 * 0.02562 * 6 5 4 8 8 C 1.47844 * 120.14163 * 179.97438 * 7 6 5 9 9 O 1.21557 * 120.00035 * 179.97438 * 8 7 6 10 10 N 1.34773 * 120.00127 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00192 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47141 * 179.97438 * 11 10 8 13 13 C 1.50706 * 109.46897 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99885 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99756 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00109 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99899 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46728 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47052 * 119.99814 * 17 15 13 20 20 H 1.48497 * 109.47337 * 240.00245 * 17 15 13 21 21 C 1.37929 * 119.92725 * 89.02731 * 3 2 1 22 22 N 1.47317 * 110.59926 * 122.99852 * 2 1 3 23 23 C 1.34528 * 106.61872 * 118.52312 * 22 2 1 24 24 O 1.21540 * 123.76925 * 180.02562 * 23 22 2 25 25 N 1.33792 * 112.45565 * 0.02562 * 23 22 2 26 26 C 1.34766 * 111.64823 * 359.97438 * 25 23 22 27 27 O 1.21227 * 127.15454 * 180.02562 * 26 25 23 28 28 H 1.08996 * 109.47351 * 182.13304 * 1 2 3 29 29 H 1.08999 * 109.46680 * 302.13003 * 1 2 3 30 30 H 1.08998 * 109.47007 * 62.12863 * 1 2 3 31 31 H 1.07996 * 119.85911 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.92299 * 179.97438 * 5 4 3 33 33 H 1.07991 * 120.07497 * 180.02562 * 6 5 4 34 34 H 0.97004 * 120.00446 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.46923 * 299.99755 * 11 10 8 36 36 H 1.08996 * 109.47313 * 59.99412 * 11 10 8 37 37 H 1.08998 * 109.46888 * 299.99621 * 12 11 10 38 38 H 1.08994 * 109.47410 * 60.00210 * 12 11 10 39 39 H 0.96998 * 119.99901 * 180.02562 * 16 15 13 40 40 H 1.07999 * 120.07837 * 359.97438 * 21 3 2 41 41 H 0.96994 * 126.68999 * 298.50476 * 22 2 1 42 42 H 0.97005 * 124.17191 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 6 2.3146 2.0525 -1.1992 5 6 2.8005 3.3478 -1.2081 6 6 3.0322 4.0091 -0.0194 7 6 2.7758 3.3681 1.1935 8 6 3.0224 4.0704 2.4709 9 8 2.7978 3.5098 3.5258 10 7 3.4952 5.3324 2.4657 11 6 3.7390 6.0286 3.7316 12 6 4.2702 7.4347 3.4462 13 6 4.5216 8.1505 4.7484 14 1 4.3227 7.6522 5.6856 15 6 5.0064 9.4412 4.7431 16 7 5.2490 10.0479 3.6018 17 14 5.3173 10.3288 6.3571 18 1 4.9663 9.4343 7.4894 19 1 6.7517 10.7023 6.4483 20 1 4.4817 11.5549 6.4168 21 6 2.2811 2.0627 1.1952 22 7 2.0484 -0.7510 1.1565 23 6 2.7599 -1.7791 0.6601 24 8 3.3284 -2.6028 1.3498 25 7 2.7719 -1.7936 -0.6777 26 6 2.0636 -0.7690 -1.1923 27 8 1.8893 -0.5154 -2.3649 28 1 -0.3634 -1.0269 0.0382 29 1 -0.3632 0.5466 0.8703 30 1 -0.3633 0.4804 -0.9084 31 1 2.1342 1.5397 -2.1324 32 1 2.9985 3.8425 -2.1474 33 1 3.4111 5.0203 -0.0276 34 1 3.6742 5.7800 1.6239 35 1 2.8073 6.0988 4.2929 36 1 4.4739 5.4744 4.3153 37 1 5.2021 7.3641 2.8851 38 1 3.5356 7.9891 2.8624 39 1 5.5905 10.9558 3.5981 40 1 2.0764 1.5629 2.1304 41 1 1.9048 -0.5443 2.0933 42 1 3.2335 -2.4594 -1.2113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345155585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:53 Heat of formation + Delta-G solvation = -60.820607 kcal Electronic energy + Delta-G solvation = -27216.589808 eV Core-core repulsion = 23162.121652 eV Total energy + Delta-G solvation = -4054.468156 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -43.07951 -40.19097 -39.20625 -38.41613 -36.79949 -35.05683 -34.90030 -32.99036 -32.09154 -31.33525 -30.21772 -29.29899 -25.73295 -25.21086 -23.86285 -23.45863 -22.51198 -21.56862 -21.02037 -19.98188 -18.87590 -17.96203 -17.21357 -16.90106 -16.59399 -16.41551 -16.18745 -16.05457 -15.47833 -15.12398 -15.01479 -14.68415 -14.51771 -14.40529 -14.13956 -13.92431 -13.36004 -13.32942 -13.08145 -12.80022 -12.51623 -12.34897 -12.17634 -11.58182 -11.33933 -11.24506 -11.09491 -10.86099 -10.69356 -10.67110 -10.41578 -10.06739 -9.94663 -9.57470 -9.27847 -9.27592 -9.24790 -8.62474 -8.42449 -6.14060 -4.16976 0.59344 0.88281 1.09580 1.92739 2.54763 2.55104 2.88574 3.25580 3.32802 3.34725 3.37827 3.47900 3.68732 3.83708 4.23657 4.37889 4.55606 4.64807 4.73629 4.86950 4.94879 5.01262 5.04589 5.20886 5.23372 5.42856 5.45864 5.53337 5.59874 5.96410 6.01674 6.06938 6.26271 6.26726 6.27996 6.43567 6.49506 6.65215 6.77781 6.84700 7.44945 7.54569 7.67311 7.83425 7.86864 8.21423 8.47734 8.89067 9.48285 10.97589 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024219 B = 0.002160 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.847873 B =12962.054430 C =13594.953533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.168 3.832 3 C -0.112 4.112 4 C -0.090 4.090 5 C -0.119 4.119 6 C -0.075 4.075 7 C -0.123 4.123 8 C 0.547 3.453 9 O -0.545 6.545 10 N -0.714 5.714 11 C 0.121 3.879 12 C 0.012 3.988 13 C -0.522 4.522 14 H 0.060 0.940 15 C 0.059 3.941 16 N -0.894 5.894 17 Si 0.897 3.103 18 H -0.271 1.271 19 H -0.283 1.283 20 H -0.283 1.283 21 C -0.040 4.040 22 N -0.714 5.714 23 C 0.707 3.293 24 O -0.539 6.539 25 N -0.678 5.678 26 C 0.540 3.460 27 O -0.459 6.459 28 H 0.073 0.927 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.143 0.857 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.397 0.603 35 H 0.059 0.941 36 H 0.059 0.941 37 H 0.023 0.977 38 H 0.023 0.977 39 H 0.262 0.738 40 H 0.136 0.864 41 H 0.444 0.556 42 H 0.434 0.566 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.342 -20.639 -14.174 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.077 3.923 3 C -0.114 4.114 4 C -0.108 4.108 5 C -0.137 4.137 6 C -0.094 4.094 7 C -0.126 4.126 8 C 0.333 3.667 9 O -0.425 6.425 10 N -0.363 5.363 11 C -0.001 4.001 12 C -0.026 4.026 13 C -0.560 4.560 14 H 0.079 0.921 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.209 1.209 21 C -0.060 4.060 22 N -0.380 5.380 23 C 0.406 3.594 24 O -0.411 6.411 25 N -0.349 5.349 26 C 0.325 3.675 27 O -0.328 6.328 28 H 0.092 0.908 29 H 0.104 0.896 30 H 0.107 0.893 31 H 0.160 0.840 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.232 0.768 35 H 0.077 0.923 36 H 0.077 0.923 37 H 0.041 0.959 38 H 0.041 0.959 39 H 0.071 0.929 40 H 0.154 0.846 41 H 0.290 0.710 42 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -9.261 -21.090 -13.683 26.791 hybrid contribution 0.548 0.715 0.537 1.048 sum -8.713 -20.375 -13.146 25.766 Atomic orbital electron populations 1.22053 0.88871 1.04014 1.05345 1.20120 0.97377 0.90193 0.84607 1.19213 1.04418 0.93359 0.94385 1.21505 0.96144 0.95214 0.97967 1.21121 0.99673 0.94540 0.98391 1.21562 0.96137 0.99968 0.91704 1.20109 1.03355 0.95331 0.93781 1.18207 0.78089 0.82107 0.88316 1.90750 1.52668 1.66684 1.32376 1.46288 1.64633 1.13835 1.11570 1.21795 1.00301 0.94881 0.83131 1.19340 0.96563 0.88483 0.98188 1.21073 1.43941 0.98652 0.92358 0.92148 1.24999 0.95266 0.97462 0.96569 1.69957 1.44963 1.13240 1.25109 0.86452 0.77900 0.79594 0.83604 1.19564 1.20912 1.20904 1.20860 0.94564 0.93038 0.97488 1.45726 1.54733 1.28197 1.09324 1.15817 0.79595 0.82371 0.81620 1.91085 1.48069 1.41289 1.60694 1.44296 1.51234 1.30528 1.08816 1.20558 0.77014 0.80298 0.89638 1.90802 1.56819 1.68635 1.16513 0.90823 0.89559 0.89331 0.83952 0.84697 0.84784 0.76795 0.92254 0.92279 0.95891 0.95874 0.92853 0.84648 0.70983 0.72328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.96 37.16 0.33 -0.40 16 2 C 0.17 1.18 1.16 -133.24 -0.15 1.03 16 3 C -0.11 -0.99 4.88 -104.68 -0.51 -1.50 16 4 C -0.09 -0.77 9.18 -39.49 -0.36 -1.13 16 5 C -0.12 -1.02 10.03 -39.64 -0.40 -1.42 16 6 C -0.07 -0.76 9.54 -39.18 -0.37 -1.14 16 7 C -0.12 -1.53 5.87 -104.97 -0.62 -2.15 16 8 C 0.55 8.96 7.77 -12.33 -0.10 8.86 16 9 O -0.55 -10.68 16.35 5.32 0.09 -10.60 16 10 N -0.71 -11.94 5.51 -61.25 -0.34 -12.27 16 11 C 0.12 2.48 5.61 -4.04 -0.02 2.46 16 12 C 0.01 0.28 5.09 -27.88 -0.14 0.14 16 13 C -0.52 -14.17 9.11 -34.44 -0.31 -14.49 16 14 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -25.66 13.29 55.43 0.74 -24.92 16 17 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 21 C -0.04 -0.43 8.89 -39.19 -0.35 -0.78 16 22 N -0.71 -5.23 5.34 -54.02 -0.29 -5.52 16 23 C 0.71 6.46 8.99 -88.02 -0.79 5.67 16 24 O -0.54 -6.89 18.04 5.33 0.10 -6.79 16 25 N -0.68 -4.77 5.70 -15.79 -0.09 -4.86 16 26 C 0.54 4.14 6.99 -10.56 -0.07 4.06 16 27 O -0.46 -4.23 15.89 5.60 0.09 -4.14 16 28 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.14 1.15 5.67 -52.49 -0.30 0.85 16 32 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 33 H 0.13 1.19 6.40 -52.49 -0.34 0.86 16 34 H 0.40 5.66 6.51 -40.82 -0.27 5.39 16 35 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 36 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.14 1.41 6.63 -52.49 -0.35 1.06 16 41 H 0.44 2.79 8.15 -40.82 -0.33 2.45 16 42 H 0.43 2.15 8.96 -40.82 -0.37 1.79 16 LS Contribution 361.94 15.07 5.45 5.45 Total: -1.00 -34.35 361.94 -8.11 -42.46 By element: Atomic # 1 Polarization: 9.25 SS G_CDS: -4.87 Total: 4.39 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -3.97 Total: 0.75 kcal Atomic # 7 Polarization: -47.59 SS G_CDS: 0.02 Total: -47.57 kcal Atomic # 8 Polarization: -21.80 SS G_CDS: 0.27 Total: -21.53 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -34.35 -8.11 -42.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345155585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.356 kcal (2) G-P(sol) polarization free energy of solvation -34.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.464 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds