Wall clock time and date at job start Tue Mar 31 2020 15:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38799 * 120.42525 * 2 1 4 4 C 1.39498 * 118.26186 * 179.97438 * 3 2 1 5 5 C 1.48454 * 120.55078 * 179.97438 * 4 3 2 6 6 O 1.21483 * 120.00012 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00050 * 179.72234 * 5 4 3 8 8 C 1.46504 * 119.99858 * 180.27244 * 7 5 4 9 9 C 1.53004 * 109.46932 * 180.02562 * 8 7 5 10 10 C 1.52993 * 109.47294 * 300.00342 * 9 8 7 11 11 C 1.53002 * 109.46736 * 60.00269 * 9 8 7 12 12 C 1.50699 * 109.46847 * 180.02562 * 9 8 7 13 13 H 1.07992 * 120.00518 * 359.97438 * 12 9 8 14 14 C 1.37876 * 119.99570 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00351 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99771 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.47191 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.46821 * 120.00167 * 16 14 12 19 19 H 1.48498 * 109.47283 * 239.99935 * 16 14 12 20 20 N 1.33102 * 118.89993 * 0.25559 * 4 3 2 21 21 C 1.31554 * 120.73624 * 359.48198 * 20 4 3 22 22 C 1.50706 * 119.04168 * 180.26554 * 21 20 4 23 23 F 1.39900 * 109.46985 * 285.26116 * 22 21 20 24 24 F 1.39904 * 109.46840 * 45.25775 * 22 21 20 25 25 F 1.39891 * 109.46983 * 165.25596 * 22 21 20 26 26 N 1.31906 * 121.91696 * 0.53583 * 21 20 4 27 27 H 1.09001 * 109.47468 * 89.99978 * 1 2 3 28 28 H 1.09005 * 109.47322 * 209.99937 * 1 2 3 29 29 H 1.08997 * 109.47300 * 329.99726 * 1 2 3 30 30 H 1.07998 * 120.87418 * 359.96364 * 3 2 1 31 31 H 0.97001 * 119.99727 * 0.28143 * 7 5 4 32 32 H 1.08998 * 109.47306 * 300.00567 * 8 7 5 33 33 H 1.08997 * 109.46860 * 60.00391 * 8 7 5 34 34 H 1.09007 * 109.47289 * 59.99673 * 10 9 8 35 35 H 1.08994 * 109.47403 * 179.97438 * 10 9 8 36 36 H 1.08997 * 109.47143 * 300.00083 * 10 9 8 37 37 H 1.09007 * 109.47307 * 60.00342 * 11 9 8 38 38 H 1.09001 * 109.47034 * 179.97438 * 11 9 8 39 39 H 1.08998 * 109.47612 * 299.99869 * 11 9 8 40 40 H 0.97005 * 120.00087 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1968 0.0000 4 6 3.6039 1.1442 0.0005 5 6 4.4062 2.3932 0.0000 6 8 3.8493 3.4729 -0.0005 7 7 5.7524 2.3295 0.0062 8 6 6.5442 3.5621 0.0117 9 6 8.0335 3.2116 0.0175 10 6 8.3594 2.3906 1.2666 11 6 8.3700 2.3949 -1.2318 12 6 8.8479 4.4796 0.0238 13 1 8.3528 5.4394 0.0232 14 6 10.2251 4.4143 0.0292 15 7 10.8280 3.2455 0.0283 16 14 11.2346 5.9861 0.0362 17 1 10.3241 7.1592 0.0355 18 1 12.0863 6.0218 1.2523 19 1 12.0959 6.0266 -1.1727 20 7 4.2027 -0.0445 -0.0041 21 6 3.4954 -1.1537 0.0010 22 6 4.2129 -2.4790 0.0015 23 9 4.7356 -2.7267 -1.2723 24 9 5.2548 -2.4448 0.9345 25 9 3.3145 -3.4955 0.3428 26 7 2.1764 -1.1397 0.0004 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6913 2.1441 -0.0006 31 1 6.1971 1.4674 0.0069 32 1 6.3123 4.1469 -0.8785 33 1 6.3040 4.1441 0.9014 34 1 7.7703 1.4734 1.2626 35 1 9.4202 2.1405 1.2706 36 1 8.1196 2.9724 2.1566 37 1 8.1379 2.9799 -2.1218 38 1 9.4311 2.1456 -1.2279 39 1 7.7810 1.4778 -1.2360 40 1 11.7970 3.1996 0.0325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457993607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:38 Heat of formation + Delta-G solvation = -140.509083 kcal Electronic energy + Delta-G solvation = -28620.431815 eV Core-core repulsion = 24020.651367 eV Total energy + Delta-G solvation = -4599.780448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -50.39076 -47.90811 -47.87601 -41.82613 -39.34674 -36.51804 -35.22640 -33.61314 -33.35293 -30.90684 -29.37412 -27.64687 -26.42486 -25.74179 -25.33979 -23.96570 -23.07370 -20.83113 -19.19367 -18.98410 -18.81875 -18.67390 -17.91157 -17.13812 -16.09305 -15.92719 -15.79130 -15.20393 -14.85958 -14.74281 -14.65779 -14.64245 -14.27645 -14.23627 -14.00485 -13.98018 -13.53531 -13.52611 -13.05376 -12.95476 -12.90640 -12.86340 -12.24520 -11.53315 -11.44698 -11.23535 -11.08796 -10.90490 -10.70028 -10.50682 -10.42328 -10.22371 -10.20211 -9.82845 -9.67560 -9.36553 -8.81807 -8.63725 -8.39206 -6.04234 -4.15079 -0.07363 0.21441 1.85381 2.46658 2.90958 3.07559 3.23272 3.25857 3.31498 3.34786 3.39031 3.99859 4.04486 4.06331 4.24576 4.36464 4.41312 4.69777 4.98912 5.03818 5.17892 5.22549 5.35386 5.66880 6.08678 6.20426 6.20671 6.45036 6.59857 6.82325 6.82999 6.91628 6.98139 7.16081 7.31421 7.53289 7.66536 7.79453 7.98339 8.09365 8.27408 8.38048 8.85393 9.51045 10.97157 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.016803 B = 0.003154 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.923158 B = 8876.687826 C =10181.577433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C 0.180 3.820 3 C -0.142 4.142 4 C 0.149 3.851 5 C 0.557 3.443 6 O -0.531 6.531 7 N -0.683 5.683 8 C 0.127 3.873 9 C 0.056 3.944 10 C -0.133 4.133 11 C -0.133 4.133 12 C -0.507 4.507 13 H 0.059 0.941 14 C 0.067 3.933 15 N -0.884 5.884 16 Si 0.894 3.106 17 H -0.273 1.273 18 H -0.284 1.284 19 H -0.284 1.284 20 N -0.458 5.458 21 C 0.241 3.759 22 C 0.549 3.451 23 F -0.161 7.161 24 F -0.155 7.155 25 F -0.156 7.156 26 N -0.472 5.472 27 H 0.093 0.907 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.173 0.827 31 H 0.411 0.589 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.008 0.992 35 H 0.087 0.913 36 H 0.027 0.973 37 H 0.027 0.973 38 H 0.087 0.913 39 H 0.008 0.992 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.361 -10.569 -0.034 21.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.033 3.967 3 C -0.165 4.165 4 C 0.002 3.998 5 C 0.338 3.662 6 O -0.408 6.408 7 N -0.333 5.333 8 C 0.005 3.995 9 C 0.055 3.945 10 C -0.190 4.190 11 C -0.191 4.191 12 C -0.546 4.546 13 H 0.077 0.923 14 C -0.135 4.135 15 N -0.522 5.522 16 Si 0.722 3.278 17 H -0.198 1.198 18 H -0.210 1.210 19 H -0.210 1.210 20 N -0.175 5.175 21 C -0.031 4.031 22 C 0.493 3.507 23 F -0.142 7.142 24 F -0.136 7.136 25 F -0.137 7.137 26 N -0.188 5.188 27 H 0.112 0.888 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.191 0.809 31 H 0.249 0.751 32 H 0.080 0.920 33 H 0.080 0.920 34 H 0.027 0.973 35 H 0.106 0.894 36 H 0.046 0.954 37 H 0.046 0.954 38 H 0.106 0.894 39 H 0.027 0.973 40 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.995 -10.700 -0.038 20.936 hybrid contribution 0.580 0.934 -0.019 1.100 sum -17.415 -9.766 -0.057 19.966 Atomic orbital electron populations 1.20870 0.85993 1.04966 1.04517 1.21917 0.98236 0.86730 0.89825 1.23087 0.94643 1.01805 0.96945 1.22058 0.92444 0.91967 0.93372 1.17638 0.83256 0.86131 0.79167 1.90793 1.71359 1.27509 1.51126 1.46313 1.04728 1.12889 1.69356 1.21956 0.92839 0.83603 1.01075 1.18384 0.87321 0.95696 0.93099 1.21846 1.03676 0.96109 0.97405 1.21851 1.03701 0.96110 0.97394 1.20983 0.90931 0.91543 1.51135 0.92299 1.24883 0.97762 0.96115 0.94727 1.69817 1.09091 1.22963 1.50321 0.86508 0.80167 0.83597 0.77554 1.19758 1.21049 1.21048 1.67911 1.41304 0.97922 1.10373 1.22494 0.88019 0.93126 0.99482 1.17040 0.76771 0.82040 0.74885 1.93277 1.86983 1.94594 1.39344 1.93296 1.58564 1.96433 1.65327 1.93254 1.67477 1.60983 1.92000 1.67767 1.07814 1.31593 1.11608 0.88825 0.89180 0.89145 0.80928 0.75120 0.91971 0.91959 0.97307 0.89438 0.95386 0.95393 0.89415 0.97319 0.92980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.55 10.22 36.01 0.37 -0.18 16 2 C 0.18 1.72 6.83 -82.24 -0.56 1.16 16 3 C -0.14 -1.53 9.41 -38.90 -0.37 -1.90 16 4 C 0.15 2.10 6.79 -82.64 -0.56 1.54 16 5 C 0.56 9.40 7.83 -12.05 -0.09 9.31 16 6 O -0.53 -9.96 16.43 5.38 0.09 -9.87 16 7 N -0.68 -12.33 4.95 -61.05 -0.30 -12.63 16 8 C 0.13 2.61 4.50 -4.04 -0.02 2.59 16 9 C 0.06 1.28 0.50 -155.66 -0.08 1.20 16 10 C -0.13 -3.00 8.08 37.15 0.30 -2.70 16 11 C -0.13 -3.01 8.08 37.16 0.30 -2.71 16 12 C -0.51 -13.05 8.01 -34.44 -0.28 -13.33 16 13 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 14 C 0.07 1.73 5.15 -17.82 -0.09 1.64 16 15 N -0.88 -23.42 9.35 55.43 0.52 -22.90 16 16 Si 0.89 20.48 29.54 -169.99 -5.02 15.46 16 17 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 18 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 N -0.46 -6.64 9.48 -7.32 -0.07 -6.71 16 21 C 0.24 3.19 7.08 -157.30 -1.11 2.08 16 22 C 0.55 6.89 3.49 36.01 0.13 7.01 16 23 F -0.16 -2.05 17.30 2.25 0.04 -2.01 16 24 F -0.16 -2.05 17.20 2.25 0.04 -2.01 16 25 F -0.16 -1.82 16.87 2.25 0.04 -1.79 16 26 N -0.47 -5.56 9.75 -7.00 -0.07 -5.63 16 27 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.09 0.30 8.10 -51.93 -0.42 -0.12 16 30 H 0.17 1.53 7.74 -52.49 -0.41 1.12 16 31 H 0.41 7.28 5.55 -40.82 -0.23 7.06 16 32 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 33 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.01 0.17 6.86 -51.93 -0.36 -0.19 16 35 H 0.09 2.19 6.07 -51.93 -0.32 1.88 16 36 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.03 0.62 8.14 -51.93 -0.42 0.19 16 38 H 0.09 2.20 6.07 -51.93 -0.32 1.88 16 39 H 0.01 0.16 6.86 -51.93 -0.36 -0.19 16 40 H 0.26 6.65 8.31 -40.82 -0.34 6.31 16 LS Contribution 350.30 15.07 5.28 5.28 Total: -1.00 -28.20 350.30 -6.00 -34.20 By element: Atomic # 1 Polarization: 7.37 SS G_CDS: -4.47 Total: 2.90 kcal Atomic # 6 Polarization: 7.79 SS G_CDS: -2.07 Total: 5.72 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: 0.08 Total: -47.87 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.87 kcal Atomic # 9 Polarization: -5.92 SS G_CDS: 0.12 Total: -5.80 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.02 Total: 15.46 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -28.20 -6.00 -34.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457993607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.310 kcal (2) G-P(sol) polarization free energy of solvation -28.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.509 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds