Wall clock time and date at job start Tue Mar 31 2020 16:47:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52992 * 109.47169 * 2 1 4 4 H 1.08995 * 109.47372 * 177.97187 * 3 2 1 5 5 C 1.50705 * 109.47008 * 57.97061 * 3 2 1 6 6 H 1.08003 * 119.99936 * 239.99564 * 5 3 2 7 7 C 1.37876 * 119.99715 * 60.00433 * 5 3 2 8 8 N 1.31517 * 120.00359 * 359.97438 * 7 5 3 9 9 Si 1.86805 * 119.99777 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47076 * 59.99679 * 9 7 5 11 11 H 1.48500 * 109.47057 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.46968 * 299.99429 * 9 7 5 13 13 N 1.46903 * 109.47412 * 297.97171 * 3 2 1 14 14 C 1.46893 * 110.99899 * 273.75118 * 13 3 2 15 15 C 1.50702 * 109.47345 * 174.93890 * 14 13 3 16 16 N 1.30972 * 126.43888 * 90.30453 * 15 14 13 17 17 C 1.35241 * 105.58176 * 180.10233 * 16 15 14 18 18 C 1.48345 * 126.41678 * 179.88827 * 17 16 15 19 19 C 1.39371 * 120.05514 * 359.70148 * 18 17 16 20 20 C 1.37949 * 120.02336 * 180.02562 * 19 18 17 21 21 C 1.38712 * 120.18436 * 0.02562 * 20 19 18 22 22 C 1.39414 * 120.01983 * 359.97438 * 21 20 19 23 23 C 1.38285 * 119.95155 * 0.02562 * 22 21 20 24 24 O 1.36535 * 108.61526 * 180.02562 * 22 21 20 25 25 C 1.43975 * 105.47089 * 17.30903 * 24 22 21 26 26 O 1.36482 * 131.37714 * 180.02562 * 21 20 19 27 27 N 1.30805 * 107.15962 * 359.61724 * 17 16 15 28 28 O 1.21285 * 110.08950 * 0.24110 * 27 17 16 29 29 H 1.09002 * 109.46951 * 294.44839 * 1 2 3 30 30 H 1.08995 * 109.47526 * 54.44615 * 1 2 3 31 31 H 1.09007 * 109.47500 * 174.45170 * 1 2 3 32 32 H 1.09008 * 109.46535 * 240.00206 * 2 1 3 33 33 H 1.09003 * 109.47234 * 120.00634 * 2 1 3 34 34 H 0.96997 * 120.00475 * 180.02562 * 8 7 5 35 35 H 1.00901 * 111.00195 * 149.79614 * 13 3 2 36 36 H 1.08992 * 109.47823 * 54.93549 * 14 13 3 37 37 H 1.09005 * 109.47232 * 294.93229 * 14 13 3 38 38 H 1.08000 * 119.99102 * 359.75715 * 19 18 17 39 39 H 1.08001 * 119.90745 * 180.02562 * 20 19 18 40 40 H 1.07998 * 120.03367 * 180.02562 * 23 22 21 41 41 H 1.08997 * 110.57352 * 91.39022 * 25 24 22 42 42 H 1.09002 * 110.56844 * 214.25564 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1293 1.4427 0.0364 5 6 1.4969 2.1672 1.2046 6 1 0.8799 3.0440 1.0744 7 6 1.7880 1.7110 2.4727 8 7 2.5391 0.6431 2.6312 9 14 1.1155 2.6098 3.9659 10 1 -0.3686 2.6101 3.9165 11 1 1.5691 1.9238 5.2023 12 1 1.6111 4.0096 3.9657 13 7 1.5908 2.1207 -1.2232 14 6 2.5278 1.8858 -2.3298 15 6 1.9736 2.4900 -3.5942 16 7 2.1796 3.7080 -4.0296 17 6 1.4881 3.8014 -5.1882 18 6 1.4011 4.9924 -6.0682 19 6 2.0693 6.1658 -5.7230 20 6 1.9874 7.2731 -6.5416 21 6 1.2406 7.2234 -7.7094 22 6 0.5703 6.0521 -8.0593 23 6 0.6501 4.9402 -7.2411 24 8 -0.0839 6.2604 -9.2395 25 6 0.5233 7.4328 -9.8136 26 8 1.0056 8.1633 -8.6707 27 7 0.9153 2.6429 -5.3902 28 8 1.1845 1.8816 -4.4852 29 1 -0.3633 0.4253 0.9355 30 1 -0.3634 0.5975 -0.8360 31 1 -0.3634 -1.0229 -0.0994 32 1 1.8932 -0.5139 -0.8901 33 1 1.8933 -0.5139 0.8899 34 1 2.7436 0.3220 3.5233 35 1 1.4615 3.1084 -1.0623 36 1 2.6643 0.8135 -2.4690 37 1 3.4877 2.3470 -2.0972 38 1 2.6478 6.2095 -4.8120 39 1 2.5063 8.1812 -6.2724 40 1 0.1317 4.0320 -7.5111 41 1 1.3504 7.1548 -10.4669 42 1 -0.2163 8.0192 -10.3588 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000519177259.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:47:21 Heat of formation + Delta-G solvation = 19.974409 kcal Electronic energy + Delta-G solvation = -26951.041181 eV Core-core repulsion = 22900.076559 eV Total energy + Delta-G solvation = -4050.964622 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -46.60857 -43.27131 -39.32967 -38.34601 -37.42347 -36.74202 -35.13900 -33.63624 -32.35932 -31.65777 -31.08930 -28.90341 -27.04995 -26.69408 -25.67841 -25.01434 -24.38087 -23.64673 -22.37628 -20.96257 -19.58395 -19.13902 -19.04627 -18.48767 -18.44436 -17.78651 -17.33829 -16.87617 -16.21631 -16.04186 -15.68243 -15.58613 -15.34923 -15.05217 -14.95493 -14.66900 -14.27414 -14.21945 -14.10407 -13.85497 -13.78011 -13.36246 -13.13847 -13.08626 -12.77348 -12.68670 -12.48340 -12.36798 -12.13217 -12.08621 -11.90409 -11.63762 -11.28236 -11.14275 -10.75852 -10.49596 -10.06035 -9.19533 -9.15454 -8.06131 -6.16494 -0.60233 0.01022 0.19048 1.20088 1.46639 1.48442 1.54370 1.60746 1.74694 2.21867 2.43660 2.46736 2.56114 2.84213 3.23953 3.24889 3.64430 3.73315 3.81545 3.92618 3.97703 4.08895 4.18316 4.27591 4.36744 4.46294 4.60534 4.69492 4.71952 4.82070 4.87086 4.88597 5.01183 5.04798 5.16589 5.20879 5.33815 5.42145 5.59698 5.75089 5.85151 5.92617 5.92916 6.31773 6.39422 6.68806 6.98677 7.03172 7.51273 8.98424 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.022200 B = 0.002162 C = 0.002048 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1260.965468 B =12946.452954 C =13665.827051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.102 4.102 3 C 0.226 3.774 4 H -0.012 1.012 5 C -0.524 4.524 6 H 0.055 0.945 7 C 0.023 3.977 8 N -0.911 5.911 9 Si 0.948 3.052 10 H -0.276 1.276 11 H -0.288 1.288 12 H -0.273 1.273 13 N -0.679 5.679 14 C 0.149 3.851 15 C 0.220 3.780 16 N -0.485 5.485 17 C 0.209 3.791 18 C -0.026 4.026 19 C -0.056 4.056 20 C -0.094 4.094 21 C 0.049 3.951 22 C 0.019 3.981 23 C -0.074 4.074 24 O -0.322 6.322 25 C 0.203 3.797 26 O -0.314 6.314 27 N -0.394 5.394 28 O 0.082 5.918 29 H 0.028 0.972 30 H 0.051 0.949 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.061 0.939 34 H 0.261 0.739 35 H 0.339 0.661 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.161 0.839 39 H 0.173 0.827 40 H 0.138 0.862 41 H 0.109 0.891 42 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.263 11.469 -22.338 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.141 4.141 3 C 0.119 3.881 4 H 0.005 0.995 5 C -0.563 4.563 6 H 0.073 0.927 7 C -0.177 4.177 8 N -0.550 5.550 9 Si 0.775 3.225 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.199 1.199 13 N -0.312 5.312 14 C 0.018 3.982 15 C -0.001 4.001 16 N -0.219 5.219 17 C -0.061 4.061 18 C -0.028 4.028 19 C -0.076 4.076 20 C -0.113 4.113 21 C 0.003 3.997 22 C -0.025 4.025 23 C -0.094 4.094 24 O -0.239 6.239 25 C 0.093 3.907 26 O -0.230 6.230 27 N -0.102 5.102 28 O 0.024 5.976 29 H 0.047 0.953 30 H 0.070 0.930 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.070 0.930 35 H 0.157 0.843 36 H 0.136 0.864 37 H 0.103 0.897 38 H 0.178 0.822 39 H 0.191 0.809 40 H 0.156 0.844 41 H 0.127 0.873 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -0.561 11.162 -23.185 25.738 hybrid contribution 0.278 0.582 1.187 1.351 sum -0.284 11.744 -21.998 24.938 Atomic orbital electron populations 1.21331 0.96584 0.98451 1.00450 1.21372 0.95888 0.97481 0.99313 1.18953 0.92332 0.92029 0.84796 0.99465 1.21355 1.31640 1.12057 0.91236 0.92664 1.25487 0.95380 0.95664 1.01157 1.69973 1.38117 1.23950 1.22946 0.85767 0.78720 0.78844 0.79202 1.20184 1.21321 1.19875 1.60594 1.47031 1.17091 1.06530 1.20521 0.93968 1.01944 0.81731 1.28988 0.89175 0.87045 0.94906 1.71992 1.23622 1.16883 1.09367 1.23930 0.95223 0.93887 0.93050 1.16951 1.02499 0.90388 0.92990 1.21151 0.97046 0.89692 0.99710 1.20285 0.98932 1.00752 0.91290 1.20209 0.98729 0.86649 0.94120 1.19506 0.97360 0.95280 0.90356 1.19854 0.99809 0.96907 0.92859 1.87376 1.56719 1.47748 1.32041 1.26234 0.98269 0.79191 0.87005 1.87358 1.81578 1.30637 1.23409 1.74873 1.21939 1.03154 1.10254 1.85278 1.50254 1.37513 1.24583 0.95270 0.93006 0.94737 0.94730 0.92088 0.92982 0.84305 0.86446 0.89689 0.82159 0.80916 0.84441 0.87337 0.81689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.63 9.46 71.98 0.68 -3.95 16 2 C -0.10 -4.49 5.57 30.59 0.17 -4.32 16 3 C 0.23 10.16 2.30 44.17 0.10 10.27 16 4 H -0.01 -0.59 7.84 -2.39 -0.02 -0.61 16 5 C -0.52 -26.37 7.34 25.60 0.19 -26.18 16 6 H 0.06 2.77 7.60 -2.91 -0.02 2.75 16 7 C 0.02 1.19 5.30 84.65 0.45 1.64 16 8 N -0.91 -49.12 11.34 21.45 0.24 -48.88 16 9 Si 0.95 41.78 29.54 68.60 2.03 43.81 16 10 H -0.28 -12.09 7.11 99.48 0.71 -11.39 16 11 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 12 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 13 N -0.68 -25.29 5.50 -499.49 -2.75 -28.03 16 14 C 0.15 4.48 6.08 85.56 0.52 5.00 16 15 C 0.22 6.63 8.05 88.36 0.71 7.34 16 16 N -0.48 -14.71 11.25 -302.45 -3.40 -18.12 16 17 C 0.21 6.20 7.80 137.25 1.07 7.27 16 18 C -0.03 -0.65 5.88 -20.04 -0.12 -0.77 16 19 C -0.06 -1.13 9.69 22.47 0.22 -0.91 16 20 C -0.09 -1.59 10.04 22.31 0.22 -1.36 16 21 C 0.05 0.94 7.15 22.67 0.16 1.11 16 22 C 0.02 0.42 7.14 22.56 0.16 0.58 16 23 C -0.07 -1.76 9.70 22.55 0.22 -1.54 16 24 O -0.32 -6.27 11.40 -76.46 -0.87 -7.14 16 25 C 0.20 2.28 8.89 113.37 1.01 3.29 16 26 O -0.31 -5.30 11.40 -75.84 -0.86 -6.17 16 27 N -0.39 -12.42 11.85 -59.07 -0.70 -13.12 16 28 O 0.08 2.57 11.29 74.59 0.84 3.41 16 29 H 0.03 1.32 7.37 -2.39 -0.02 1.31 16 30 H 0.05 2.09 7.50 -2.39 -0.02 2.07 16 31 H 0.03 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.03 1.35 7.43 -2.38 -0.02 1.33 16 33 H 0.06 3.06 6.13 -2.39 -0.01 3.05 16 34 H 0.26 13.61 8.31 -92.71 -0.77 12.84 16 35 H 0.34 12.85 8.24 -89.69 -0.74 12.11 16 36 H 0.12 3.23 7.40 -2.39 -0.02 3.21 16 37 H 0.09 2.41 8.14 -2.38 -0.02 2.39 16 38 H 0.16 2.98 7.87 -2.91 -0.02 2.96 16 39 H 0.17 1.88 8.06 -2.91 -0.02 1.85 16 40 H 0.14 3.34 7.86 -2.91 -0.02 3.32 16 41 H 0.11 0.71 8.14 -2.39 -0.02 0.70 16 42 H 0.17 0.69 8.14 -2.39 -0.02 0.67 16 Total: -1.00 -60.56 359.45 0.63 -59.93 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.34 Total: 16.85 kcal Atomic # 6 Polarization: -8.31 SS G_CDS: 5.76 Total: -2.54 kcal Atomic # 7 Polarization: -101.55 SS G_CDS: -6.61 Total: -108.15 kcal Atomic # 8 Polarization: -9.01 SS G_CDS: -0.89 Total: -9.90 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Total: -60.56 0.63 -59.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000519177259.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.906 kcal (2) G-P(sol) polarization free energy of solvation -60.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds