Wall clock time and date at job start Tue Mar 31 2020 16:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47413 * 2 1 4 4 H 1.09007 * 109.46584 * 305.00341 * 3 2 1 5 5 C 1.50697 * 109.47234 * 185.00385 * 3 2 1 6 6 H 1.08004 * 119.99629 * 239.99637 * 5 3 2 7 7 C 1.37875 * 120.00119 * 59.99771 * 5 3 2 8 8 N 1.31510 * 120.00367 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99834 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47359 * 59.99767 * 9 7 5 11 11 H 1.48502 * 109.47225 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47396 * 299.99719 * 9 7 5 13 13 N 1.46497 * 109.47171 * 65.00035 * 3 2 1 14 14 C 1.34775 * 120.00045 * 275.00328 * 13 3 2 15 15 O 1.21373 * 119.99928 * 359.97438 * 14 13 3 16 16 C 1.49326 * 120.00232 * 180.02562 * 14 13 3 17 17 O 1.21392 * 120.00058 * 359.97438 * 16 14 13 18 18 N 1.34775 * 120.00232 * 180.02562 * 16 14 13 19 19 C 1.39838 * 120.00195 * 185.27047 * 18 16 14 20 20 C 1.38959 * 120.16611 * 213.22199 * 19 18 16 21 21 C 1.38569 * 120.37818 * 180.11864 * 20 19 18 22 22 C 1.39406 * 120.02655 * 359.77271 * 21 20 19 23 23 C 1.39256 * 119.03365 * 0.17441 * 22 21 20 24 24 C 1.37587 * 121.03143 * 359.96649 * 23 22 21 25 25 C 1.51149 * 106.18940 * 179.97438 * 23 22 21 26 26 C 1.51385 * 104.21412 * 0.11735 * 25 23 22 27 27 O 1.21289 * 126.43759 * 179.97438 * 26 25 23 28 28 N 1.34365 * 107.13195 * 359.92592 * 26 25 23 29 29 H 1.08998 * 109.47084 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46662 * 299.99908 * 1 2 3 31 31 H 1.08993 * 109.47426 * 60.00058 * 1 2 3 32 32 H 1.09004 * 109.46930 * 239.99617 * 2 1 3 33 33 H 1.09003 * 109.47034 * 120.00321 * 2 1 3 34 34 H 0.96996 * 120.00188 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00131 * 95.00271 * 13 3 2 36 36 H 0.97004 * 120.00114 * 5.27136 * 18 16 14 37 37 H 1.08000 * 119.85549 * 0.02562 * 20 19 18 38 38 H 1.08000 * 120.08911 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.06934 * 179.97438 * 24 23 22 40 40 H 1.09001 * 110.50689 * 241.39211 * 25 23 22 41 41 H 1.09000 * 110.50156 * 118.83579 * 25 23 22 42 42 H 0.96999 * 123.88564 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8783 -1.2281 8 7 3.4062 0.3365 -2.1729 9 14 6.0049 0.8799 -1.3812 10 1 6.5966 0.1452 -0.2344 11 1 6.3978 0.2155 -2.6499 12 1 6.5005 2.2798 -1.3810 13 7 1.6525 2.0975 1.2518 14 6 0.4353 2.6644 1.3670 15 8 -0.3397 2.6327 0.4334 16 6 0.0404 3.3325 2.6427 17 8 0.8157 3.3647 3.5763 18 7 -1.1770 3.8990 2.7581 19 6 -1.5067 4.6195 3.9103 20 6 -2.8125 4.6177 4.3853 21 6 -3.1446 5.3321 5.5253 22 6 -2.1655 6.0545 6.2056 23 6 -0.8604 6.0474 5.7199 24 6 -0.5292 5.3411 4.5866 25 6 -0.0547 6.9102 6.6639 26 6 -1.0610 7.3711 7.6967 27 8 -0.8389 8.0894 8.6484 28 7 -2.2467 6.8358 7.3606 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8293 -0.0620 -2.9495 35 1 2.2721 2.1231 1.9977 36 1 -1.8247 3.8069 2.0418 37 1 -3.5739 4.0577 3.8628 38 1 -4.1609 5.3271 5.8906 39 1 0.4878 5.3467 4.2234 40 1 0.3674 7.7644 6.1343 41 1 0.7356 6.3257 7.1349 42 1 -3.0649 6.9754 7.8625 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000439560495.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:27 Heat of formation + Delta-G solvation = -67.712703 kcal Electronic energy + Delta-G solvation = -27291.011293 eV Core-core repulsion = 23236.244272 eV Total energy + Delta-G solvation = -4054.767020 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.75801 -40.63737 -38.96634 -38.06836 -36.39264 -35.38665 -33.98296 -32.62176 -32.45030 -31.05033 -29.28042 -28.28385 -27.29893 -24.88883 -23.25555 -22.65124 -21.80289 -21.51138 -20.35820 -19.55074 -18.74234 -18.15084 -17.54350 -16.80558 -16.41299 -16.31429 -15.82200 -15.67833 -15.18224 -15.04198 -14.45292 -14.40264 -14.20021 -13.80115 -13.47944 -13.44655 -13.30030 -13.23786 -12.87124 -12.78649 -12.17909 -11.77319 -11.65859 -11.46061 -11.34910 -11.18691 -11.02150 -10.88974 -10.56390 -10.41437 -10.31351 -9.97725 -9.75151 -9.25830 -9.19490 -9.08644 -8.60703 -8.10331 -7.93697 -6.21295 -4.31331 0.69853 0.96986 1.70980 2.15781 2.54535 2.66475 3.22571 3.27808 3.29723 3.36141 3.64566 3.75099 3.98165 4.14241 4.30416 4.49841 4.76291 4.87426 5.00420 5.02001 5.05547 5.11038 5.30000 5.56678 5.62441 5.74053 5.97507 6.04540 6.26485 6.31025 6.32749 6.40735 6.49973 6.66880 6.88923 6.93518 7.06823 7.10888 7.21907 7.43516 7.58344 7.60670 7.72276 7.82092 8.03559 8.37408 8.55955 8.80335 9.35687 10.84011 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.020356 B = 0.002399 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.183318 B =11670.897439 C =12815.849449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.130 4.130 3 C 0.268 3.732 4 H 0.055 0.945 5 C -0.538 4.538 6 H 0.064 0.936 7 C 0.069 3.931 8 N -0.882 5.882 9 Si 0.904 3.096 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.275 1.275 13 N -0.666 5.666 14 C 0.494 3.506 15 O -0.529 6.529 16 C 0.507 3.493 17 O -0.505 6.505 18 N -0.649 5.649 19 C 0.136 3.864 20 C -0.109 4.109 21 C -0.115 4.115 22 C 0.118 3.882 23 C -0.120 4.120 24 C -0.069 4.069 25 C -0.115 4.115 26 C 0.530 3.470 27 O -0.509 6.509 28 N -0.658 5.658 29 H 0.026 0.974 30 H 0.034 0.966 31 H 0.052 0.948 32 H 0.104 0.896 33 H 0.035 0.965 34 H 0.267 0.733 35 H 0.402 0.598 36 H 0.425 0.575 37 H 0.138 0.862 38 H 0.132 0.868 39 H 0.145 0.855 40 H 0.125 0.875 41 H 0.126 0.874 42 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.802 8.919 13.240 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.168 4.168 3 C 0.167 3.833 4 H 0.073 0.927 5 C -0.577 4.577 6 H 0.082 0.918 7 C -0.135 4.135 8 N -0.519 5.519 9 Si 0.731 3.269 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.201 1.201 13 N -0.315 5.315 14 C 0.272 3.728 15 O -0.407 6.407 16 C 0.290 3.710 17 O -0.378 6.378 18 N -0.297 5.297 19 C 0.041 3.959 20 C -0.130 4.130 21 C -0.136 4.136 22 C 0.021 3.979 23 C -0.123 4.123 24 C -0.089 4.089 25 C -0.155 4.155 26 C 0.318 3.682 27 O -0.384 6.384 28 N -0.302 5.302 29 H 0.045 0.955 30 H 0.054 0.946 31 H 0.071 0.929 32 H 0.122 0.878 33 H 0.054 0.946 34 H 0.077 0.923 35 H 0.236 0.764 36 H 0.263 0.737 37 H 0.156 0.844 38 H 0.150 0.850 39 H 0.162 0.838 40 H 0.143 0.857 41 H 0.144 0.856 42 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -12.438 9.192 13.490 20.522 hybrid contribution 0.418 -0.113 0.120 0.449 sum -12.020 9.079 13.609 20.301 Atomic orbital electron populations 1.21855 0.98303 0.98456 1.00997 1.21972 0.92653 0.99385 1.02825 1.19022 0.94800 0.89390 0.80048 0.92705 1.21160 0.90281 1.39621 1.06606 0.91805 1.24864 0.98839 0.94560 0.95225 1.69863 1.35400 1.37263 1.09354 0.86466 0.84485 0.78435 0.77517 1.20047 1.21086 1.20083 1.46476 1.13417 1.52347 1.19262 1.19559 0.84598 0.81586 0.87010 1.90754 1.51194 1.59357 1.39425 1.21051 0.81717 0.78755 0.89462 1.90746 1.50688 1.56692 1.39672 1.43209 1.16547 1.50990 1.18925 1.17522 0.93720 0.95067 0.89605 1.20814 0.95372 1.00573 0.96257 1.20274 0.98228 0.99205 0.95925 1.18205 0.95291 0.95799 0.88569 1.19625 0.93500 1.01712 0.97459 1.20247 1.00580 0.94089 0.93991 1.21067 0.98407 1.00968 0.95010 1.20607 0.83705 0.78601 0.85292 1.90823 1.81465 1.36277 1.29803 1.43710 1.12678 1.47676 1.26103 0.95451 0.94648 0.92915 0.87811 0.94637 0.92346 0.76367 0.73706 0.84421 0.85003 0.83774 0.85701 0.85584 0.75000 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.84 8.51 37.16 0.32 -2.52 16 2 C -0.13 -2.96 5.45 -26.73 -0.15 -3.11 16 3 C 0.27 6.34 2.24 -69.09 -0.15 6.19 16 4 H 0.06 1.47 7.58 -51.93 -0.39 1.08 16 5 C -0.54 -13.63 8.73 -34.44 -0.30 -13.93 16 6 H 0.06 1.56 7.74 -52.48 -0.41 1.16 16 7 C 0.07 1.77 5.29 -17.82 -0.09 1.68 16 8 N -0.88 -23.57 11.29 55.43 0.63 -22.95 16 9 Si 0.90 20.00 29.54 -169.99 -5.02 14.98 16 10 H -0.28 -6.02 7.11 56.52 0.40 -5.62 16 11 H -0.29 -6.30 7.11 56.52 0.40 -5.90 16 12 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 13 N -0.67 -13.27 5.01 -55.40 -0.28 -13.55 16 14 C 0.49 8.99 6.45 -11.64 -0.08 8.91 16 15 O -0.53 -10.47 13.62 5.48 0.07 -10.40 16 16 C 0.51 7.71 7.63 -11.64 -0.09 7.62 16 17 O -0.50 -8.29 14.16 5.46 0.08 -8.21 16 18 N -0.65 -7.70 5.33 -10.24 -0.05 -7.76 16 19 C 0.14 1.46 6.29 -83.64 -0.53 0.93 16 20 C -0.11 -0.88 9.96 -39.19 -0.39 -1.27 16 21 C -0.11 -0.83 10.11 -39.02 -0.39 -1.22 16 22 C 0.12 1.00 7.12 -83.47 -0.59 0.41 16 23 C -0.12 -1.14 6.35 -104.26 -0.66 -1.81 16 24 C -0.07 -0.76 8.65 -39.52 -0.34 -1.10 16 25 C -0.12 -0.96 6.87 -28.48 -0.20 -1.15 16 26 C 0.53 5.24 8.71 -10.83 -0.09 5.15 16 27 O -0.51 -6.73 18.03 5.55 0.10 -6.63 16 28 N -0.66 -5.16 5.89 -9.57 -0.06 -5.22 16 29 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.03 0.69 5.65 -51.93 -0.29 0.40 16 31 H 0.05 1.13 7.85 -51.93 -0.41 0.72 16 32 H 0.10 2.63 5.95 -51.93 -0.31 2.32 16 33 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 35 H 0.40 7.51 8.01 -40.82 -0.33 7.18 16 36 H 0.42 4.36 8.30 -40.82 -0.34 4.03 16 37 H 0.14 0.81 8.06 -52.49 -0.42 0.39 16 38 H 0.13 0.60 8.06 -52.49 -0.42 0.18 16 39 H 0.14 1.77 6.42 -52.49 -0.34 1.43 16 40 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.13 0.93 8.14 -51.93 -0.42 0.51 16 42 H 0.41 2.30 8.96 -40.82 -0.37 1.94 16 LS Contribution 356.00 15.07 5.36 5.36 Total: -1.00 -30.37 356.00 -7.76 -38.13 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -4.85 Total: 11.47 kcal Atomic # 6 Polarization: 8.52 SS G_CDS: -3.74 Total: 4.78 kcal Atomic # 7 Polarization: -49.71 SS G_CDS: 0.24 Total: -49.47 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: 0.25 Total: -25.24 kcal Atomic # 14 Polarization: 20.00 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -30.37 -7.76 -38.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439560495.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.583 kcal (2) G-P(sol) polarization free energy of solvation -30.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds