Wall clock time and date at job start Tue Mar 31 2020 16:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47169 * 2 1 4 4 H 1.08995 * 109.47372 * 177.97187 * 3 2 1 5 5 C 1.50705 * 109.47008 * 57.97061 * 3 2 1 6 6 H 1.08003 * 119.99936 * 239.99564 * 5 3 2 7 7 C 1.37876 * 119.99715 * 60.00433 * 5 3 2 8 8 N 1.31517 * 120.00359 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99777 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47076 * 59.99679 * 9 7 5 11 11 H 1.48500 * 109.47057 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46968 * 299.99429 * 9 7 5 13 13 N 1.46903 * 109.47412 * 297.97171 * 3 2 1 14 14 C 1.46893 * 110.99899 * 273.75118 * 13 3 2 15 15 C 1.50702 * 109.47345 * 174.93890 * 14 13 3 16 16 N 1.30972 * 126.43888 * 90.30453 * 15 14 13 17 17 C 1.35241 * 105.58176 * 180.10233 * 16 15 14 18 18 C 1.48345 * 126.41678 * 179.88827 * 17 16 15 19 19 C 1.39371 * 120.05514 * 359.70148 * 18 17 16 20 20 C 1.37949 * 120.02336 * 180.02562 * 19 18 17 21 21 C 1.38712 * 120.18436 * 0.02562 * 20 19 18 22 22 C 1.39414 * 120.01983 * 359.97438 * 21 20 19 23 23 C 1.38285 * 119.95155 * 0.02562 * 22 21 20 24 24 O 1.36535 * 108.61526 * 180.02562 * 22 21 20 25 25 C 1.43975 * 105.47089 * 17.30903 * 24 22 21 26 26 O 1.36482 * 131.37714 * 180.02562 * 21 20 19 27 27 N 1.30805 * 107.15962 * 359.61724 * 17 16 15 28 28 O 1.21285 * 110.08950 * 0.24110 * 27 17 16 29 29 H 1.09002 * 109.46951 * 294.44839 * 1 2 3 30 30 H 1.08995 * 109.47526 * 54.44615 * 1 2 3 31 31 H 1.09007 * 109.47500 * 174.45170 * 1 2 3 32 32 H 1.09008 * 109.46535 * 240.00206 * 2 1 3 33 33 H 1.09003 * 109.47234 * 120.00634 * 2 1 3 34 34 H 0.96997 * 120.00475 * 180.02562 * 8 7 5 35 35 H 1.00901 * 111.00195 * 149.79614 * 13 3 2 36 36 H 1.08992 * 109.47823 * 54.93549 * 14 13 3 37 37 H 1.09005 * 109.47232 * 294.93229 * 14 13 3 38 38 H 1.08000 * 119.99102 * 359.75715 * 19 18 17 39 39 H 1.08001 * 119.90745 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.03367 * 180.02562 * 23 22 21 41 41 H 1.08997 * 110.57352 * 91.39022 * 25 24 22 42 42 H 1.09002 * 110.56844 * 214.25564 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1293 1.4427 0.0364 5 6 1.4969 2.1672 1.2046 6 1 0.8799 3.0440 1.0744 7 6 1.7880 1.7110 2.4727 8 7 2.5391 0.6431 2.6312 9 14 1.1155 2.6098 3.9659 10 1 -0.3686 2.6101 3.9165 11 1 1.5691 1.9238 5.2023 12 1 1.6111 4.0096 3.9657 13 7 1.5908 2.1207 -1.2232 14 6 2.5278 1.8858 -2.3298 15 6 1.9736 2.4900 -3.5942 16 7 2.1796 3.7080 -4.0296 17 6 1.4881 3.8014 -5.1882 18 6 1.4011 4.9924 -6.0682 19 6 2.0693 6.1658 -5.7230 20 6 1.9874 7.2731 -6.5416 21 6 1.2406 7.2234 -7.7094 22 6 0.5703 6.0521 -8.0593 23 6 0.6501 4.9402 -7.2411 24 8 -0.0839 6.2604 -9.2395 25 6 0.5233 7.4328 -9.8136 26 8 1.0056 8.1633 -8.6707 27 7 0.9153 2.6429 -5.3902 28 8 1.1845 1.8816 -4.4852 29 1 -0.3633 0.4253 0.9355 30 1 -0.3634 0.5975 -0.8360 31 1 -0.3634 -1.0229 -0.0994 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.7436 0.3220 3.5233 35 1 1.4615 3.1084 -1.0623 36 1 2.6643 0.8135 -2.4690 37 1 3.4877 2.3470 -2.0972 38 1 2.6478 6.2095 -4.8120 39 1 2.5063 8.1812 -6.2724 40 1 0.1317 4.0320 -7.5111 41 1 1.3504 7.1548 -10.4669 42 1 -0.2163 8.0192 -10.3588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000519177259.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:22 Heat of formation + Delta-G solvation = 38.452399 kcal Electronic energy + Delta-G solvation = -26950.239915 eV Core-core repulsion = 22900.076559 eV Total energy + Delta-G solvation = -4050.163356 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -45.41025 -42.53983 -38.47679 -36.74626 -36.68836 -35.53975 -33.64910 -32.10245 -31.01364 -30.54118 -30.12856 -27.27154 -26.39724 -25.09643 -24.66019 -23.48100 -23.20298 -22.68017 -21.28108 -19.21355 -18.60045 -18.27807 -17.90708 -17.71796 -17.14597 -16.52606 -16.37648 -15.23902 -14.98734 -14.86745 -14.59131 -14.28095 -14.25985 -14.11242 -13.73837 -13.46252 -13.38227 -13.07897 -13.01253 -12.55914 -12.17001 -12.13159 -11.90875 -11.62188 -11.57974 -11.17129 -10.99089 -10.95336 -10.86039 -10.47705 -10.27677 -10.02139 -9.84925 -9.45339 -9.20663 -8.90719 -8.56105 -8.36215 -7.56991 -6.09978 -4.15814 0.33997 0.83277 1.36270 2.19830 2.43301 2.95075 2.97448 3.27860 3.32150 3.32868 3.35847 3.51392 3.96102 4.05277 4.24838 4.35057 4.47251 4.69478 4.77847 4.86912 4.99081 5.14064 5.17608 5.26129 5.41079 5.61365 5.63232 5.67907 5.78371 5.85986 5.96387 6.04717 6.10829 6.43934 6.63536 6.68426 6.77476 7.07975 7.16607 7.37104 7.63234 7.66572 7.74231 8.05618 8.19571 8.21825 8.44020 8.89473 9.49219 10.95957 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022200 B = 0.002162 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.965468 B =12946.452954 C =13665.827051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.105 4.105 3 C 0.219 3.781 4 H 0.009 0.991 5 C -0.516 4.516 6 H 0.060 0.940 7 C 0.066 3.934 8 N -0.887 5.887 9 Si 0.895 3.105 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.278 1.278 13 N -0.680 5.680 14 C 0.144 3.856 15 C 0.219 3.781 16 N -0.479 5.479 17 C 0.206 3.794 18 C -0.003 4.003 19 C -0.061 4.061 20 C -0.102 4.102 21 C 0.047 3.953 22 C 0.028 3.972 23 C -0.067 4.067 24 O -0.306 6.306 25 C 0.213 3.787 26 O -0.307 6.307 27 N -0.380 5.380 28 O 0.090 5.910 29 H 0.052 0.948 30 H 0.046 0.954 31 H 0.015 0.985 32 H 0.013 0.987 33 H 0.089 0.911 34 H 0.263 0.737 35 H 0.341 0.659 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.154 0.846 39 H 0.145 0.855 40 H 0.144 0.856 41 H 0.086 0.914 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.297 9.925 -21.048 23.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.143 4.143 3 C 0.113 3.887 4 H 0.026 0.974 5 C -0.555 4.555 6 H 0.078 0.922 7 C -0.136 4.136 8 N -0.525 5.525 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.203 1.203 13 N -0.313 5.313 14 C 0.012 3.988 15 C -0.002 4.002 16 N -0.213 5.213 17 C -0.064 4.064 18 C -0.005 4.005 19 C -0.081 4.081 20 C -0.120 4.120 21 C 0.002 3.998 22 C -0.016 4.016 23 C -0.087 4.087 24 O -0.222 6.222 25 C 0.101 3.899 26 O -0.223 6.223 27 N -0.086 5.086 28 O 0.029 5.971 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.034 0.966 32 H 0.032 0.968 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.159 0.841 36 H 0.123 0.877 37 H 0.092 0.908 38 H 0.172 0.828 39 H 0.163 0.837 40 H 0.162 0.838 41 H 0.103 0.897 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.523 9.617 -21.877 23.903 hybrid contribution 0.272 0.964 0.950 1.380 sum -0.252 10.581 -20.927 23.451 Atomic orbital electron populations 1.21452 0.97350 0.97379 1.01662 1.21476 0.95307 0.97829 0.99698 1.19199 0.93800 0.91688 0.84045 0.97377 1.21068 1.32155 1.12185 0.90087 0.92190 1.24853 0.94947 0.94979 0.98855 1.69858 1.37043 1.22891 1.22731 0.86601 0.79470 0.79736 0.81875 1.20178 1.21315 1.20314 1.60753 1.46030 1.17479 1.07085 1.20538 0.94371 1.00945 0.82930 1.29116 0.89121 0.86984 0.94954 1.71994 1.23365 1.16910 1.09061 1.23531 0.96177 0.93508 0.93191 1.16850 1.00743 0.90339 0.92590 1.21044 0.97622 0.90054 0.99403 1.20024 0.99572 1.00273 0.92157 1.20005 0.99265 0.86790 0.93779 1.19441 0.97067 0.95177 0.89929 1.19911 0.99550 0.96628 0.92640 1.87398 1.56234 1.46334 1.32273 1.25667 0.96480 0.79952 0.87804 1.87369 1.81618 1.30376 1.22895 1.74879 1.21108 1.02670 1.09953 1.85297 1.50057 1.37305 1.24419 0.92864 0.93470 0.96632 0.96819 0.89298 0.92746 0.84087 0.87727 0.90791 0.82808 0.83741 0.83821 0.89674 0.84946 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.58 9.46 37.16 0.35 -2.23 16 2 C -0.10 -2.32 5.57 -26.74 -0.15 -2.47 16 3 C 0.22 4.93 2.30 -68.86 -0.16 4.77 16 4 H 0.01 0.21 7.84 -51.93 -0.41 -0.20 16 5 C -0.52 -12.96 7.34 -34.44 -0.25 -13.21 16 6 H 0.06 1.51 7.60 -52.48 -0.40 1.11 16 7 C 0.07 1.71 5.30 -17.82 -0.09 1.61 16 8 N -0.89 -23.69 11.34 55.43 0.63 -23.06 16 9 Si 0.90 20.35 29.54 -169.99 -5.02 15.33 16 10 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 11 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 13 N -0.68 -12.87 5.50 -109.23 -0.60 -13.47 16 14 C 0.14 2.23 6.08 -4.98 -0.03 2.20 16 15 C 0.22 3.38 8.05 -12.98 -0.10 3.28 16 16 N -0.48 -7.44 11.25 -9.87 -0.11 -7.56 16 17 C 0.21 3.09 7.80 -156.10 -1.22 1.87 16 18 C 0.00 -0.04 5.88 -104.89 -0.62 -0.66 16 19 C -0.06 -0.66 9.69 -39.27 -0.38 -1.04 16 20 C -0.10 -0.97 10.04 -39.51 -0.40 -1.36 16 21 C 0.05 0.50 7.15 -38.97 -0.28 0.22 16 22 C 0.03 0.32 7.14 -39.13 -0.28 0.04 16 23 C -0.07 -0.80 9.70 -39.14 -0.38 -1.18 16 24 O -0.31 -3.19 11.40 -45.80 -0.52 -3.71 16 25 C 0.21 1.46 8.89 101.05 0.90 2.36 16 26 O -0.31 -2.96 11.40 -45.63 -0.52 -3.48 16 27 N -0.38 -6.00 11.85 30.98 0.37 -5.64 16 28 O 0.09 1.43 11.29 18.03 0.20 1.63 16 29 H 0.05 1.23 7.37 -51.93 -0.38 0.85 16 30 H 0.05 0.98 7.50 -51.93 -0.39 0.59 16 31 H 0.01 0.29 8.14 -51.92 -0.42 -0.13 16 32 H 0.01 0.27 7.43 -51.92 -0.39 -0.12 16 33 H 0.09 2.22 6.13 -51.93 -0.32 1.90 16 34 H 0.26 6.78 8.31 -40.82 -0.34 6.44 16 35 H 0.34 6.54 8.24 -39.29 -0.32 6.22 16 36 H 0.10 1.51 7.40 -51.93 -0.38 1.13 16 37 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.15 1.55 7.87 -52.49 -0.41 1.14 16 39 H 0.14 1.02 8.06 -52.49 -0.42 0.60 16 40 H 0.14 1.70 7.86 -52.49 -0.41 1.29 16 41 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.13 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 359.45 15.07 5.42 5.42 Total: -1.00 -28.42 359.45 -8.31 -36.74 By element: Atomic # 1 Polarization: 8.67 SS G_CDS: -5.06 Total: 3.61 kcal Atomic # 6 Polarization: -2.72 SS G_CDS: -3.09 Total: -5.81 kcal Atomic # 7 Polarization: -50.00 SS G_CDS: 0.28 Total: -49.72 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.84 Total: -5.57 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -5.02 Total: 15.33 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -28.42 -8.31 -36.74 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519177259.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.189 kcal (2) G-P(sol) polarization free energy of solvation -28.425 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.736 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.452 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds