Wall clock time and date at job start Tue Mar 31 2020 16:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34223 * 117.00405 * 2 1 4 4 O 1.20833 * 119.99991 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00499 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47257 * 179.97438 * 5 3 2 7 7 C 1.36880 * 120.00019 * 279.40027 * 6 5 3 8 8 H 1.08002 * 120.00302 * 37.39390 * 7 6 5 9 9 C 1.39040 * 119.99954 * 217.38641 * 7 6 5 10 10 N 1.31370 * 119.99711 * 26.26251 * 9 7 6 11 11 Si 1.86804 * 119.99996 * 206.26190 * 9 7 6 12 12 H 1.48501 * 109.46935 * 65.00102 * 11 9 7 13 13 H 1.48495 * 109.47086 * 184.99959 * 11 9 7 14 14 H 1.48498 * 109.46981 * 305.00092 * 11 9 7 15 15 C 1.34783 * 119.99948 * 99.40206 * 6 5 3 16 16 O 1.21619 * 120.00328 * 186.89205 * 15 6 5 17 17 C 1.47486 * 119.99771 * 6.89058 * 15 6 5 18 18 C 1.40238 * 119.94666 * 331.15968 * 17 15 6 19 19 C 1.36163 * 120.51544 * 179.97438 * 18 17 15 20 20 C 1.40040 * 120.08770 * 359.97438 * 19 18 17 21 21 N 1.35540 * 133.39175 * 179.97438 * 20 19 18 22 22 C 1.30230 * 109.71085 * 180.02562 * 21 20 19 23 23 C 1.50704 * 124.92790 * 180.02562 * 22 21 20 24 24 N 1.35868 * 110.14474 * 359.97438 * 22 21 20 25 25 C 1.46502 * 126.36640 * 180.02562 * 24 22 21 26 26 C 1.38186 * 107.26648 * 0.02562 * 24 22 21 27 27 C 1.38393 * 134.01469 * 179.71080 * 26 24 22 28 28 H 1.09002 * 109.46795 * 60.00491 * 1 2 3 29 29 H 1.09002 * 109.47204 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47388 * 300.00203 * 1 2 3 31 31 H 1.09002 * 109.46753 * 60.00076 * 5 3 2 32 32 H 1.08997 * 109.47241 * 300.00442 * 5 3 2 33 33 H 0.97007 * 120.00006 * 184.98859 * 10 9 7 34 34 H 1.07995 * 119.73962 * 359.97438 * 18 17 15 35 35 H 1.08002 * 119.95414 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.46735 * 89.97613 * 23 22 21 37 37 H 1.09006 * 109.46752 * 209.96867 * 23 22 21 38 38 H 1.08996 * 109.47096 * 329.97199 * 23 22 21 39 39 H 1.09000 * 109.47305 * 269.97403 * 25 24 22 40 40 H 1.09004 * 109.47095 * 29.97469 * 25 24 22 41 41 H 1.09001 * 109.47040 * 149.97756 * 25 24 22 42 42 H 1.08001 * 120.21243 * 0.31956 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 3.9906 3.3901 -1.1701 8 1 3.2162 3.2292 -1.9055 9 6 4.9966 4.3191 -1.4117 10 7 6.1698 4.1811 -0.8370 11 14 4.6797 5.7632 -2.5535 12 1 3.6420 6.6446 -1.9606 13 1 5.9361 6.5328 -2.7385 14 1 4.2092 5.2600 -3.8691 15 6 4.3552 3.2726 1.1512 16 8 4.5792 4.4677 1.1750 17 6 4.4922 2.4720 2.3823 18 6 3.7114 1.3206 2.5591 19 6 3.8288 0.5726 3.6908 20 6 4.7344 0.9492 4.6904 21 7 5.0654 0.4211 5.8940 22 6 5.9803 1.1555 6.4593 23 6 6.5964 0.8808 7.8069 24 7 6.2996 2.2047 5.6573 25 6 7.2852 3.2497 5.9452 26 6 5.5219 2.1030 4.5196 27 6 5.3962 2.8625 3.3696 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.9564 0.7805 -0.8892 32 1 3.9557 0.7808 0.8907 33 1 6.8475 4.8664 -0.9474 34 1 3.0115 1.0249 1.7916 35 1 3.2227 -0.3122 3.8177 36 1 7.4759 0.2492 7.6823 37 1 6.8883 1.8226 8.2717 38 1 5.8706 0.3721 8.4413 39 1 6.7986 4.0748 6.4652 40 1 8.0761 2.8401 6.5736 41 1 7.7143 3.6118 5.0109 42 1 5.9990 3.7485 3.2348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356174285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:19 Heat of formation + Delta-G solvation = 10.596574 kcal Electronic energy + Delta-G solvation = -28826.186983 eV Core-core repulsion = 24774.815708 eV Total energy + Delta-G solvation = -4051.371275 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -42.02565 -40.28150 -38.73102 -36.55679 -35.96803 -34.33400 -34.07564 -32.29513 -31.22590 -30.18488 -28.69141 -27.87468 -26.97718 -26.31963 -24.74572 -22.33822 -22.02773 -20.88959 -20.15982 -19.36524 -17.88346 -17.17707 -17.06870 -16.65685 -16.10507 -15.96870 -15.75217 -15.32858 -14.69349 -14.41066 -13.99855 -13.91329 -13.57023 -13.54054 -13.49275 -13.21382 -12.98338 -12.88518 -12.78395 -12.51428 -12.40288 -12.10030 -11.76572 -11.54423 -11.32109 -11.16891 -10.85969 -10.62441 -10.44975 -10.40497 -10.18308 -10.16273 -9.99972 -9.78918 -8.90375 -8.34899 -8.03951 -7.72431 -7.38128 -6.26341 -3.88756 1.08103 1.69479 2.63762 2.70618 2.79084 3.05958 3.32878 3.39295 3.47408 3.92091 4.16111 4.20661 4.51922 4.59487 4.69890 4.84952 5.03693 5.10292 5.13160 5.22136 5.26204 5.31258 5.31462 5.37675 5.38903 5.44278 5.53558 5.64006 5.69555 5.71395 5.74668 5.84746 5.94849 6.13561 6.37279 6.64355 6.71438 6.75902 6.83796 7.07327 7.23036 7.55896 8.01077 8.08559 8.29610 8.85917 9.02129 9.48499 10.08143 10.82541 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.011259 B = 0.004587 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.402385 B = 6102.558026 C = 8286.987530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.368 6.368 3 C 0.431 3.569 4 O -0.481 6.481 5 C 0.075 3.925 6 N -0.420 5.420 7 C -0.343 4.343 8 H 0.083 0.917 9 C 0.078 3.922 10 N -0.824 5.824 11 Si 0.910 3.090 12 H -0.273 1.273 13 H -0.287 1.287 14 H -0.276 1.276 15 C 0.518 3.482 16 O -0.528 6.528 17 C -0.079 4.079 18 C -0.136 4.136 19 C -0.071 4.071 20 C 0.050 3.950 21 N -0.496 5.496 22 C 0.270 3.730 23 C -0.073 4.073 24 N -0.491 5.491 25 C 0.078 3.922 26 C 0.044 3.956 27 C -0.060 4.060 28 H 0.059 0.941 29 H 0.095 0.905 30 H 0.059 0.941 31 H 0.110 0.890 32 H 0.136 0.864 33 H 0.268 0.732 34 H 0.144 0.856 35 H 0.130 0.870 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.094 0.906 39 H 0.074 0.926 40 H 0.085 0.915 41 H 0.088 0.912 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.570 -8.952 12.450 15.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.285 6.285 3 C 0.271 3.729 4 O -0.366 6.366 5 C -0.051 4.051 6 N -0.140 5.140 7 C -0.468 4.468 8 H 0.101 0.899 9 C -0.133 4.133 10 N -0.457 5.457 11 Si 0.736 3.264 12 H -0.198 1.198 13 H -0.212 1.212 14 H -0.201 1.201 15 C 0.307 3.693 16 O -0.407 6.407 17 C -0.084 4.084 18 C -0.156 4.156 19 C -0.090 4.090 20 C -0.068 4.068 21 N -0.216 5.216 22 C 0.005 3.995 23 C -0.132 4.132 24 N -0.183 5.183 25 C -0.065 4.065 26 C -0.064 4.064 27 C -0.082 4.082 28 H 0.078 0.922 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.128 0.872 32 H 0.152 0.848 33 H 0.078 0.922 34 H 0.161 0.839 35 H 0.148 0.852 36 H 0.104 0.896 37 H 0.095 0.905 38 H 0.112 0.888 39 H 0.092 0.908 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 0.411 -8.573 12.755 15.374 hybrid contribution 0.052 1.546 -0.902 1.791 sum 0.463 -7.026 11.853 13.787 Atomic orbital electron populations 1.23157 0.77507 1.02956 1.02323 1.86539 1.22654 1.34437 1.84890 1.25141 0.93459 0.81282 0.73027 1.90692 1.66652 1.36155 1.43056 1.22140 0.85982 0.89844 1.07132 1.42847 1.58583 1.05756 1.06862 1.18971 1.09226 1.22740 0.95911 0.89879 1.25069 0.92782 0.98875 0.96571 1.69919 1.02367 1.31756 1.41703 0.86307 0.77851 0.82438 0.79774 1.19838 1.21219 1.20139 1.17528 0.83352 0.86950 0.81477 1.90605 1.51646 1.14555 1.83885 1.20149 0.96688 0.95384 0.96192 1.21559 1.01153 0.95145 0.97758 1.19859 0.97454 1.00483 0.91228 1.19045 0.99709 0.94139 0.93956 1.70294 1.15018 1.28682 1.07647 1.23523 0.95222 0.85507 0.95250 1.20317 1.01242 1.02959 0.88644 1.45035 1.34055 1.23659 1.15524 1.21976 0.91006 0.89865 1.03608 1.18765 0.97406 0.99979 0.90235 1.19917 0.99184 0.99163 0.89915 0.92246 0.88610 0.92235 0.87194 0.84765 0.92190 0.83910 0.85203 0.89639 0.90477 0.88767 0.90781 0.89587 0.89371 0.85119 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 10.56 101.05 1.07 1.50 16 2 O -0.37 -5.80 10.56 -39.24 -0.41 -6.22 16 3 C 0.43 8.37 6.17 36.01 0.22 8.59 16 4 O -0.48 -11.10 15.93 -18.76 -0.30 -11.40 16 5 C 0.08 1.50 5.46 -5.19 -0.03 1.47 16 6 N -0.42 -10.74 2.14 -117.30 -0.25 -10.99 16 7 C -0.34 -9.56 8.90 -15.00 -0.13 -9.69 16 8 H 0.08 2.29 7.96 -52.49 -0.42 1.87 16 9 C 0.08 2.21 4.11 -17.45 -0.07 2.14 16 10 N -0.82 -23.87 11.95 55.50 0.66 -23.20 16 11 Si 0.91 22.23 29.63 -169.99 -5.04 17.19 16 12 H -0.27 -6.91 7.11 56.52 0.40 -6.51 16 13 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 C 0.52 13.65 6.65 -12.49 -0.08 13.56 16 16 O -0.53 -15.86 14.49 5.26 0.08 -15.78 16 17 C -0.08 -1.71 5.63 -104.93 -0.59 -2.30 16 18 C -0.14 -2.53 7.43 -39.58 -0.29 -2.82 16 19 C -0.07 -1.20 10.03 -39.65 -0.40 -1.60 16 20 C 0.05 0.90 7.23 -84.61 -0.61 0.29 16 21 N -0.50 -8.20 11.26 -8.17 -0.09 -8.29 16 22 C 0.27 3.61 7.85 -154.88 -1.22 2.40 16 23 C -0.07 -0.56 9.95 36.01 0.36 -0.20 16 24 N -0.49 -6.90 3.21 -118.54 -0.38 -7.28 16 25 C 0.08 0.73 10.76 59.85 0.64 1.38 16 26 C 0.04 0.78 6.86 -84.00 -0.58 0.20 16 27 C -0.06 -1.20 9.58 -39.07 -0.37 -1.57 16 28 H 0.06 0.75 8.13 -51.93 -0.42 0.33 16 29 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 30 H 0.06 0.74 8.13 -51.93 -0.42 0.32 16 31 H 0.11 2.01 8.11 -51.93 -0.42 1.59 16 32 H 0.14 2.41 3.82 -55.64 -0.21 2.20 16 33 H 0.27 7.44 8.32 -40.82 -0.34 7.10 16 34 H 0.14 2.56 3.08 -52.49 -0.16 2.40 16 35 H 0.13 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.42 7.64 -51.93 -0.40 0.02 16 38 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.09 0.53 7.61 -51.93 -0.40 0.14 16 41 H 0.09 0.87 8.14 -51.93 -0.42 0.45 16 42 H 0.13 2.66 7.89 -52.49 -0.41 2.25 16 LS Contribution 357.13 15.07 5.38 5.38 Total: -1.00 -37.78 357.13 -7.37 -45.16 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -4.94 Total: 2.09 kcal Atomic # 6 Polarization: 15.42 SS G_CDS: -2.09 Total: 13.33 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.06 Total: -49.76 kcal Atomic # 8 Polarization: -32.76 SS G_CDS: -0.64 Total: -33.40 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.04 Total: 17.19 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -37.78 -7.37 -45.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356174285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.754 kcal (2) G-P(sol) polarization free energy of solvation -37.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.375 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.158 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds