Wall clock time and date at job start Tue Mar 31 2020 16:10:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45197 * 1 3 3 C 1.34223 * 117.00405 * 2 1 4 4 O 1.20833 * 119.99991 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00499 * 179.97438 * 3 2 1 6 6 N 1.46498 * 109.47257 * 179.97438 * 5 3 2 7 7 C 1.36880 * 120.00019 * 279.40027 * 6 5 3 8 8 H 1.08002 * 120.00302 * 37.39390 * 7 6 5 9 9 C 1.39040 * 119.99954 * 217.38641 * 7 6 5 10 10 N 1.31370 * 119.99711 * 26.26251 * 9 7 6 11 11 Si 1.86804 * 119.99996 * 206.26190 * 9 7 6 12 12 H 1.48501 * 109.46935 * 65.00102 * 11 9 7 13 13 H 1.48495 * 109.47086 * 184.99959 * 11 9 7 14 14 H 1.48498 * 109.46981 * 305.00092 * 11 9 7 15 15 C 1.34783 * 119.99948 * 99.40206 * 6 5 3 16 16 O 1.21619 * 120.00328 * 186.89205 * 15 6 5 17 17 C 1.47486 * 119.99771 * 6.89058 * 15 6 5 18 18 C 1.40238 * 119.94666 * 331.15968 * 17 15 6 19 19 C 1.36163 * 120.51544 * 179.97438 * 18 17 15 20 20 C 1.40040 * 120.08770 * 359.97438 * 19 18 17 21 21 N 1.35540 * 133.39175 * 179.97438 * 20 19 18 22 22 C 1.30230 * 109.71085 * 180.02562 * 21 20 19 23 23 C 1.50704 * 124.92790 * 180.02562 * 22 21 20 24 24 N 1.35868 * 110.14474 * 359.97438 * 22 21 20 25 25 C 1.46502 * 126.36640 * 180.02562 * 24 22 21 26 26 C 1.38186 * 107.26648 * 0.02562 * 24 22 21 27 27 C 1.38393 * 134.01469 * 179.71080 * 26 24 22 28 28 H 1.09002 * 109.46795 * 60.00491 * 1 2 3 29 29 H 1.09002 * 109.47204 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47388 * 300.00203 * 1 2 3 31 31 H 1.09002 * 109.46753 * 60.00076 * 5 3 2 32 32 H 1.08997 * 109.47241 * 300.00442 * 5 3 2 33 33 H 0.97007 * 120.00006 * 184.98859 * 10 9 7 34 34 H 1.07995 * 119.73962 * 359.97438 * 18 17 15 35 35 H 1.08002 * 119.95414 * 179.97438 * 19 18 17 36 36 H 1.09000 * 109.46735 * 89.97613 * 23 22 21 37 37 H 1.09006 * 109.46752 * 209.96867 * 23 22 21 38 38 H 1.08996 * 109.47096 * 329.97199 * 23 22 21 39 39 H 1.09000 * 109.47305 * 269.97403 * 25 24 22 40 40 H 1.09004 * 109.47095 * 29.97469 * 25 24 22 41 41 H 1.09001 * 109.47040 * 149.97756 * 25 24 22 42 42 H 1.08001 * 120.21243 * 0.31956 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 3.9817 2.6797 -0.0002 7 6 3.9906 3.3901 -1.1701 8 1 3.2162 3.2292 -1.9055 9 6 4.9966 4.3191 -1.4117 10 7 6.1698 4.1811 -0.8370 11 14 4.6797 5.7632 -2.5535 12 1 3.6420 6.6446 -1.9606 13 1 5.9361 6.5328 -2.7385 14 1 4.2092 5.2600 -3.8691 15 6 4.3552 3.2726 1.1512 16 8 4.5792 4.4677 1.1750 17 6 4.4922 2.4720 2.3823 18 6 3.7114 1.3206 2.5591 19 6 3.8288 0.5726 3.6908 20 6 4.7344 0.9492 4.6904 21 7 5.0654 0.4211 5.8940 22 6 5.9803 1.1555 6.4593 23 6 6.5964 0.8808 7.8069 24 7 6.2996 2.2047 5.6573 25 6 7.2852 3.2497 5.9452 26 6 5.5219 2.1030 4.5196 27 6 5.3962 2.8625 3.3696 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 3.9564 0.7805 -0.8892 32 1 3.9557 0.7808 0.8907 33 1 6.8475 4.8664 -0.9474 34 1 3.0115 1.0249 1.7916 35 1 3.2227 -0.3122 3.8177 36 1 7.4759 0.2492 7.6823 37 1 6.8883 1.8226 8.2717 38 1 5.8706 0.3721 8.4413 39 1 6.7986 4.0748 6.4652 40 1 8.0761 2.8401 6.5736 41 1 7.7143 3.6118 5.0109 42 1 5.9990 3.7485 3.2348 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356174285.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:19 Heat of formation + Delta-G solvation = -14.150374 kcal Electronic energy + Delta-G solvation = -28827.260091 eV Core-core repulsion = 24774.815708 eV Total energy + Delta-G solvation = -4052.444383 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.26126 -41.85352 -40.41652 -38.07961 -37.51011 -36.23031 -35.24865 -34.18321 -32.41438 -31.56525 -30.22142 -29.13652 -28.00874 -27.61786 -26.59798 -23.89783 -23.34429 -22.41587 -21.57533 -20.83842 -19.38646 -18.70936 -18.66687 -18.14549 -17.54983 -17.22145 -17.08912 -17.02233 -16.34734 -16.16742 -15.50688 -15.38884 -15.08099 -14.94636 -14.44430 -14.35049 -14.27923 -14.16853 -13.90381 -13.71283 -13.54466 -13.43063 -13.17570 -12.97270 -12.89643 -12.81457 -12.76357 -12.33520 -12.19987 -11.81131 -11.74220 -11.66544 -11.39193 -11.07247 -10.92268 -10.36207 -9.46362 -9.34907 -9.11747 -8.36748 -6.03006 -0.31149 0.26870 1.15561 1.33751 1.43176 1.46186 1.52102 1.57375 1.71030 2.21027 2.44486 2.78286 3.01328 3.12875 3.19575 3.49313 3.77312 3.79034 3.92078 4.00301 4.12149 4.23636 4.25230 4.32948 4.35059 4.38199 4.38879 4.53230 4.60100 4.62420 4.70660 4.74451 4.74614 4.97743 5.08787 5.28076 5.32323 5.33470 5.34791 5.43590 5.68710 6.05051 6.16765 6.77117 6.80717 6.82361 7.00811 7.45158 8.09085 8.72165 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.011259 B = 0.004587 C = 0.003378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.402385 B = 6102.558026 C = 8286.987530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.355 6.355 3 C 0.444 3.556 4 O -0.524 6.524 5 C 0.071 3.929 6 N -0.435 5.435 7 C -0.363 4.363 8 H 0.078 0.922 9 C 0.035 3.965 10 N -0.855 5.855 11 Si 0.963 3.037 12 H -0.291 1.291 13 H -0.278 1.278 14 H -0.253 1.253 15 C 0.509 3.491 16 O -0.583 6.583 17 C -0.112 4.112 18 C -0.134 4.134 19 C -0.062 4.062 20 C 0.046 3.954 21 N -0.526 5.526 22 C 0.289 3.711 23 C -0.073 4.073 24 N -0.491 5.491 25 C 0.067 3.933 26 C 0.027 3.973 27 C -0.060 4.060 28 H 0.055 0.945 29 H 0.142 0.858 30 H 0.059 0.941 31 H 0.126 0.874 32 H 0.158 0.842 33 H 0.265 0.735 34 H 0.149 0.851 35 H 0.162 0.838 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.104 0.896 39 H 0.088 0.912 40 H 0.128 0.872 41 H 0.076 0.924 42 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.800 -11.222 14.888 18.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.271 6.271 3 C 0.286 3.714 4 O -0.412 6.412 5 C -0.054 4.054 6 N -0.154 5.154 7 C -0.489 4.489 8 H 0.096 0.904 9 C -0.173 4.173 10 N -0.489 5.489 11 Si 0.787 3.213 12 H -0.217 1.217 13 H -0.203 1.203 14 H -0.177 1.177 15 C 0.300 3.700 16 O -0.466 6.466 17 C -0.117 4.117 18 C -0.154 4.154 19 C -0.081 4.081 20 C -0.074 4.074 21 N -0.248 5.248 22 C 0.024 3.976 23 C -0.131 4.131 24 N -0.181 5.181 25 C -0.073 4.073 26 C -0.082 4.082 27 C -0.082 4.082 28 H 0.074 0.926 29 H 0.160 0.840 30 H 0.078 0.922 31 H 0.144 0.856 32 H 0.175 0.825 33 H 0.075 0.925 34 H 0.166 0.834 35 H 0.179 0.821 36 H 0.127 0.873 37 H 0.126 0.874 38 H 0.122 0.878 39 H 0.107 0.893 40 H 0.147 0.853 41 H 0.095 0.905 42 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.651 -10.900 15.187 18.705 hybrid contribution -0.029 2.108 -1.391 2.526 sum 0.622 -8.793 13.795 16.371 Atomic orbital electron populations 1.23574 0.75027 1.05905 1.02208 1.86510 1.24849 1.31852 1.83928 1.24748 0.93032 0.81650 0.71954 1.90683 1.67416 1.37800 1.45344 1.22336 0.86848 0.87165 1.09052 1.42947 1.58635 1.07779 1.06068 1.19122 1.09000 1.24229 0.96578 0.90439 1.25840 0.92637 1.00760 0.98056 1.69979 1.02988 1.32295 1.43644 0.85495 0.77401 0.79402 0.78997 1.21740 1.20299 1.17735 1.18267 0.81949 0.86882 0.82882 1.90533 1.53963 1.16929 1.85177 1.19842 0.99633 0.97087 0.95131 1.21436 1.00854 0.94339 0.98793 1.20115 0.97134 1.00783 0.90100 1.19423 0.99306 0.93942 0.94680 1.70367 1.17110 1.30000 1.07288 1.24722 0.93097 0.83584 0.96164 1.20661 1.01901 1.05210 0.85330 1.45403 1.33875 1.24607 1.14205 1.22357 0.91239 0.89644 1.04052 1.18715 0.98684 0.99923 0.90875 1.19751 0.98849 0.98868 0.90759 0.92632 0.84047 0.92247 0.85644 0.82524 0.92508 0.83433 0.82074 0.87300 0.87425 0.87779 0.89311 0.85324 0.90527 0.86855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.79 16 2 O -0.36 -10.62 10.56 -51.35 -0.54 -11.17 16 3 C 0.44 17.29 6.17 71.24 0.44 17.73 16 4 O -0.52 -24.80 15.93 21.94 0.35 -24.45 16 5 C 0.07 2.87 5.46 85.63 0.47 3.34 16 6 N -0.43 -23.19 2.14 -643.26 -1.38 -24.57 16 7 C -0.36 -21.11 8.90 84.10 0.75 -20.36 16 8 H 0.08 4.45 7.96 -2.91 -0.02 4.42 16 9 C 0.04 2.06 4.11 84.95 0.35 2.40 16 10 N -0.85 -51.81 11.95 21.68 0.26 -51.56 16 11 Si 0.96 47.19 29.63 68.60 2.03 49.23 16 12 H -0.29 -14.98 7.11 99.48 0.71 -14.27 16 13 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 14 H -0.25 -11.35 7.11 99.48 0.71 -10.64 16 15 C 0.51 28.36 6.65 86.68 0.58 28.94 16 16 O -0.58 -37.37 14.49 -4.09 -0.06 -37.43 16 17 C -0.11 -5.08 5.63 -20.06 -0.11 -5.19 16 18 C -0.13 -5.00 7.43 22.27 0.17 -4.83 16 19 C -0.06 -2.02 10.03 22.22 0.22 -1.80 16 20 C 0.05 1.58 7.23 39.62 0.29 1.86 16 21 N -0.53 -16.05 11.26 -179.77 -2.02 -18.07 16 22 C 0.29 6.76 7.85 137.94 1.08 7.85 16 23 C -0.07 -0.75 9.95 71.24 0.71 -0.04 16 24 N -0.49 -12.71 3.21 -528.94 -1.70 -14.41 16 25 C 0.07 1.10 10.76 127.77 1.37 2.47 16 26 C 0.03 0.95 6.86 38.79 0.27 1.22 16 27 C -0.06 -2.52 9.58 22.60 0.22 -2.31 16 28 H 0.05 1.33 8.13 -2.39 -0.02 1.31 16 29 H 0.14 1.94 8.14 -2.39 -0.02 1.92 16 30 H 0.06 1.38 8.13 -2.39 -0.02 1.36 16 31 H 0.13 4.63 8.11 -2.39 -0.02 4.62 16 32 H 0.16 5.66 3.82 -5.88 -0.02 5.64 16 33 H 0.27 15.44 8.32 -92.70 -0.77 14.67 16 34 H 0.15 5.27 3.08 -2.91 -0.01 5.26 16 35 H 0.16 4.14 8.06 -2.91 -0.02 4.12 16 36 H 0.11 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.11 0.52 7.64 -2.38 -0.02 0.50 16 38 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.09 1.22 8.14 -2.39 -0.02 1.21 16 40 H 0.13 1.00 7.61 -2.38 -0.02 0.98 16 41 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 42 H 0.11 4.99 7.89 -2.91 -0.02 4.97 16 Total: -1.00 -88.50 357.13 5.99 -82.52 By element: Atomic # 1 Polarization: 15.77 SS G_CDS: 1.06 Total: 16.83 kcal Atomic # 6 Polarization: 25.09 SS G_CDS: 7.99 Total: 33.08 kcal Atomic # 7 Polarization: -103.77 SS G_CDS: -4.84 Total: -108.61 kcal Atomic # 8 Polarization: -72.79 SS G_CDS: -0.25 Total: -73.05 kcal Atomic # 14 Polarization: 47.19 SS G_CDS: 2.03 Total: 49.23 kcal Total: -88.50 5.99 -82.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356174285.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.366 kcal (2) G-P(sol) polarization free energy of solvation -88.503 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.137 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.150 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds