Wall clock time and date at job start Tue Mar 31 2020 15:53:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38799 * 120.42525 * 2 1 4 4 C 1.39498 * 118.26186 * 179.97438 * 3 2 1 5 5 C 1.48454 * 120.55078 * 179.97438 * 4 3 2 6 6 O 1.21483 * 120.00012 * 0.02562 * 5 4 3 7 7 N 1.34777 * 120.00050 * 179.72234 * 5 4 3 8 8 C 1.46504 * 119.99858 * 180.27244 * 7 5 4 9 9 C 1.53004 * 109.46932 * 180.02562 * 8 7 5 10 10 C 1.52993 * 109.47294 * 300.00342 * 9 8 7 11 11 C 1.53002 * 109.46736 * 60.00269 * 9 8 7 12 12 C 1.50699 * 109.46847 * 180.02562 * 9 8 7 13 13 H 1.07992 * 120.00518 * 359.97438 * 12 9 8 14 14 C 1.37876 * 119.99570 * 180.02562 * 12 9 8 15 15 N 1.31514 * 120.00351 * 0.02562 * 14 12 9 16 16 Si 1.86803 * 119.99771 * 179.97438 * 14 12 9 17 17 H 1.48496 * 109.47191 * 0.02562 * 16 14 12 18 18 H 1.48510 * 109.46821 * 120.00167 * 16 14 12 19 19 H 1.48498 * 109.47283 * 239.99935 * 16 14 12 20 20 N 1.33102 * 118.89993 * 0.25559 * 4 3 2 21 21 C 1.31554 * 120.73624 * 359.48198 * 20 4 3 22 22 C 1.50706 * 119.04168 * 180.26554 * 21 20 4 23 23 F 1.39900 * 109.46985 * 285.26116 * 22 21 20 24 24 F 1.39904 * 109.46840 * 45.25775 * 22 21 20 25 25 F 1.39891 * 109.46983 * 165.25596 * 22 21 20 26 26 N 1.31906 * 121.91696 * 0.53583 * 21 20 4 27 27 H 1.09001 * 109.47468 * 89.99978 * 1 2 3 28 28 H 1.09005 * 109.47322 * 209.99937 * 1 2 3 29 29 H 1.08997 * 109.47300 * 329.99726 * 1 2 3 30 30 H 1.07998 * 120.87418 * 359.96364 * 3 2 1 31 31 H 0.97001 * 119.99727 * 0.28143 * 7 5 4 32 32 H 1.08998 * 109.47306 * 300.00567 * 8 7 5 33 33 H 1.08997 * 109.46860 * 60.00391 * 8 7 5 34 34 H 1.09007 * 109.47289 * 59.99673 * 10 9 8 35 35 H 1.08994 * 109.47403 * 179.97438 * 10 9 8 36 36 H 1.08997 * 109.47143 * 300.00083 * 10 9 8 37 37 H 1.09007 * 109.47307 * 60.00342 * 11 9 8 38 38 H 1.09001 * 109.47034 * 179.97438 * 11 9 8 39 39 H 1.08998 * 109.47612 * 299.99869 * 11 9 8 40 40 H 0.97005 * 120.00087 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2099 1.1968 0.0000 4 6 3.6039 1.1442 0.0005 5 6 4.4062 2.3932 0.0000 6 8 3.8493 3.4729 -0.0005 7 7 5.7524 2.3295 0.0062 8 6 6.5442 3.5621 0.0117 9 6 8.0335 3.2116 0.0175 10 6 8.3594 2.3906 1.2666 11 6 8.3700 2.3949 -1.2318 12 6 8.8479 4.4796 0.0238 13 1 8.3528 5.4394 0.0232 14 6 10.2251 4.4143 0.0292 15 7 10.8280 3.2455 0.0283 16 14 11.2346 5.9861 0.0362 17 1 10.3241 7.1592 0.0355 18 1 12.0863 6.0218 1.2523 19 1 12.0959 6.0266 -1.1727 20 7 4.2027 -0.0445 -0.0041 21 6 3.4954 -1.1537 0.0010 22 6 4.2129 -2.4790 0.0015 23 9 4.7356 -2.7267 -1.2723 24 9 5.2548 -2.4448 0.9345 25 9 3.3145 -3.4955 0.3428 26 7 2.1764 -1.1397 0.0004 27 1 -0.3634 0.0000 -1.0276 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5139 30 1 1.6913 2.1441 -0.0006 31 1 6.1971 1.4674 0.0069 32 1 6.3123 4.1469 -0.8785 33 1 6.3040 4.1441 0.9014 34 1 7.7703 1.4734 1.2626 35 1 9.4202 2.1405 1.2706 36 1 8.1196 2.9724 2.1566 37 1 8.1379 2.9799 -2.1218 38 1 9.4311 2.1456 -1.2279 39 1 7.7810 1.4778 -1.2360 40 1 11.7970 3.1996 0.0325 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457993607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:38 Heat of formation + Delta-G solvation = -156.885917 kcal Electronic energy + Delta-G solvation = -28621.141968 eV Core-core repulsion = 24020.651367 eV Total energy + Delta-G solvation = -4600.490601 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.125 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.37282 -48.89687 -48.85413 -42.78712 -40.72295 -38.23192 -36.13868 -35.04572 -34.51587 -32.72983 -30.04194 -28.60144 -27.88295 -27.60132 -27.21691 -25.28172 -23.96570 -22.07929 -20.69859 -20.26784 -19.80686 -19.74586 -18.96560 -18.28705 -17.77529 -16.99227 -16.93590 -16.69031 -16.51148 -16.10511 -15.63555 -15.63239 -15.32356 -15.26358 -14.99062 -14.96815 -14.81269 -14.70329 -14.64075 -14.06226 -14.00033 -13.94966 -13.25941 -13.24180 -13.13129 -12.72694 -12.57315 -12.42530 -12.29899 -12.14700 -12.00412 -11.75539 -11.52018 -11.27976 -11.07262 -10.83159 -10.70926 -10.41843 -10.11560 -8.02059 -6.18609 -1.04726 -0.68556 0.89806 1.35193 1.42778 1.46892 1.55955 1.76045 2.12086 2.21008 2.21479 2.47046 3.04122 3.08461 3.17762 3.20264 3.21945 3.48689 3.89340 4.09667 4.36181 4.46622 4.58730 4.66947 4.71634 4.75078 4.91951 5.02532 5.05309 5.15777 5.20325 5.22562 5.33543 5.48659 5.63687 5.67232 6.10091 6.17690 6.20350 6.40140 6.41958 6.84484 6.92721 7.49606 8.97317 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.016803 B = 0.003154 C = 0.002749 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1665.923158 B = 8876.687826 C =10181.577433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.191 3.809 3 C -0.126 4.126 4 C 0.126 3.874 5 C 0.562 3.438 6 O -0.551 6.551 7 N -0.687 5.687 8 C 0.143 3.857 9 C 0.050 3.950 10 C -0.122 4.122 11 C -0.122 4.122 12 C -0.526 4.526 13 H 0.051 0.949 14 C 0.026 3.974 15 N -0.901 5.901 16 Si 0.948 3.052 17 H -0.271 1.271 18 H -0.283 1.283 19 H -0.283 1.283 20 N -0.479 5.479 21 C 0.231 3.769 22 C 0.552 3.448 23 F -0.164 7.164 24 F -0.161 7.161 25 F -0.150 7.150 26 N -0.476 5.476 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.115 0.885 30 H 0.195 0.805 31 H 0.413 0.587 32 H 0.054 0.946 33 H 0.054 0.946 34 H 0.028 0.972 35 H 0.062 0.938 36 H 0.022 0.978 37 H 0.022 0.978 38 H 0.063 0.937 39 H 0.028 0.972 40 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.663 -10.797 -0.054 23.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.043 3.957 3 C -0.148 4.148 4 C -0.020 4.020 5 C 0.345 3.655 6 O -0.429 6.429 7 N -0.337 5.337 8 C 0.020 3.980 9 C 0.050 3.950 10 C -0.179 4.179 11 C -0.180 4.180 12 C -0.564 4.564 13 H 0.070 0.930 14 C -0.173 4.173 15 N -0.540 5.540 16 Si 0.775 3.225 17 H -0.196 1.196 18 H -0.209 1.209 19 H -0.209 1.209 20 N -0.196 5.196 21 C -0.041 4.041 22 C 0.495 3.505 23 F -0.145 7.145 24 F -0.143 7.143 25 F -0.132 7.132 26 N -0.192 5.192 27 H 0.131 0.869 28 H 0.115 0.885 29 H 0.134 0.866 30 H 0.212 0.788 31 H 0.251 0.749 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.047 0.953 35 H 0.081 0.919 36 H 0.042 0.958 37 H 0.042 0.958 38 H 0.082 0.918 39 H 0.047 0.953 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -20.303 -10.938 -0.059 23.062 hybrid contribution 1.174 0.964 -0.015 1.519 sum -19.129 -9.974 -0.073 21.574 Atomic orbital electron populations 1.21102 0.82321 1.06565 1.06115 1.22696 1.00160 0.85442 0.87372 1.23380 0.93160 1.03372 0.94935 1.21651 0.93391 0.90698 0.96230 1.17925 0.82728 0.87024 0.77791 1.90772 1.71629 1.28728 1.51813 1.46151 1.05329 1.11894 1.70335 1.21527 0.91714 0.84468 1.00291 1.18378 0.88589 0.94837 0.93238 1.21681 1.02311 0.96861 0.97087 1.21687 1.02344 0.96868 0.97074 1.21274 0.91597 0.92349 1.51195 0.93027 1.25497 0.98689 0.98487 0.94666 1.69935 1.09137 1.24216 1.50663 0.85659 0.78750 0.80737 0.77362 1.19587 1.20925 1.20923 1.67763 1.42197 0.98355 1.11300 1.22518 0.88689 0.92758 1.00168 1.17006 0.76648 0.82191 0.74630 1.93267 1.87059 1.94635 1.39540 1.93280 1.58939 1.96485 1.65565 1.93260 1.67226 1.60728 1.91938 1.67886 1.07060 1.32594 1.11649 0.86887 0.88481 0.86644 0.78754 0.74932 0.92792 0.92776 0.95300 0.91868 0.95835 0.95844 0.91840 0.95299 0.93075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.62 10.22 71.24 0.73 0.10 16 2 C 0.19 3.05 6.83 42.64 0.29 3.34 16 3 C -0.13 -2.38 9.41 22.71 0.21 -2.17 16 4 C 0.13 3.39 6.79 41.98 0.29 3.67 16 5 C 0.56 18.58 7.83 86.97 0.68 19.26 16 6 O -0.55 -20.21 16.43 -3.66 -0.06 -20.27 16 7 N -0.69 -24.59 4.95 -465.37 -2.30 -26.89 16 8 C 0.14 5.90 4.50 86.38 0.39 6.29 16 9 C 0.05 2.32 0.50 -52.93 -0.03 2.30 16 10 C -0.12 -5.54 8.08 71.98 0.58 -4.96 16 11 C -0.12 -5.55 8.08 71.98 0.58 -4.97 16 12 C -0.53 -27.33 8.01 25.60 0.21 -27.12 16 13 H 0.05 2.69 7.74 -2.91 -0.02 2.67 16 14 C 0.03 1.38 5.15 84.65 0.44 1.81 16 15 N -0.90 -48.33 9.35 21.45 0.20 -48.13 16 16 Si 0.95 42.22 29.54 68.60 2.03 44.25 16 17 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 18 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 20 N -0.48 -13.46 9.48 -177.08 -1.68 -15.14 16 21 C 0.23 5.83 7.08 138.79 0.98 6.81 16 22 C 0.55 13.42 3.49 71.24 0.25 13.67 16 23 F -0.16 -4.08 17.30 44.97 0.78 -3.30 16 24 F -0.16 -4.21 17.20 44.97 0.77 -3.43 16 25 F -0.15 -3.34 16.87 44.97 0.76 -2.59 16 26 N -0.48 -10.15 9.75 -176.05 -1.72 -11.87 16 27 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 28 H 0.10 0.54 8.14 -2.38 -0.02 0.52 16 29 H 0.12 0.19 8.10 -2.39 -0.02 0.17 16 30 H 0.20 2.78 7.74 -2.91 -0.02 2.75 16 31 H 0.41 14.47 5.55 -92.71 -0.51 13.95 16 32 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 33 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 34 H 0.03 1.15 6.86 -2.38 -0.02 1.14 16 35 H 0.06 3.20 6.07 -2.39 -0.01 3.19 16 36 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.02 1.03 8.14 -2.38 -0.02 1.01 16 38 H 0.06 3.22 6.07 -2.39 -0.01 3.20 16 39 H 0.03 1.15 6.86 -2.39 -0.02 1.14 16 40 H 0.26 13.42 8.31 -92.70 -0.77 12.65 16 Total: -1.00 -60.76 350.30 4.97 -55.80 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 0.59 Total: 13.54 kcal Atomic # 6 Polarization: 12.44 SS G_CDS: 5.60 Total: 18.04 kcal Atomic # 7 Polarization: -96.53 SS G_CDS: -5.50 Total: -102.03 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.06 Total: -20.27 kcal Atomic # 9 Polarization: -11.63 SS G_CDS: 2.31 Total: -9.32 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Total: -60.76 4.97 -55.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457993607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.089 kcal (2) G-P(sol) polarization free energy of solvation -60.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds