Wall clock time and date at job start Tue Mar 31 2020 16:23:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50698 * 109.46860 * 2 1 4 4 N 1.31132 * 126.55231 * 89.97654 * 3 2 1 5 5 C 1.34484 * 105.61843 * 180.02562 * 4 3 2 6 6 C 1.50700 * 126.28894 * 180.26504 * 5 4 3 7 7 O 1.42896 * 109.47277 * 269.70660 * 6 5 4 8 8 C 1.35706 * 117.00391 * 180.02562 * 7 6 5 9 9 C 1.39009 * 119.90955 * 359.72997 * 8 7 6 10 10 C 1.37700 * 120.08649 * 179.72103 * 9 8 7 11 11 C 1.39731 * 119.91205 * 0.57295 * 10 9 8 12 12 C 1.47597 * 120.08965 * 179.67795 * 11 10 9 13 13 O 1.21592 * 120.00098 * 180.02562 * 12 11 10 14 14 N 1.34773 * 119.99894 * 0.02562 * 12 11 10 15 15 C 1.46503 * 120.00245 * 179.97438 * 14 12 11 16 16 C 1.50699 * 109.47355 * 180.02562 * 15 14 12 17 17 H 1.07998 * 119.99629 * 359.97438 * 16 15 14 18 18 C 1.37876 * 120.00050 * 179.97438 * 16 15 14 19 19 N 1.31517 * 119.99941 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 120.00328 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47019 * 89.99888 * 20 18 16 22 22 H 1.48496 * 109.47548 * 210.00304 * 20 18 16 23 23 H 1.48501 * 109.47076 * 330.00755 * 20 18 16 24 24 C 1.39741 * 119.82595 * 359.69982 * 11 10 9 25 25 C 1.37705 * 119.90937 * 0.02562 * 24 11 10 26 26 N 1.29954 * 107.42396 * 359.97438 * 5 4 3 27 27 O 1.21294 * 110.24985 * 0.02562 * 26 5 4 28 28 H 1.08999 * 109.46886 * 179.97438 * 1 2 3 29 29 H 1.08994 * 109.47219 * 299.99828 * 1 2 3 30 30 H 1.08997 * 109.46831 * 60.00377 * 1 2 3 31 31 H 1.08994 * 109.47219 * 240.00172 * 2 1 3 32 32 H 1.09000 * 109.46572 * 120.00063 * 2 1 3 33 33 H 1.08999 * 109.47253 * 29.70826 * 6 5 4 34 34 H 1.09011 * 109.46848 * 149.70700 * 6 5 4 35 35 H 1.07998 * 119.94833 * 0.02562 * 9 8 7 36 36 H 1.07997 * 120.04034 * 180.27162 * 10 9 8 37 37 H 0.96999 * 120.00398 * 0.02562 * 14 12 11 38 38 H 1.09003 * 109.47261 * 300.00082 * 15 14 12 39 39 H 1.09002 * 109.47090 * 60.00003 * 15 14 12 40 40 H 0.97001 * 120.00120 * 179.97438 * 19 18 16 41 41 H 1.07992 * 120.04830 * 179.97438 * 24 11 10 42 42 H 1.07995 * 119.95440 * 180.02562 * 25 24 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2922 2.1573 1.0534 5 6 2.7105 3.3417 0.5729 6 6 3.1376 4.5346 1.3887 7 8 2.0042 5.3658 1.6465 8 6 2.2181 6.4911 2.3743 9 6 3.4957 6.7853 2.8363 10 6 3.7180 7.9290 3.5703 11 6 2.6549 8.7881 3.8607 12 6 2.8874 10.0114 4.6532 13 8 1.9611 10.7576 4.9054 14 7 4.1264 10.3013 5.0973 15 6 4.3574 11.5158 5.8834 16 6 5.8156 11.6054 6.2528 17 1 6.5017 10.8345 5.9342 18 6 6.2739 12.6714 6.9974 19 7 5.4383 13.6099 7.3857 20 14 8.0813 12.7822 7.4560 21 1 8.8154 13.5245 6.3998 22 1 8.2208 13.4961 8.7506 23 1 8.6448 11.4140 7.5818 24 6 1.3710 8.4859 3.3993 25 6 1.1580 7.3431 2.6611 26 7 2.6847 3.2664 -0.7242 27 8 2.2978 2.1712 -1.0736 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.5618 4.1954 2.3338 34 1 3.8869 5.1026 0.8371 35 1 4.3159 6.1185 2.6150 36 1 4.7117 8.1591 3.9251 37 1 4.8655 9.7062 4.8958 38 1 4.0780 12.3889 5.2937 39 1 3.7538 11.4817 6.7904 40 1 5.7607 14.3597 7.9099 41 1 0.5467 9.1471 3.6221 42 1 0.1661 7.1090 2.3038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000427609966.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:23:27 Heat of formation + Delta-G solvation = -9.623116 kcal Electronic energy + Delta-G solvation = -25942.207317 eV Core-core repulsion = 21889.959250 eV Total energy + Delta-G solvation = -4052.248067 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -46.83104 -41.56973 -40.50526 -38.34112 -37.11327 -36.22973 -35.65834 -34.44709 -32.49892 -32.12163 -31.52643 -29.72102 -28.83347 -25.93943 -25.39862 -24.68001 -24.11352 -23.38491 -22.08747 -21.46924 -19.83037 -19.45583 -18.98066 -18.73491 -17.83776 -17.54155 -17.11153 -16.79874 -16.28593 -16.20082 -16.09177 -15.87050 -15.35136 -15.03513 -14.92957 -14.44359 -14.18585 -14.11985 -13.98626 -13.95807 -13.70794 -13.48852 -13.41168 -12.93116 -12.81825 -12.72523 -12.68651 -12.32906 -12.23114 -12.17964 -11.98728 -11.97051 -11.49747 -11.14406 -10.95251 -10.81471 -10.17337 -9.95492 -9.37183 -8.29432 -6.46488 -0.18545 -0.05031 0.24847 0.78071 1.43497 1.46143 1.57278 1.73266 1.84711 1.94130 2.29890 2.52498 2.62015 2.79266 2.83623 3.05737 3.56373 3.71257 3.79023 3.84353 3.91768 4.09358 4.16218 4.20638 4.26515 4.33047 4.36428 4.49087 4.73610 4.81369 4.88085 4.96144 4.99216 5.06235 5.08203 5.14322 5.21892 5.34155 5.34384 5.43341 5.49639 5.67308 5.82665 6.11945 6.63052 6.84078 6.97375 7.21451 7.40281 8.82877 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.024076 B = 0.001748 C = 0.001665 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.682648 B =16010.616096 C =16812.344346 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.029 4.029 3 C 0.195 3.805 4 N -0.495 5.495 5 C 0.155 3.845 6 C 0.147 3.853 7 O -0.318 6.318 8 C 0.153 3.847 9 C -0.204 4.204 10 C -0.038 4.038 11 C -0.181 4.181 12 C 0.540 3.460 13 O -0.602 6.602 14 N -0.700 5.700 15 C 0.264 3.736 16 C -0.557 4.557 17 H 0.086 0.914 18 C 0.004 3.996 19 N -0.930 5.930 20 Si 0.987 3.013 21 H -0.271 1.271 22 H -0.284 1.284 23 H -0.254 1.254 24 C -0.029 4.029 25 C -0.157 4.157 26 N -0.383 5.383 27 O 0.087 5.913 28 H 0.102 0.898 29 H 0.047 0.953 30 H 0.059 0.941 31 H 0.134 0.866 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.114 0.886 35 H 0.170 0.830 36 H 0.151 0.849 37 H 0.407 0.593 38 H -0.010 1.010 39 H -0.010 1.010 40 H 0.269 0.731 41 H 0.135 0.865 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.493 -33.101 -17.789 37.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.068 4.068 3 C -0.025 4.025 4 N -0.228 5.228 5 C -0.118 4.118 6 C 0.071 3.929 7 O -0.231 6.231 8 C 0.108 3.892 9 C -0.222 4.222 10 C -0.057 4.057 11 C -0.185 4.185 12 C 0.329 3.671 13 O -0.486 6.486 14 N -0.349 5.349 15 C 0.142 3.858 16 C -0.595 4.595 17 H 0.104 0.896 18 C -0.196 4.196 19 N -0.569 5.569 20 Si 0.809 3.191 21 H -0.196 1.196 22 H -0.210 1.210 23 H -0.178 1.178 24 C -0.048 4.048 25 C -0.175 4.175 26 N -0.090 5.090 27 O 0.024 5.976 28 H 0.121 0.879 29 H 0.067 0.933 30 H 0.078 0.922 31 H 0.152 0.848 32 H 0.144 0.856 33 H 0.138 0.862 34 H 0.132 0.868 35 H 0.188 0.812 36 H 0.169 0.831 37 H 0.244 0.756 38 H 0.008 0.992 39 H 0.008 0.992 40 H 0.078 0.922 41 H 0.152 0.848 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -5.011 -31.679 -17.630 36.599 hybrid contribution 0.805 0.649 0.453 1.129 sum -4.207 -31.030 -17.177 35.716 Atomic orbital electron populations 1.21820 0.92046 1.04844 1.02271 1.20622 0.97353 0.80451 1.08326 1.29883 0.93782 0.99461 0.79358 1.71905 1.18424 1.02537 1.29960 1.25420 1.02173 0.95943 0.88222 1.20918 0.87033 0.85187 0.99743 1.85994 1.36181 1.32602 1.68279 1.19212 0.94265 0.85417 0.90352 1.21433 0.96563 1.00305 1.03900 1.21339 0.98559 0.91966 0.93801 1.19866 0.96379 0.96709 1.05510 1.18877 0.82762 0.85946 0.79507 1.90697 1.43991 1.52964 1.60949 1.46104 1.09310 1.26201 1.53319 1.18619 0.96394 0.81858 0.88941 1.21607 0.93137 1.09382 1.35391 0.89620 1.26077 1.03881 0.94577 0.95020 1.70143 1.37535 1.11948 1.37256 0.85130 0.77354 0.79085 0.77481 1.19605 1.20987 1.17789 1.21073 0.95948 0.95154 0.92631 1.20451 0.99463 0.94329 1.03263 1.74674 1.17667 1.00825 1.15872 1.85289 1.59018 1.17067 1.36254 0.87897 0.93348 0.92169 0.84752 0.85642 0.86228 0.86833 0.81239 0.83129 0.75559 0.99220 0.99167 0.92224 0.84762 0.83095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.42 9.90 71.98 0.71 0.30 16 2 C -0.03 -0.07 6.56 29.85 0.20 0.13 16 3 C 0.19 2.43 7.77 88.38 0.69 3.11 16 4 N -0.49 -8.95 11.55 -303.20 -3.50 -12.45 16 5 C 0.15 3.00 7.85 138.46 1.09 4.09 16 6 C 0.15 2.34 5.36 71.24 0.38 2.72 16 7 O -0.32 -6.76 10.11 -90.26 -0.91 -7.67 16 8 C 0.15 3.38 6.70 22.64 0.15 3.53 16 9 C -0.20 -3.95 9.01 22.33 0.20 -3.75 16 10 C -0.04 -0.93 9.53 22.50 0.21 -0.71 16 11 C -0.18 -5.92 5.87 -20.08 -0.12 -6.04 16 12 C 0.54 23.60 7.76 86.71 0.67 24.27 16 13 O -0.60 -31.77 16.34 -4.01 -0.07 -31.83 16 14 N -0.70 -30.96 5.50 -469.93 -2.58 -33.55 16 15 C 0.26 14.85 5.43 85.63 0.46 15.32 16 16 C -0.56 -30.51 9.28 25.60 0.24 -30.27 16 17 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 18 C 0.00 0.23 5.46 84.65 0.46 0.69 16 19 N -0.93 -56.46 13.29 21.45 0.28 -56.18 16 20 Si 0.99 42.27 29.54 68.60 2.03 44.30 16 21 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 H -0.25 -10.07 7.11 99.48 0.71 -9.36 16 24 C -0.03 -0.86 9.58 22.51 0.22 -0.64 16 25 C -0.16 -3.78 9.97 22.33 0.22 -3.56 16 26 N -0.38 -7.82 12.16 -60.33 -0.73 -8.56 16 27 O 0.09 1.39 11.31 74.84 0.85 2.23 16 28 H 0.10 -0.16 8.14 -2.39 -0.02 -0.18 16 29 H 0.05 0.32 8.14 -2.39 -0.02 0.30 16 30 H 0.06 0.23 8.14 -2.39 -0.02 0.21 16 31 H 0.13 -0.44 8.14 -2.39 -0.02 -0.46 16 32 H 0.13 0.03 8.14 -2.39 -0.02 0.01 16 33 H 0.12 1.42 7.64 -2.39 -0.02 1.40 16 34 H 0.11 1.38 7.66 -2.38 -0.02 1.36 16 35 H 0.17 1.99 6.28 -2.91 -0.02 1.97 16 36 H 0.15 3.11 6.39 -2.91 -0.02 3.09 16 37 H 0.41 14.67 6.34 -92.71 -0.59 14.09 16 38 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 39 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 40 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 41 H 0.13 4.15 7.64 -2.91 -0.02 4.13 16 42 H 0.15 3.09 8.06 -2.91 -0.02 3.06 16 Total: -1.00 -81.09 370.04 1.63 -79.46 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.48 Total: 15.06 kcal Atomic # 6 Polarization: 3.39 SS G_CDS: 5.79 Total: 9.18 kcal Atomic # 7 Polarization: -104.20 SS G_CDS: -6.53 Total: -110.73 kcal Atomic # 8 Polarization: -37.14 SS G_CDS: -0.13 Total: -37.27 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -81.09 1.63 -79.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000427609966.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.837 kcal (2) G-P(sol) polarization free energy of solvation -81.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.633 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds