Wall clock time and date at job start Tue Mar 31 2020 16:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53000 * 109.47414 * 2 1 4 4 C 1.50708 * 109.46894 * 239.99981 * 2 1 3 5 5 H 1.07997 * 119.99690 * 240.00161 * 4 2 1 6 6 C 1.37875 * 120.00050 * 59.99862 * 4 2 1 7 7 N 1.31516 * 119.99915 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00185 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46940 * 60.00393 * 8 6 4 10 10 H 1.48496 * 109.47341 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47121 * 300.00922 * 8 6 4 12 12 C 1.53003 * 109.46870 * 120.00486 * 2 1 3 13 13 N 1.46499 * 109.46708 * 299.99298 * 12 2 1 14 14 C 1.34784 * 119.99893 * 180.02562 * 13 12 2 15 15 O 1.21538 * 119.99608 * 359.97438 * 14 13 12 16 16 C 1.47962 * 120.00001 * 179.72903 * 14 13 12 17 17 C 1.39600 * 120.00113 * 359.72203 * 16 14 13 18 18 C 1.37772 * 119.99666 * 179.79375 * 17 16 14 19 19 C 1.39585 * 120.00118 * 0.48249 * 18 17 16 20 20 C 1.47997 * 119.99881 * 179.72208 * 19 18 17 21 21 N 1.32614 * 126.33978 * 180.02562 * 20 19 18 22 22 C 1.34082 * 105.78298 * 180.02562 * 21 20 19 23 23 O 1.21926 * 126.42665 * 180.02562 * 22 21 20 24 24 O 1.34158 * 107.14851 * 359.97438 * 22 21 20 25 25 N 1.21326 * 109.80712 * 359.70622 * 24 22 21 26 26 H 0.96997 * 125.03126 * 180.26480 * 25 24 22 27 27 C 1.39582 * 120.00345 * 359.74975 * 19 18 17 28 28 C 1.37772 * 120.00137 * 0.02562 * 27 19 18 29 29 H 1.09007 * 109.46830 * 300.00287 * 1 2 3 30 30 H 1.09005 * 109.46980 * 59.99998 * 1 2 3 31 31 H 1.08994 * 109.47292 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.46855 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47095 * 300.00040 * 3 2 1 34 34 H 1.08998 * 109.46768 * 59.99989 * 3 2 1 35 35 H 0.97000 * 120.00246 * 179.97438 * 7 6 4 36 36 H 1.08998 * 109.46692 * 179.97438 * 12 2 1 37 37 H 1.08994 * 109.47584 * 59.99664 * 12 2 1 38 38 H 0.97005 * 120.00261 * 0.02562 * 13 12 2 39 39 H 1.07995 * 120.00136 * 0.02562 * 17 16 14 40 40 H 1.07998 * 119.99968 * 180.25080 * 18 17 16 41 41 H 1.07992 * 119.99931 * 180.02562 * 27 19 18 42 42 H 1.08004 * 120.00167 * 179.97438 * 28 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8302 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1192 -4.0077 12 6 2.0400 -0.7214 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8777 -0.4909 3.6695 15 8 2.5763 -1.4792 3.7810 16 6 1.3895 0.2101 4.8776 17 6 0.5961 1.3516 4.7496 18 6 0.1381 2.0018 5.8745 19 6 0.4756 1.5251 7.1423 20 6 -0.0113 2.2273 8.3506 21 7 0.2317 1.8865 9.6090 22 6 -0.4029 2.7963 10.3622 23 8 -0.4272 2.8377 11.5806 24 8 -1.0054 3.6531 9.5239 25 7 -0.7779 3.3335 8.3759 26 1 -1.1032 3.8034 7.5922 27 6 1.2729 0.3866 7.2704 28 6 1.7272 -0.2664 6.1455 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6768 1.9563 0.8900 35 1 0.7094 1.1618 -3.4844 36 1 3.1300 -0.7218 1.2490 37 1 1.6766 -1.7490 1.2492 38 1 0.9938 0.7579 2.3564 39 1 0.3383 1.7227 3.7687 40 1 -0.4791 2.8825 5.7755 41 1 1.5337 0.0177 8.2512 42 1 2.3445 -1.1471 6.2446 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412413539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:29:45 Heat of formation + Delta-G solvation = 7.057332 kcal Electronic energy + Delta-G solvation = -26982.627911 eV Core-core repulsion = 22931.103163 eV Total energy + Delta-G solvation = -4051.524748 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -46.67795 -41.35834 -39.77945 -39.33897 -38.09517 -36.96418 -35.10876 -33.92960 -33.04270 -31.99373 -31.92497 -27.70881 -27.51242 -27.18058 -26.02523 -25.07417 -23.76641 -23.00361 -21.65535 -21.15461 -20.62008 -19.65651 -19.21451 -18.40439 -17.74468 -17.39459 -16.82664 -16.70094 -16.46366 -16.31093 -15.80532 -15.56964 -14.99427 -14.91951 -14.72406 -14.70750 -14.51049 -14.25524 -13.92281 -13.47338 -13.18959 -13.06594 -12.97745 -12.94036 -12.64349 -12.61399 -12.21091 -12.20085 -12.11369 -11.90403 -11.44672 -11.31013 -10.97537 -10.67209 -10.40829 -10.37049 -10.21316 -10.14533 -9.88487 -8.00343 -6.14859 -1.08166 0.25012 0.26129 0.65755 1.45314 1.47717 1.51647 1.53070 1.83773 1.90568 2.20484 2.49787 2.67934 2.73946 3.23774 3.43825 3.71577 3.76553 3.78609 4.12471 4.26308 4.44475 4.47321 4.54519 4.55994 4.75573 4.89356 4.99441 5.04032 5.08668 5.09676 5.14314 5.24168 5.27419 5.36274 5.47329 5.57533 5.61744 5.70906 5.72209 6.21278 6.25405 6.26516 6.46998 6.61363 6.72332 6.88943 7.23063 7.52598 8.97941 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.031944 B = 0.002037 C = 0.001940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 876.315740 B =13743.606887 C =14428.837500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.122 4.122 4 C -0.528 4.528 5 H 0.043 0.957 6 C 0.030 3.970 7 N -0.896 5.896 8 Si 0.940 3.060 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.279 1.279 12 C 0.145 3.855 13 N -0.699 5.699 14 C 0.540 3.460 15 O -0.583 6.583 16 C -0.100 4.100 17 C -0.085 4.085 18 C -0.062 4.062 19 C -0.044 4.044 20 C 0.416 3.584 21 N -0.574 5.574 22 C 0.555 3.445 23 O -0.522 6.522 24 O -0.071 6.071 25 N -0.470 5.470 26 H 0.494 0.506 27 C -0.053 4.053 28 C -0.074 4.074 29 H 0.043 0.957 30 H 0.062 0.938 31 H 0.017 0.983 32 H 0.017 0.983 33 H 0.062 0.938 34 H 0.043 0.957 35 H 0.260 0.740 36 H 0.041 0.959 37 H 0.041 0.959 38 H 0.411 0.589 39 H 0.161 0.839 40 H 0.185 0.815 41 H 0.152 0.848 42 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.100 8.725 14.791 18.224 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 C -0.180 4.180 4 C -0.567 4.567 5 H 0.061 0.939 6 C -0.170 4.170 7 N -0.535 5.535 8 Si 0.767 3.233 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.204 1.204 12 C 0.022 3.978 13 N -0.350 5.350 14 C 0.328 3.672 15 O -0.465 6.465 16 C -0.104 4.104 17 C -0.103 4.103 18 C -0.082 4.082 19 C -0.047 4.047 20 C 0.152 3.848 21 N -0.337 5.337 22 C 0.304 3.696 23 O -0.407 6.407 24 O -0.093 6.093 25 N -0.138 5.138 26 H 0.355 0.645 27 C -0.073 4.073 28 C -0.093 4.093 29 H 0.062 0.938 30 H 0.081 0.919 31 H 0.036 0.964 32 H 0.036 0.964 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.250 0.750 39 H 0.179 0.821 40 H 0.203 0.797 41 H 0.170 0.830 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -5.557 7.969 15.886 18.621 hybrid contribution -0.141 0.194 -1.476 1.496 sum -5.698 8.162 14.410 17.514 Atomic orbital electron populations 1.21690 0.96855 0.98771 1.00693 1.18372 0.93445 0.93144 0.90054 1.21686 0.97959 0.97663 1.00697 1.21245 1.31643 1.12143 0.91622 0.93866 1.25387 0.95245 0.95623 1.00757 1.69875 1.36912 1.23100 1.23594 0.85901 0.78590 0.78855 0.79936 1.20441 1.20965 1.20449 1.21338 0.97275 0.95245 0.83980 1.46034 1.52177 1.31783 1.05026 1.18863 0.80132 0.83936 0.84262 1.90754 1.40102 1.28239 1.87403 1.20232 1.00064 0.97313 0.92817 1.21512 0.94926 0.92888 1.00981 1.21438 0.97881 1.00214 0.88641 1.17666 1.02358 0.96926 0.87714 1.23197 0.84326 0.83411 0.93900 1.73529 1.31736 1.27942 1.00498 1.21790 0.79691 0.79522 0.88569 1.91150 1.65844 1.74975 1.08693 1.85227 1.65997 1.51053 1.07040 1.42670 1.46406 1.25846 0.98861 0.64546 1.21298 0.93639 0.92619 0.99751 1.21259 0.97984 0.99798 0.90301 0.93801 0.91898 0.96414 0.96411 0.91896 0.93794 0.93061 0.94041 0.94051 0.74984 0.82134 0.79735 0.83015 0.84399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.82 8.08 71.98 0.58 -4.23 16 2 C 0.05 2.11 0.50 -52.92 -0.03 2.08 16 3 C -0.12 -4.81 8.08 71.98 0.58 -4.23 16 4 C -0.53 -26.23 8.01 25.60 0.21 -26.02 16 5 H 0.04 2.21 7.74 -2.91 -0.02 2.19 16 6 C 0.03 1.49 5.15 84.65 0.44 1.93 16 7 N -0.90 -44.95 9.35 21.45 0.20 -44.75 16 8 Si 0.94 40.79 29.54 68.60 2.03 42.82 16 9 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 10 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 12 C 0.15 5.53 4.50 86.38 0.39 5.92 16 13 N -0.70 -19.97 4.91 -465.86 -2.29 -22.26 16 14 C 0.54 15.47 7.78 86.82 0.68 16.15 16 15 O -0.58 -21.91 16.33 -3.84 -0.06 -21.97 16 16 C -0.10 -1.88 5.88 -20.04 -0.12 -1.99 16 17 C -0.08 -0.85 9.53 22.49 0.21 -0.63 16 18 C -0.06 -0.26 9.68 22.48 0.22 -0.04 16 19 C -0.04 -0.40 5.88 -20.04 -0.12 -0.52 16 20 C 0.42 4.58 7.80 136.81 1.07 5.65 16 21 N -0.57 -11.79 11.22 -432.39 -4.85 -16.64 16 22 C 0.55 13.18 9.60 130.00 1.25 14.43 16 23 O -0.52 -17.09 18.07 18.05 0.33 -16.76 16 24 O -0.07 -1.01 11.33 93.13 1.06 0.04 16 25 N -0.47 -2.60 6.74 -53.62 -0.36 -2.97 16 26 H 0.49 -2.64 8.00 -92.71 -0.74 -3.38 16 27 C -0.05 -0.71 9.68 22.48 0.22 -0.49 16 28 C -0.07 -1.30 9.58 22.49 0.22 -1.08 16 29 H 0.04 1.34 6.86 -2.38 -0.02 1.32 16 30 H 0.06 2.82 6.07 -2.38 -0.01 2.80 16 31 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.02 0.69 8.14 -2.39 -0.02 0.68 16 33 H 0.06 2.82 6.07 -2.39 -0.01 2.80 16 34 H 0.04 1.34 6.86 -2.39 -0.02 1.32 16 35 H 0.26 12.67 8.31 -92.71 -0.77 11.90 16 36 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 37 H 0.04 1.70 8.14 -2.39 -0.02 1.68 16 38 H 0.41 9.19 4.18 -92.70 -0.39 8.80 16 39 H 0.16 1.05 6.39 -2.91 -0.02 1.03 16 40 H 0.19 -1.15 7.13 -2.91 -0.02 -1.17 16 41 H 0.15 1.99 7.85 -2.91 -0.02 1.97 16 42 H 0.14 2.70 7.64 -2.91 -0.02 2.68 16 Total: -1.00 -74.54 354.21 1.80 -72.74 By element: Atomic # 1 Polarization: 2.85 SS G_CDS: -0.03 Total: 2.83 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 5.79 Total: 6.91 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -7.30 Total: -86.61 kcal Atomic # 8 Polarization: -40.01 SS G_CDS: 1.32 Total: -38.69 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -74.54 1.80 -72.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412413539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.794 kcal (2) G-P(sol) polarization free energy of solvation -74.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.737 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds