Wall clock time and date at job start Tue Mar 31 2020 16:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47413 * 2 1 4 4 H 1.09007 * 109.46584 * 305.00341 * 3 2 1 5 5 C 1.50697 * 109.47234 * 185.00385 * 3 2 1 6 6 H 1.08004 * 119.99629 * 239.99637 * 5 3 2 7 7 C 1.37875 * 120.00119 * 59.99771 * 5 3 2 8 8 N 1.31510 * 120.00367 * 359.97438 * 7 5 3 9 9 Si 1.86797 * 119.99834 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47359 * 59.99767 * 9 7 5 11 11 H 1.48502 * 109.47225 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47396 * 299.99719 * 9 7 5 13 13 N 1.46497 * 109.47171 * 65.00035 * 3 2 1 14 14 C 1.34775 * 120.00045 * 275.00328 * 13 3 2 15 15 O 1.21373 * 119.99928 * 359.97438 * 14 13 3 16 16 C 1.49326 * 120.00232 * 180.02562 * 14 13 3 17 17 O 1.21392 * 120.00058 * 359.97438 * 16 14 13 18 18 N 1.34775 * 120.00232 * 180.02562 * 16 14 13 19 19 C 1.39838 * 120.00195 * 185.27047 * 18 16 14 20 20 C 1.38959 * 120.16611 * 213.22199 * 19 18 16 21 21 C 1.38569 * 120.37818 * 180.11864 * 20 19 18 22 22 C 1.39406 * 120.02655 * 359.77271 * 21 20 19 23 23 C 1.39256 * 119.03365 * 0.17441 * 22 21 20 24 24 C 1.37587 * 121.03143 * 359.96649 * 23 22 21 25 25 C 1.51149 * 106.18940 * 179.97438 * 23 22 21 26 26 C 1.51385 * 104.21412 * 0.11735 * 25 23 22 27 27 O 1.21289 * 126.43759 * 179.97438 * 26 25 23 28 28 N 1.34365 * 107.13195 * 359.92592 * 26 25 23 29 29 H 1.08998 * 109.47084 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46662 * 299.99908 * 1 2 3 31 31 H 1.08993 * 109.47426 * 60.00058 * 1 2 3 32 32 H 1.09004 * 109.46930 * 239.99617 * 2 1 3 33 33 H 1.09003 * 109.47034 * 120.00321 * 2 1 3 34 34 H 0.96996 * 120.00188 * 180.02562 * 8 7 5 35 35 H 0.97001 * 120.00131 * 95.00271 * 13 3 2 36 36 H 0.97004 * 120.00114 * 5.27136 * 18 16 14 37 37 H 1.08000 * 119.85549 * 0.02562 * 20 19 18 38 38 H 1.08000 * 120.08911 * 180.02562 * 21 20 19 39 39 H 1.08001 * 120.06934 * 179.97438 * 24 23 22 40 40 H 1.09001 * 110.50689 * 241.39211 * 25 23 22 41 41 H 1.09000 * 110.50156 * 118.83579 * 25 23 22 42 42 H 0.96999 * 123.88564 * 179.97438 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5419 1.4442 -0.1239 6 1 4.1472 1.8888 0.6522 7 6 4.1432 0.8783 -1.2281 8 7 3.4062 0.3365 -2.1729 9 14 6.0049 0.8799 -1.3812 10 1 6.5966 0.1452 -0.2344 11 1 6.3978 0.2155 -2.6499 12 1 6.5005 2.2798 -1.3810 13 7 1.6525 2.0975 1.2518 14 6 0.4353 2.6644 1.3670 15 8 -0.3397 2.6327 0.4334 16 6 0.0404 3.3325 2.6427 17 8 0.8157 3.3647 3.5763 18 7 -1.1770 3.8990 2.7581 19 6 -1.5067 4.6195 3.9103 20 6 -2.8125 4.6177 4.3853 21 6 -3.1446 5.3321 5.5253 22 6 -2.1655 6.0545 6.2056 23 6 -0.8604 6.0474 5.7199 24 6 -0.5292 5.3411 4.5866 25 6 -0.0547 6.9102 6.6639 26 6 -1.0610 7.3711 7.6967 27 8 -0.8389 8.0894 8.6484 28 7 -2.2467 6.8358 7.3606 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.8293 -0.0620 -2.9495 35 1 2.2721 2.1231 1.9977 36 1 -1.8247 3.8069 2.0418 37 1 -3.5739 4.0577 3.8628 38 1 -4.1609 5.3271 5.8906 39 1 0.4878 5.3467 4.2234 40 1 0.3674 7.7644 6.1343 41 1 0.7356 6.3257 7.1349 42 1 -3.0649 6.9754 7.8625 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000439560495.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:48:27 Heat of formation + Delta-G solvation = -89.633458 kcal Electronic energy + Delta-G solvation = -27291.961848 eV Core-core repulsion = 23236.244272 eV Total energy + Delta-G solvation = -4055.717575 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.53251 -41.82001 -40.18587 -39.13897 -37.39366 -37.01265 -34.98612 -34.24965 -33.29558 -32.79298 -30.09919 -29.19634 -28.93946 -26.24081 -24.82344 -23.63044 -22.70812 -22.25367 -21.76091 -21.16020 -20.03739 -18.94447 -18.60403 -18.06466 -17.66344 -17.25480 -17.07638 -17.00087 -16.81371 -15.99228 -15.86993 -15.60036 -15.12211 -14.92110 -14.68487 -14.58199 -14.25134 -14.14829 -13.95624 -13.81320 -13.53041 -13.44924 -13.17987 -12.97356 -12.73284 -12.64675 -12.52044 -12.16958 -12.09457 -11.97387 -11.57680 -11.38180 -11.09570 -10.87096 -10.59928 -10.50331 -9.87483 -9.81205 -8.72530 -8.17290 -6.34051 -0.14910 0.28302 0.52935 1.30770 1.41479 1.47586 1.48142 1.55979 1.98461 2.20023 2.40481 2.71687 2.75865 3.11226 3.13193 3.37205 3.58043 3.82799 4.16491 4.19287 4.35839 4.43363 4.51280 4.56548 4.57828 4.73979 4.88636 4.91528 5.04123 5.05284 5.21773 5.25512 5.28456 5.39081 5.41920 5.53150 5.57931 5.70787 5.75515 5.81330 5.93084 6.05904 6.13707 6.59666 6.68955 6.83649 6.91215 7.13904 7.38115 8.87525 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.020356 B = 0.002399 C = 0.002184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.183318 B =11670.897439 C =12815.849449 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.124 4.124 3 C 0.277 3.723 4 H 0.015 0.985 5 C -0.554 4.554 6 H 0.068 0.932 7 C 0.022 3.978 8 N -0.909 5.909 9 Si 0.966 3.034 10 H -0.268 1.268 11 H -0.284 1.284 12 H -0.273 1.273 13 N -0.672 5.672 14 C 0.495 3.505 15 O -0.546 6.546 16 C 0.516 3.484 17 O -0.520 6.520 18 N -0.631 5.631 19 C 0.111 3.889 20 C -0.097 4.097 21 C -0.102 4.102 22 C 0.118 3.882 23 C -0.128 4.128 24 C -0.084 4.084 25 C -0.114 4.114 26 C 0.529 3.471 27 O -0.547 6.547 28 N -0.645 5.645 29 H 0.048 0.952 30 H 0.042 0.958 31 H 0.036 0.964 32 H 0.078 0.922 33 H 0.039 0.961 34 H 0.267 0.733 35 H 0.408 0.592 36 H 0.432 0.568 37 H 0.166 0.834 38 H 0.168 0.832 39 H 0.126 0.874 40 H 0.139 0.861 41 H 0.134 0.866 42 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.227 9.159 14.601 22.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.163 4.163 3 C 0.174 3.826 4 H 0.033 0.967 5 C -0.592 4.592 6 H 0.086 0.914 7 C -0.179 4.179 8 N -0.547 5.547 9 Si 0.791 3.209 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.198 1.198 13 N -0.321 5.321 14 C 0.275 3.725 15 O -0.425 6.425 16 C 0.298 3.702 17 O -0.395 6.395 18 N -0.278 5.278 19 C 0.017 3.983 20 C -0.118 4.118 21 C -0.123 4.123 22 C 0.021 3.979 23 C -0.132 4.132 24 C -0.104 4.104 25 C -0.153 4.153 26 C 0.318 3.682 27 O -0.425 6.425 28 N -0.289 5.289 29 H 0.067 0.933 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.076 0.924 35 H 0.244 0.756 36 H 0.272 0.728 37 H 0.183 0.817 38 H 0.185 0.815 39 H 0.144 0.856 40 H 0.156 0.844 41 H 0.152 0.848 42 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -13.927 9.447 14.869 22.457 hybrid contribution 0.737 -0.125 -0.276 0.797 sum -13.190 9.322 14.593 21.768 Atomic orbital electron populations 1.21706 0.96416 0.99695 1.00511 1.21826 0.94298 0.98567 1.01632 1.18615 0.93965 0.89577 0.80400 0.96668 1.21499 0.91349 1.39503 1.06846 0.91393 1.25654 1.03015 0.94236 0.94951 1.69995 1.37014 1.37925 1.09775 0.85484 0.79426 0.78429 0.77539 1.19280 1.20960 1.19772 1.46234 1.14523 1.53061 1.18296 1.20032 0.83649 0.80801 0.88053 1.90740 1.51509 1.59712 1.40522 1.20271 0.82882 0.79203 0.87839 1.90751 1.51465 1.57656 1.39596 1.43007 1.15202 1.49901 1.19722 1.17730 0.94982 0.95968 0.89604 1.21119 0.94551 0.99948 0.96167 1.20657 0.99477 0.97343 0.94823 1.18380 0.95243 0.95759 0.88522 1.19658 0.94482 1.01800 0.97232 1.20154 1.00036 0.95345 0.94904 1.21108 0.98256 1.01406 0.94558 1.20760 0.84477 0.78038 0.84878 1.90806 1.82147 1.38127 1.31413 1.43597 1.12754 1.46756 1.25785 0.93299 0.93898 0.94502 0.90402 0.94241 0.92395 0.75647 0.72764 0.81673 0.81453 0.85643 0.84380 0.84847 0.73563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.13 8.51 71.98 0.61 -4.51 16 2 C -0.12 -5.77 5.45 30.59 0.17 -5.60 16 3 C 0.28 13.45 2.24 44.24 0.10 13.54 16 4 H 0.02 0.87 7.58 -2.38 -0.02 0.85 16 5 C -0.55 -28.48 8.73 25.60 0.22 -28.25 16 6 H 0.07 3.35 7.74 -2.91 -0.02 3.32 16 7 C 0.02 1.16 5.29 84.65 0.45 1.61 16 8 N -0.91 -49.68 11.29 21.45 0.24 -49.44 16 9 Si 0.97 41.13 29.54 68.60 2.03 43.16 16 10 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 11 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 12 H -0.27 -11.39 7.11 99.48 0.71 -10.69 16 13 N -0.67 -27.17 5.01 -447.55 -2.24 -29.41 16 14 C 0.49 18.07 6.45 87.23 0.56 18.64 16 15 O -0.55 -21.75 13.62 -3.32 -0.05 -21.79 16 16 C 0.52 15.43 7.63 87.23 0.67 16.09 16 17 O -0.52 -16.95 14.16 -3.38 -0.05 -17.00 16 18 N -0.63 -14.12 5.33 -304.65 -1.62 -15.75 16 19 C 0.11 2.17 6.29 38.23 0.24 2.41 16 20 C -0.10 -1.23 9.96 22.52 0.22 -1.00 16 21 C -0.10 -1.06 10.11 22.63 0.23 -0.83 16 22 C 0.12 1.68 7.12 38.42 0.27 1.95 16 23 C -0.13 -2.26 6.35 -19.63 -0.12 -2.39 16 24 C -0.08 -1.78 8.65 22.31 0.19 -1.59 16 25 C -0.11 -1.77 6.87 29.46 0.20 -1.57 16 26 C 0.53 9.82 8.71 87.94 0.77 10.59 16 27 O -0.55 -14.20 18.03 -3.06 -0.06 -14.25 16 28 N -0.65 -8.63 5.89 -302.82 -1.78 -10.41 16 29 H 0.05 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.04 1.65 5.65 -2.38 -0.01 1.64 16 31 H 0.04 1.59 7.85 -2.39 -0.02 1.57 16 32 H 0.08 4.05 5.95 -2.38 -0.01 4.04 16 33 H 0.04 1.75 8.14 -2.39 -0.02 1.74 16 34 H 0.27 13.87 8.31 -92.71 -0.77 13.10 16 35 H 0.41 15.42 8.01 -92.71 -0.74 14.68 16 36 H 0.43 8.18 8.30 -92.71 -0.77 7.41 16 37 H 0.17 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.17 0.60 8.06 -2.91 -0.02 0.58 16 39 H 0.13 3.12 6.42 -2.91 -0.02 3.10 16 40 H 0.14 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 42 H 0.42 3.61 8.96 -92.71 -0.83 2.78 16 Total: -1.00 -66.82 356.00 0.03 -66.79 By element: Atomic # 1 Polarization: 30.25 SS G_CDS: -1.22 Total: 29.02 kcal Atomic # 6 Polarization: 14.30 SS G_CDS: 4.78 Total: 19.09 kcal Atomic # 7 Polarization: -99.60 SS G_CDS: -5.41 Total: -105.01 kcal Atomic # 8 Polarization: -52.90 SS G_CDS: -0.15 Total: -53.04 kcal Atomic # 14 Polarization: 41.13 SS G_CDS: 2.03 Total: 43.16 kcal Total: -66.82 0.03 -66.79 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000439560495.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.846 kcal (2) G-P(sol) polarization free energy of solvation -66.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.633 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds