Wall clock time and date at job start Tue Mar 31 2020 16:08:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50699 * 110.53584 * 2 1 4 4 C 1.38379 * 119.92284 * 269.30095 * 3 2 1 5 5 C 1.38348 * 120.28832 * 180.02562 * 4 3 2 6 6 C 1.37978 * 120.14573 * 359.95353 * 5 4 3 7 7 C 1.39558 * 119.85063 * 0.02562 * 6 5 4 8 8 C 1.47844 * 120.14163 * 179.97438 * 7 6 5 9 9 O 1.21557 * 120.00035 * 179.97438 * 8 7 6 10 10 N 1.34773 * 120.00127 * 0.02562 * 8 7 6 11 11 C 1.46503 * 120.00192 * 179.97438 * 10 8 7 12 12 C 1.52999 * 109.47141 * 179.97438 * 11 10 8 13 13 C 1.50706 * 109.46897 * 180.02562 * 12 11 10 14 14 H 1.07994 * 119.99885 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99756 * 179.97438 * 13 12 11 16 16 N 1.31511 * 120.00109 * 0.02562 * 15 13 12 17 17 Si 1.86802 * 119.99899 * 179.97438 * 15 13 12 18 18 H 1.48504 * 109.46728 * 0.02562 * 17 15 13 19 19 H 1.48498 * 109.47052 * 119.99814 * 17 15 13 20 20 H 1.48497 * 109.47337 * 240.00245 * 17 15 13 21 21 C 1.37929 * 119.92725 * 89.02731 * 3 2 1 22 22 N 1.47317 * 110.59926 * 122.99852 * 2 1 3 23 23 C 1.34528 * 106.61872 * 118.52312 * 22 2 1 24 24 O 1.21540 * 123.76925 * 180.02562 * 23 22 2 25 25 N 1.33792 * 112.45565 * 0.02562 * 23 22 2 26 26 C 1.34766 * 111.64823 * 359.97438 * 25 23 22 27 27 O 1.21227 * 127.15454 * 180.02562 * 26 25 23 28 28 H 1.08996 * 109.47351 * 182.13304 * 1 2 3 29 29 H 1.08999 * 109.46680 * 302.13003 * 1 2 3 30 30 H 1.08998 * 109.47007 * 62.12863 * 1 2 3 31 31 H 1.07996 * 119.85911 * 0.02562 * 4 3 2 32 32 H 1.07998 * 119.92299 * 179.97438 * 5 4 3 33 33 H 1.07991 * 120.07497 * 180.02562 * 6 5 4 34 34 H 0.97004 * 120.00446 * 359.97438 * 10 8 7 35 35 H 1.09001 * 109.46923 * 299.99755 * 11 10 8 36 36 H 1.08996 * 109.47313 * 59.99412 * 11 10 8 37 37 H 1.08998 * 109.46888 * 299.99621 * 12 11 10 38 38 H 1.08994 * 109.47410 * 60.00210 * 12 11 10 39 39 H 0.96998 * 119.99901 * 180.02562 * 16 15 13 40 40 H 1.07999 * 120.07837 * 359.97438 * 21 3 2 41 41 H 0.96994 * 126.68999 * 298.50476 * 22 2 1 42 42 H 0.97005 * 124.17191 * 179.97438 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0587 1.4112 0.0000 4 6 2.3146 2.0525 -1.1992 5 6 2.8005 3.3478 -1.2081 6 6 3.0322 4.0091 -0.0194 7 6 2.7758 3.3681 1.1935 8 6 3.0224 4.0704 2.4709 9 8 2.7978 3.5098 3.5258 10 7 3.4952 5.3324 2.4657 11 6 3.7390 6.0286 3.7316 12 6 4.2702 7.4347 3.4462 13 6 4.5216 8.1505 4.7484 14 1 4.3227 7.6522 5.6856 15 6 5.0064 9.4412 4.7431 16 7 5.2490 10.0479 3.6018 17 14 5.3173 10.3288 6.3571 18 1 4.9663 9.4343 7.4894 19 1 6.7517 10.7023 6.4483 20 1 4.4817 11.5549 6.4168 21 6 2.2811 2.0627 1.1952 22 7 2.0484 -0.7510 1.1565 23 6 2.7599 -1.7791 0.6601 24 8 3.3284 -2.6028 1.3498 25 7 2.7719 -1.7936 -0.6777 26 6 2.0636 -0.7690 -1.1923 27 8 1.8893 -0.5154 -2.3649 28 1 -0.3634 -1.0269 0.0382 29 1 -0.3632 0.5466 0.8703 30 1 -0.3633 0.4804 -0.9084 31 1 2.1342 1.5397 -2.1324 32 1 2.9985 3.8425 -2.1474 33 1 3.4111 5.0203 -0.0276 34 1 3.6742 5.7800 1.6239 35 1 2.8073 6.0988 4.2929 36 1 4.4739 5.4744 4.3153 37 1 5.2021 7.3641 2.8851 38 1 3.5356 7.9891 2.8624 39 1 5.5905 10.9558 3.5981 40 1 2.0764 1.5629 2.1304 41 1 1.9048 -0.5443 2.0933 42 1 3.2335 -2.4594 -1.2113 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345155585.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:08:53 Heat of formation + Delta-G solvation = -86.891336 kcal Electronic energy + Delta-G solvation = -27217.720320 eV Core-core repulsion = 23162.121652 eV Total energy + Delta-G solvation = -4055.598668 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.74421 -41.25418 -40.02646 -39.39000 -37.56535 -36.66495 -35.61811 -34.85552 -32.99047 -32.17098 -31.46722 -30.38664 -27.06258 -26.18503 -25.01064 -24.16431 -23.44167 -22.70347 -22.34600 -21.07361 -19.62381 -18.87156 -18.52455 -17.86384 -17.68765 -17.20099 -17.16948 -16.91441 -16.52022 -16.51841 -16.43387 -15.86772 -15.55500 -15.24602 -15.04967 -14.85625 -14.70059 -14.42453 -14.27398 -13.58978 -13.49498 -13.29998 -13.15046 -12.96659 -12.91118 -12.53965 -12.31967 -12.26679 -12.11004 -11.69781 -11.56091 -11.48822 -11.38149 -10.97649 -10.71928 -10.61706 -10.23408 -10.01486 -9.91279 -8.24891 -6.34889 -0.27137 0.13817 0.41669 1.30687 1.40790 1.42267 1.54852 1.72710 1.84865 2.02164 2.16108 2.43318 2.70878 2.77330 3.10266 3.13817 3.62038 3.71148 3.84177 4.04713 4.11974 4.19701 4.38041 4.44008 4.47625 4.58260 4.67956 4.73237 4.83678 4.86091 4.97127 5.11065 5.19217 5.22098 5.26021 5.32687 5.46734 5.57082 5.64869 5.74773 5.76953 5.78312 6.15174 6.24139 6.54124 6.78363 7.00165 7.15922 7.34526 8.87121 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024219 B = 0.002160 C = 0.002059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.847873 B =12962.054430 C =13594.953533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.171 3.829 3 C -0.107 4.107 4 C -0.082 4.082 5 C -0.113 4.113 6 C -0.075 4.075 7 C -0.144 4.144 8 C 0.547 3.453 9 O -0.584 6.584 10 N -0.711 5.711 11 C 0.140 3.860 12 C 0.022 3.978 13 C -0.546 4.546 14 H 0.058 0.942 15 C 0.008 3.992 16 N -0.926 5.926 17 Si 0.964 3.036 18 H -0.266 1.266 19 H -0.277 1.277 20 H -0.276 1.276 21 C -0.044 4.044 22 N -0.706 5.706 23 C 0.708 3.292 24 O -0.578 6.578 25 N -0.668 5.668 26 C 0.545 3.455 27 O -0.470 6.470 28 H 0.084 0.916 29 H 0.091 0.909 30 H 0.095 0.905 31 H 0.154 0.846 32 H 0.164 0.836 33 H 0.144 0.856 34 H 0.410 0.590 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.009 0.991 38 H 0.011 0.989 39 H 0.266 0.734 40 H 0.133 0.867 41 H 0.449 0.551 42 H 0.443 0.557 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.964 -20.968 -15.402 27.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.080 3.920 3 C -0.109 4.109 4 C -0.100 4.100 5 C -0.131 4.131 6 C -0.094 4.094 7 C -0.147 4.147 8 C 0.336 3.664 9 O -0.465 6.465 10 N -0.361 5.361 11 C 0.017 3.983 12 C -0.015 4.015 13 C -0.584 4.584 14 H 0.077 0.923 15 C -0.191 4.191 16 N -0.565 5.565 17 Si 0.788 3.212 18 H -0.190 1.190 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.063 4.063 22 N -0.371 5.371 23 C 0.408 3.592 24 O -0.454 6.454 25 N -0.339 5.339 26 C 0.331 3.669 27 O -0.339 6.339 28 H 0.103 0.897 29 H 0.110 0.890 30 H 0.114 0.886 31 H 0.172 0.828 32 H 0.182 0.818 33 H 0.162 0.838 34 H 0.247 0.753 35 H 0.068 0.932 36 H 0.066 0.934 37 H 0.028 0.972 38 H 0.029 0.971 39 H 0.075 0.925 40 H 0.151 0.849 41 H 0.295 0.705 42 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges -9.896 -21.413 -14.952 27.929 hybrid contribution 0.715 0.776 0.818 1.335 sum -9.181 -20.637 -14.134 26.645 Atomic orbital electron populations 1.22103 0.86964 1.05030 1.06028 1.20203 0.98669 0.89024 0.84125 1.19285 1.03825 0.93982 0.93788 1.21732 0.94893 0.95244 0.98166 1.21427 0.98423 0.94390 0.98813 1.21707 0.95798 1.00478 0.91401 1.19831 1.06316 0.96129 0.92459 1.18776 0.76685 0.81495 0.89434 1.90720 1.54236 1.67390 1.34202 1.46069 1.65054 1.14237 1.10762 1.21278 0.99227 0.93198 0.84634 1.19144 0.95579 0.90055 0.96755 1.21486 1.44099 0.99378 0.93437 0.92327 1.25848 0.94946 0.98282 1.00045 1.70051 1.45613 1.13735 1.27123 0.85414 0.77934 0.78370 0.79442 1.19021 1.20303 1.20194 1.20874 0.94640 0.92564 0.98262 1.45742 1.54001 1.27567 1.09806 1.15886 0.79215 0.82162 0.81953 1.91063 1.49801 1.42864 1.61658 1.44169 1.50912 1.30656 1.08135 1.20540 0.76695 0.80224 0.89477 1.90806 1.57219 1.68973 1.16947 0.89700 0.88966 0.88583 0.82826 0.81832 0.83813 0.75313 0.93161 0.93404 0.97225 0.97060 0.92525 0.84888 0.70462 0.71222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 8.96 71.98 0.65 -0.47 16 2 C 0.17 2.07 1.16 2.24 0.00 2.07 16 3 C -0.11 -1.67 4.88 -19.90 -0.10 -1.77 16 4 C -0.08 -1.17 9.18 22.33 0.20 -0.97 16 5 C -0.11 -1.59 10.03 22.23 0.22 -1.36 16 6 C -0.08 -1.39 9.54 22.53 0.21 -1.18 16 7 C -0.14 -3.50 5.87 -20.09 -0.12 -3.62 16 8 C 0.55 18.09 7.77 86.79 0.67 18.77 16 9 O -0.58 -23.39 16.35 -3.89 -0.06 -23.45 16 10 N -0.71 -24.01 5.51 -465.97 -2.57 -26.57 16 11 C 0.14 5.89 5.61 86.38 0.48 6.37 16 12 C 0.02 1.09 5.09 29.85 0.15 1.24 16 13 C -0.55 -30.01 9.11 25.60 0.23 -29.77 16 14 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 15 C 0.01 0.42 5.46 84.66 0.46 0.88 16 16 N -0.93 -53.39 13.29 21.45 0.28 -53.11 16 17 Si 0.96 43.11 29.54 68.60 2.03 45.14 16 18 H -0.27 -11.57 7.11 99.48 0.71 -10.87 16 19 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 20 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 21 C -0.04 -0.90 8.89 22.53 0.20 -0.70 16 22 N -0.71 -9.54 5.34 -443.23 -2.37 -11.91 16 23 C 0.71 12.31 8.99 179.44 1.61 13.92 16 24 O -0.58 -14.69 18.04 -3.84 -0.07 -14.76 16 25 N -0.67 -8.38 5.70 -441.13 -2.52 -10.90 16 26 C 0.55 7.18 6.99 87.94 0.61 7.79 16 27 O -0.47 -7.46 15.89 -2.87 -0.05 -7.51 16 28 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.09 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 31 H 0.15 1.95 5.67 -2.91 -0.02 1.93 16 32 H 0.16 1.38 8.06 -2.91 -0.02 1.36 16 33 H 0.14 2.31 6.40 -2.91 -0.02 2.29 16 34 H 0.41 11.63 6.51 -92.71 -0.60 11.02 16 35 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.05 2.10 8.14 -2.39 -0.02 2.09 16 37 H 0.01 0.48 8.14 -2.39 -0.02 0.47 16 38 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 39 H 0.27 14.38 8.31 -92.71 -0.77 13.61 16 40 H 0.13 2.73 6.63 -2.91 -0.02 2.71 16 41 H 0.45 5.32 8.15 -92.71 -0.76 4.57 16 42 H 0.44 3.79 8.96 -92.70 -0.83 2.96 16 Total: -1.00 -73.92 361.94 -0.88 -74.80 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -1.08 Total: 17.06 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: 5.51 Total: 11.21 kcal Atomic # 7 Polarization: -95.32 SS G_CDS: -7.16 Total: -102.48 kcal Atomic # 8 Polarization: -45.54 SS G_CDS: -0.18 Total: -45.72 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -73.92 -0.88 -74.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345155585.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.088 kcal (2) G-P(sol) polarization free energy of solvation -73.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.011 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds