Wall clock time and date at job start Tue Mar 31 2020 16:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47414 * 2 1 4 4 C 1.50708 * 109.46894 * 239.99981 * 2 1 3 5 5 H 1.07997 * 119.99690 * 240.00161 * 4 2 1 6 6 C 1.37875 * 120.00050 * 59.99862 * 4 2 1 7 7 N 1.31516 * 119.99915 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00185 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46940 * 60.00393 * 8 6 4 10 10 H 1.48496 * 109.47341 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47121 * 300.00922 * 8 6 4 12 12 C 1.53003 * 109.46870 * 120.00486 * 2 1 3 13 13 N 1.46499 * 109.46708 * 299.99298 * 12 2 1 14 14 C 1.34784 * 119.99893 * 180.02562 * 13 12 2 15 15 O 1.21538 * 119.99608 * 359.97438 * 14 13 12 16 16 C 1.47962 * 120.00001 * 179.72903 * 14 13 12 17 17 C 1.39600 * 120.00113 * 359.72203 * 16 14 13 18 18 C 1.37772 * 119.99666 * 179.79375 * 17 16 14 19 19 C 1.39585 * 120.00118 * 0.48249 * 18 17 16 20 20 C 1.47997 * 119.99881 * 179.72208 * 19 18 17 21 21 N 1.32614 * 126.33978 * 180.02562 * 20 19 18 22 22 C 1.34082 * 105.78298 * 180.02562 * 21 20 19 23 23 O 1.21926 * 126.42665 * 180.02562 * 22 21 20 24 24 O 1.34158 * 107.14851 * 359.97438 * 22 21 20 25 25 N 1.21326 * 109.80712 * 359.70622 * 24 22 21 26 26 H 0.96997 * 125.03126 * 180.26480 * 25 24 22 27 27 C 1.39582 * 120.00345 * 359.74975 * 19 18 17 28 28 C 1.37772 * 120.00137 * 0.02562 * 27 19 18 29 29 H 1.09007 * 109.46830 * 300.00287 * 1 2 3 30 30 H 1.09005 * 109.46980 * 59.99998 * 1 2 3 31 31 H 1.08994 * 109.47292 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.46855 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47095 * 300.00040 * 3 2 1 34 34 H 1.08998 * 109.46768 * 59.99989 * 3 2 1 35 35 H 0.97000 * 120.00246 * 179.97438 * 7 6 4 36 36 H 1.08998 * 109.46692 * 179.97438 * 12 2 1 37 37 H 1.08994 * 109.47584 * 59.99664 * 12 2 1 38 38 H 0.97005 * 120.00261 * 0.02562 * 13 12 2 39 39 H 1.07995 * 120.00136 * 0.02562 * 17 16 14 40 40 H 1.07998 * 119.99968 * 180.25080 * 18 17 16 41 41 H 1.07992 * 119.99931 * 180.02562 * 27 19 18 42 42 H 1.08004 * 120.00167 * 179.97438 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1192 -4.0077 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5763 -1.4792 3.7810 16 6 1.3895 0.2101 4.8776 17 6 0.5961 1.3516 4.7496 18 6 0.1381 2.0018 5.8745 19 6 0.4756 1.5251 7.1423 20 6 -0.0113 2.2273 8.3506 21 7 0.2317 1.8865 9.6090 22 6 -0.4029 2.7963 10.3622 23 8 -0.4272 2.8377 11.5806 24 8 -1.0054 3.6531 9.5239 25 7 -0.7779 3.3335 8.3759 26 1 -1.1032 3.8034 7.5922 27 6 1.2729 0.3866 7.2704 28 6 1.7272 -0.2664 6.1455 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 0.7094 1.1618 -3.4844 36 1 3.1300 -0.7218 1.2490 37 1 1.6766 -1.7490 1.2492 38 1 0.9938 0.7579 2.3564 39 1 0.3383 1.7227 3.7687 40 1 -0.4791 2.8825 5.7755 41 1 1.5337 0.0177 8.2512 42 1 2.3445 -1.1471 6.2446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412413539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:46 Heat of formation + Delta-G solvation = 29.680671 kcal Electronic energy + Delta-G solvation = -26981.646890 eV Core-core repulsion = 22931.103163 eV Total energy + Delta-G solvation = -4050.543727 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -45.98212 -40.43372 -38.80827 -38.40296 -36.57853 -36.16528 -33.63080 -33.16999 -31.83742 -31.34936 -30.71134 -26.52200 -25.86562 -25.54966 -24.92888 -24.18537 -23.08446 -22.20774 -20.74172 -20.42159 -19.06333 -18.93635 -18.17704 -17.53029 -16.55203 -16.05738 -15.80201 -15.67498 -15.18142 -15.05852 -14.69826 -14.63834 -14.13640 -14.10628 -13.79773 -13.57259 -13.02325 -12.98938 -12.70370 -12.33106 -12.19850 -12.18306 -11.61470 -11.51741 -11.30194 -11.00706 -10.94663 -10.81863 -10.51872 -10.31014 -9.91630 -9.77354 -9.60440 -9.58980 -9.46446 -9.43305 -8.92403 -8.63140 -8.45024 -6.12010 -4.22248 -0.40954 0.80482 0.99473 1.23784 2.38807 2.61372 2.78233 3.23822 3.28571 3.29866 3.34804 3.38571 3.54873 4.06137 4.19345 4.31781 4.35706 4.62816 4.76887 4.95335 5.10855 5.15187 5.18591 5.41204 5.60345 5.64778 5.88183 5.92965 6.08438 6.17358 6.20450 6.35961 6.59465 6.66004 6.77348 6.80671 6.87933 7.13340 7.21344 7.42284 7.45784 7.58807 7.78455 7.88478 8.01266 8.25561 8.39597 8.77939 9.44130 10.89428 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.031944 B = 0.002037 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.315740 B =13743.606887 C =14428.837500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.056 3.944 3 C -0.132 4.132 4 C -0.507 4.507 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.129 3.871 13 N -0.705 5.705 14 C 0.540 3.460 15 O -0.538 6.538 16 C -0.083 4.083 17 C -0.090 4.090 18 C -0.088 4.088 19 C -0.053 4.053 20 C 0.404 3.596 21 N -0.544 5.544 22 C 0.560 3.440 23 O -0.470 6.470 24 O -0.081 6.081 25 N -0.500 5.500 26 H 0.471 0.529 27 C -0.053 4.053 28 C -0.067 4.067 29 H 0.004 0.996 30 H 0.087 0.913 31 H 0.028 0.972 32 H 0.028 0.972 33 H 0.087 0.913 34 H 0.004 0.996 35 H 0.261 0.739 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.398 0.602 39 H 0.142 0.858 40 H 0.133 0.867 41 H 0.151 0.849 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.579 6.555 14.590 16.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.189 4.189 4 C -0.546 4.546 5 H 0.076 0.924 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.722 3.278 9 H -0.202 1.202 10 H -0.213 1.213 11 H -0.202 1.202 12 C 0.007 3.993 13 N -0.356 5.356 14 C 0.325 3.675 15 O -0.417 6.417 16 C -0.087 4.087 17 C -0.109 4.109 18 C -0.108 4.108 19 C -0.056 4.056 20 C 0.139 3.861 21 N -0.306 5.306 22 C 0.309 3.691 23 O -0.350 6.350 24 O -0.104 6.104 25 N -0.167 5.167 26 H 0.325 0.675 27 C -0.073 4.073 28 C -0.086 4.086 29 H 0.023 0.977 30 H 0.105 0.895 31 H 0.047 0.953 32 H 0.047 0.953 33 H 0.105 0.895 34 H 0.023 0.977 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.234 0.766 39 H 0.160 0.840 40 H 0.150 0.850 41 H 0.169 0.831 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -3.995 5.740 15.760 17.242 hybrid contribution -0.598 0.846 -1.384 1.729 sum -4.593 6.585 14.376 16.466 Atomic orbital electron populations 1.21850 0.97713 0.99319 1.00045 1.18372 0.92824 0.92784 0.90522 1.21846 0.98744 0.98287 1.00046 1.20918 1.31688 1.12200 0.89784 0.92402 1.24875 0.94793 0.94913 0.98903 1.69776 1.36548 1.22662 1.23456 0.86615 0.79272 0.79801 0.82082 1.20243 1.21318 1.20247 1.21835 0.98465 0.95970 0.82997 1.46300 1.51849 1.31524 1.05919 1.18235 0.81307 0.84554 0.83435 1.90777 1.38099 1.26082 1.86732 1.20558 0.97605 0.95612 0.94881 1.21310 0.96107 0.94271 0.99224 1.21003 0.99321 0.99742 0.90709 1.17639 1.02993 0.97603 0.87339 1.23291 0.84696 0.83261 0.94826 1.73569 1.30694 1.27411 0.98911 1.21783 0.79453 0.79076 0.88803 1.91199 1.63741 1.73502 1.06567 1.85238 1.66937 1.52013 1.06168 1.42500 1.48105 1.26839 0.99281 0.67472 1.21323 0.93449 0.92166 1.00323 1.21378 0.97503 0.99697 0.90031 0.97669 0.89471 0.95291 0.95291 0.89468 0.97670 0.92877 0.92242 0.92247 0.76567 0.84009 0.84959 0.83093 0.83093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.68 8.08 37.16 0.30 -2.38 16 2 C 0.06 1.17 0.50 -155.65 -0.08 1.10 16 3 C -0.13 -2.68 8.08 37.16 0.30 -2.38 16 4 C -0.51 -12.44 8.01 -34.44 -0.28 -12.72 16 5 H 0.06 1.44 7.74 -52.49 -0.41 1.03 16 6 C 0.07 1.66 5.15 -17.82 -0.09 1.57 16 7 N -0.89 -22.27 9.35 55.43 0.52 -21.75 16 8 Si 0.89 19.79 29.54 -169.99 -5.02 14.77 16 9 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 10 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 C 0.13 2.46 4.50 -4.04 -0.02 2.44 16 13 N -0.71 -10.65 4.91 -61.21 -0.30 -10.95 16 14 C 0.54 7.94 7.78 -12.27 -0.10 7.84 16 15 O -0.54 -9.87 16.33 5.33 0.09 -9.79 16 16 C -0.08 -0.86 5.88 -104.90 -0.62 -1.48 16 17 C -0.09 -0.67 9.53 -39.24 -0.37 -1.04 16 18 C -0.09 -0.44 9.68 -39.25 -0.38 -0.82 16 19 C -0.05 -0.35 5.88 -104.89 -0.62 -0.97 16 20 C 0.40 2.97 7.80 -155.29 -1.21 1.75 16 21 N -0.54 -6.07 11.22 -14.88 -0.17 -6.23 16 22 C 0.56 6.97 9.60 53.47 0.51 7.49 16 23 O -0.47 -7.59 18.07 -19.20 -0.35 -7.94 16 24 O -0.08 -0.70 11.33 -7.43 -0.08 -0.78 16 25 N -0.50 -2.52 6.74 31.96 0.22 -2.31 16 26 H 0.47 0.19 8.00 -40.82 -0.33 -0.14 16 27 C -0.05 -0.40 9.68 -39.25 -0.38 -0.78 16 28 C -0.07 -0.62 9.58 -39.25 -0.38 -1.00 16 29 H 0.00 0.08 6.86 -51.93 -0.36 -0.28 16 30 H 0.09 2.00 6.07 -51.93 -0.32 1.68 16 31 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.09 2.00 6.07 -51.93 -0.32 1.68 16 34 H 0.00 0.07 6.86 -51.93 -0.36 -0.28 16 35 H 0.26 6.39 8.31 -40.82 -0.34 6.05 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.40 5.13 4.18 -40.82 -0.17 4.96 16 39 H 0.14 0.88 6.39 -52.49 -0.34 0.54 16 40 H 0.13 0.14 7.13 -52.49 -0.37 -0.23 16 41 H 0.15 1.07 7.85 -52.49 -0.41 0.66 16 42 H 0.15 1.42 7.64 -52.48 -0.40 1.02 16 LS Contribution 354.21 15.07 5.34 5.34 Total: -1.00 -32.12 354.21 -7.76 -39.88 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -4.59 Total: 1.13 kcal Atomic # 6 Polarization: 2.03 SS G_CDS: -3.40 Total: -1.37 kcal Atomic # 7 Polarization: -41.50 SS G_CDS: 0.27 Total: -41.24 kcal Atomic # 8 Polarization: -18.16 SS G_CDS: -0.34 Total: -18.51 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -5.02 Total: 14.77 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.12 -7.76 -39.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412413539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.558 kcal (2) G-P(sol) polarization free energy of solvation -32.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.756 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds