Wall clock time and date at job start Tue Mar 31 2020 16:23:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50698 * 109.46860 * 2 1 4 4 N 1.31132 * 126.55231 * 89.97654 * 3 2 1 5 5 C 1.34484 * 105.61843 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.28894 * 180.26504 * 5 4 3 7 7 O 1.42896 * 109.47277 * 269.70660 * 6 5 4 8 8 C 1.35706 * 117.00391 * 180.02562 * 7 6 5 9 9 C 1.39009 * 119.90955 * 359.72997 * 8 7 6 10 10 C 1.37700 * 120.08649 * 179.72103 * 9 8 7 11 11 C 1.39731 * 119.91205 * 0.57295 * 10 9 8 12 12 C 1.47597 * 120.08965 * 179.67795 * 11 10 9 13 13 O 1.21592 * 120.00098 * 180.02562 * 12 11 10 14 14 N 1.34773 * 119.99894 * 0.02562 * 12 11 10 15 15 C 1.46503 * 120.00245 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47355 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99629 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00050 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99941 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00328 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47019 * 89.99888 * 20 18 16 22 22 H 1.48496 * 109.47548 * 210.00304 * 20 18 16 23 23 H 1.48501 * 109.47076 * 330.00755 * 20 18 16 24 24 C 1.39741 * 119.82595 * 359.69982 * 11 10 9 25 25 C 1.37705 * 119.90937 * 0.02562 * 24 11 10 26 26 N 1.29954 * 107.42396 * 359.97438 * 5 4 3 27 27 O 1.21294 * 110.24985 * 0.02562 * 26 5 4 28 28 H 1.08999 * 109.46886 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47219 * 299.99828 * 1 2 3 30 30 H 1.08997 * 109.46831 * 60.00377 * 1 2 3 31 31 H 1.08994 * 109.47219 * 240.00172 * 2 1 3 32 32 H 1.09000 * 109.46572 * 120.00063 * 2 1 3 33 33 H 1.08999 * 109.47253 * 29.70826 * 6 5 4 34 34 H 1.09011 * 109.46848 * 149.70700 * 6 5 4 35 35 H 1.07998 * 119.94833 * 0.02562 * 9 8 7 36 36 H 1.07997 * 120.04034 * 180.27162 * 10 9 8 37 37 H 0.96999 * 120.00398 * 0.02562 * 14 12 11 38 38 H 1.09003 * 109.47261 * 300.00082 * 15 14 12 39 39 H 1.09002 * 109.47090 * 60.00003 * 15 14 12 40 40 H 0.97001 * 120.00120 * 179.97438 * 19 18 16 41 41 H 1.07992 * 120.04830 * 179.97438 * 24 11 10 42 42 H 1.07995 * 119.95440 * 180.02562 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2922 2.1573 1.0534 5 6 2.7105 3.3417 0.5729 6 6 3.1376 4.5346 1.3887 7 8 2.0042 5.3658 1.6465 8 6 2.2181 6.4911 2.3743 9 6 3.4957 6.7853 2.8363 10 6 3.7180 7.9290 3.5703 11 6 2.6549 8.7881 3.8607 12 6 2.8874 10.0114 4.6532 13 8 1.9611 10.7576 4.9054 14 7 4.1264 10.3013 5.0973 15 6 4.3574 11.5158 5.8834 16 6 5.8156 11.6054 6.2528 17 1 6.5017 10.8345 5.9342 18 6 6.2739 12.6714 6.9974 19 7 5.4383 13.6099 7.3857 20 14 8.0813 12.7822 7.4560 21 1 8.8154 13.5245 6.3998 22 1 8.2208 13.4961 8.7506 23 1 8.6448 11.4140 7.5818 24 6 1.3710 8.4859 3.3993 25 6 1.1580 7.3431 2.6611 26 7 2.6847 3.2664 -0.7242 27 8 2.2978 2.1712 -1.0736 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.5618 4.1954 2.3338 34 1 3.8869 5.1026 0.8371 35 1 4.3159 6.1185 2.6150 36 1 4.7117 8.1591 3.9251 37 1 4.8655 9.7062 4.8958 38 1 4.0780 12.3889 5.2937 39 1 3.7538 11.4817 6.7904 40 1 5.7607 14.3597 7.9099 41 1 0.5467 9.1471 3.6221 42 1 0.1661 7.1090 2.3038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000427609966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:28 Heat of formation + Delta-G solvation = 16.373041 kcal Electronic energy + Delta-G solvation = -25941.080039 eV Core-core repulsion = 21889.959250 eV Total energy + Delta-G solvation = -4051.120789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.16396 -40.51021 -39.03641 -37.18844 -36.43632 -35.19581 -34.27153 -32.47519 -31.82660 -31.15247 -30.38857 -28.68910 -27.07175 -25.51895 -24.13120 -23.63241 -22.91200 -22.16482 -21.35494 -19.85562 -18.94241 -18.39659 -18.08918 -17.62345 -16.58202 -16.28958 -15.92056 -15.63241 -15.23415 -14.99294 -14.87348 -14.48127 -14.36683 -13.95142 -13.70495 -13.62929 -13.36123 -13.16002 -12.88572 -12.76241 -12.44736 -12.25930 -12.14617 -11.95146 -11.91029 -11.83674 -11.58136 -11.22383 -11.03545 -10.97546 -10.88862 -10.50217 -10.33096 -9.41380 -9.18945 -9.15095 -8.75295 -8.39392 -7.86835 -6.17502 -4.24659 0.57591 0.98180 1.26318 1.45960 2.24135 2.66081 3.20683 3.23700 3.25435 3.29758 3.32052 3.51114 4.04598 4.12511 4.20118 4.35461 4.35912 4.39086 4.44581 4.68936 4.69671 4.72191 4.86670 5.09526 5.16129 5.18699 5.18954 5.19368 5.21418 5.39514 5.43604 5.51585 5.57161 5.87798 6.02588 6.18785 6.43818 6.54414 7.05169 7.30220 7.39666 7.50717 7.60746 7.64888 7.95547 8.59019 8.75893 9.05428 9.41800 10.92692 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024076 B = 0.001748 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.682648 B =16010.616096 C =16812.344346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.030 4.030 3 C 0.182 3.818 4 N -0.467 5.467 5 C 0.168 3.832 6 C 0.154 3.846 7 O -0.308 6.308 8 C 0.142 3.858 9 C -0.215 4.215 10 C -0.046 4.046 11 C -0.155 4.155 12 C 0.541 3.459 13 O -0.554 6.554 14 N -0.706 5.706 15 C 0.248 3.752 16 C -0.545 4.545 17 H 0.063 0.937 18 C 0.064 3.936 19 N -0.885 5.885 20 Si 0.904 3.096 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.273 1.273 24 C -0.024 4.024 25 C -0.156 4.156 26 N -0.360 5.360 27 O 0.088 5.912 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.064 0.936 31 H 0.104 0.896 32 H 0.112 0.888 33 H 0.100 0.900 34 H 0.095 0.905 35 H 0.132 0.868 36 H 0.134 0.866 37 H 0.389 0.611 38 H 0.029 0.971 39 H 0.029 0.971 40 H 0.266 0.734 41 H 0.145 0.855 42 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.579 -29.550 -16.537 34.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.069 4.069 3 C -0.038 4.038 4 N -0.200 5.200 5 C -0.105 4.105 6 C 0.077 3.923 7 O -0.221 6.221 8 C 0.097 3.903 9 C -0.234 4.234 10 C -0.065 4.065 11 C -0.158 4.158 12 C 0.327 3.673 13 O -0.434 6.434 14 N -0.354 5.354 15 C 0.128 3.872 16 C -0.583 4.583 17 H 0.081 0.919 18 C -0.140 4.140 19 N -0.522 5.522 20 Si 0.731 3.269 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.198 1.198 24 C -0.043 4.043 25 C -0.174 4.174 26 N -0.065 5.065 27 O 0.025 5.975 28 H 0.098 0.902 29 H 0.085 0.915 30 H 0.083 0.917 31 H 0.123 0.877 32 H 0.130 0.870 33 H 0.118 0.882 34 H 0.113 0.887 35 H 0.150 0.850 36 H 0.152 0.848 37 H 0.223 0.777 38 H 0.047 0.953 39 H 0.047 0.953 40 H 0.076 0.924 41 H 0.162 0.838 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -7.107 -28.061 -16.347 33.244 hybrid contribution 1.583 -0.263 0.179 1.614 sum -5.524 -28.324 -16.169 33.079 Atomic orbital electron populations 1.21814 0.92236 1.03685 1.03420 1.20262 0.97458 0.82978 1.06203 1.28977 0.95876 0.98568 0.80391 1.71892 1.17049 1.02211 1.28861 1.25158 1.01912 0.95315 0.88084 1.20601 0.87599 0.85507 0.98557 1.86003 1.34559 1.32776 1.68747 1.19114 0.94123 0.85663 0.91382 1.21120 0.95832 1.00876 1.05581 1.21189 0.98850 0.92195 0.94234 1.20241 0.94482 0.97568 1.03507 1.18132 0.83905 0.85018 0.80227 1.90737 1.42664 1.50893 1.59108 1.46416 1.08077 1.27316 1.53553 1.19158 0.96506 0.80987 0.90550 1.21212 0.93066 1.08620 1.35396 0.91906 1.24946 0.98390 0.95234 0.95393 1.69974 1.34751 1.11072 1.36378 0.86407 0.84199 0.78267 0.77985 1.20455 1.20978 1.19764 1.21125 0.96699 0.94394 0.92061 1.20354 0.98207 0.95043 1.03811 1.74695 1.16607 0.99729 1.15473 1.85323 1.59008 1.17327 1.35861 0.90205 0.91495 0.91733 0.87727 0.86979 0.88181 0.88662 0.85036 0.84809 0.77700 0.95297 0.95275 0.92415 0.83755 0.84716 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.37 9.90 37.16 0.37 0.00 16 2 C -0.03 -0.08 6.56 -27.88 -0.18 -0.26 16 3 C 0.18 1.30 7.77 -13.06 -0.10 1.20 16 4 N -0.47 -4.60 11.55 -9.87 -0.11 -4.72 16 5 C 0.17 1.77 7.85 -156.38 -1.23 0.55 16 6 C 0.15 1.45 5.36 36.01 0.19 1.64 16 7 O -0.31 -3.67 10.11 -18.82 -0.19 -3.86 16 8 C 0.14 1.75 6.70 -39.01 -0.26 1.49 16 9 C -0.22 -2.46 9.01 -39.49 -0.36 -2.81 16 10 C -0.05 -0.61 9.53 -39.22 -0.37 -0.98 16 11 C -0.15 -2.52 5.87 -104.96 -0.62 -3.14 16 12 C 0.54 11.35 7.76 -12.44 -0.10 11.26 16 13 O -0.55 -13.68 16.34 5.28 0.09 -13.60 16 14 N -0.71 -15.19 5.50 -62.51 -0.34 -15.54 16 15 C 0.25 6.64 5.43 -5.19 -0.03 6.61 16 16 C -0.54 -14.79 9.28 -34.44 -0.32 -15.11 16 17 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 18 C 0.06 1.78 5.46 -17.82 -0.10 1.68 16 19 N -0.88 -26.06 13.29 55.43 0.74 -25.32 16 20 Si 0.90 20.81 29.54 -169.99 -5.02 15.79 16 21 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 22 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 23 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 24 C -0.02 -0.35 9.58 -39.21 -0.38 -0.73 16 25 C -0.16 -1.98 9.97 -39.50 -0.39 -2.37 16 26 N -0.36 -3.91 12.16 30.90 0.38 -3.53 16 27 O 0.09 0.77 11.31 18.10 0.20 0.97 16 28 H 0.08 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.10 0.02 8.14 -51.93 -0.42 -0.40 16 32 H 0.11 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.10 0.77 7.64 -51.93 -0.40 0.38 16 34 H 0.10 0.74 7.66 -51.92 -0.40 0.35 16 35 H 0.13 1.10 6.28 -52.49 -0.33 0.77 16 36 H 0.13 1.57 6.39 -52.49 -0.34 1.23 16 37 H 0.39 7.12 6.34 -40.82 -0.26 6.86 16 38 H 0.03 0.85 8.14 -51.93 -0.42 0.43 16 39 H 0.03 0.86 8.14 -51.93 -0.42 0.43 16 40 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 41 H 0.14 2.10 7.64 -52.49 -0.40 1.70 16 42 H 0.13 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 370.04 15.07 5.58 5.58 Total: -1.00 -35.35 370.04 -7.59 -42.95 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -5.04 Total: 2.24 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: -3.87 Total: -0.97 kcal Atomic # 7 Polarization: -49.76 SS G_CDS: 0.65 Total: -49.11 kcal Atomic # 8 Polarization: -16.58 SS G_CDS: 0.10 Total: -16.48 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -35.35 -7.59 -42.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427609966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.322 kcal (2) G-P(sol) polarization free energy of solvation -35.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.594 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.949 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds