Wall clock time and date at job start Tue Mar 31 2020 16:15:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31136 * 126.55002 * 2 1 4 4 C 1.34491 * 105.60986 * 180.12311 * 3 2 1 5 5 C 1.50706 * 126.28708 * 179.90420 * 4 3 2 6 6 O 1.42900 * 109.47041 * 269.71240 * 5 4 3 7 7 C 1.35715 * 116.99990 * 179.97438 * 6 5 4 8 8 C 1.38994 * 119.91123 * 179.97438 * 7 6 5 9 9 C 1.37700 * 120.08436 * 180.02562 * 8 7 6 10 10 C 1.39736 * 119.91534 * 359.97438 * 9 8 7 11 11 C 1.47599 * 120.08934 * 179.97438 * 10 9 8 12 12 O 1.21587 * 119.99863 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00340 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00348 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47197 * 34.99139 * 14 13 11 16 16 C 1.53005 * 109.46437 * 274.99648 * 14 13 11 17 17 C 1.50701 * 109.47260 * 155.00133 * 14 13 11 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 14 13 19 19 C 1.37871 * 119.99694 * 180.27562 * 17 14 13 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 14 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 14 22 22 H 1.48494 * 109.47230 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47301 * 119.99669 * 21 19 17 24 24 H 1.48498 * 109.47430 * 239.99516 * 21 19 17 25 25 C 1.39726 * 119.82239 * 0.28031 * 10 9 8 26 26 C 1.37709 * 119.91136 * 359.46410 * 25 10 9 27 27 N 1.29946 * 107.43088 * 359.63770 * 4 3 2 28 28 O 1.21302 * 110.24707 * 0.23090 * 27 4 3 29 29 H 1.08995 * 109.47291 * 180.25441 * 1 2 3 30 30 H 1.09005 * 109.47057 * 300.25335 * 1 2 3 31 31 H 1.09001 * 109.46857 * 60.24749 * 1 2 3 32 32 H 1.09002 * 109.47283 * 149.71120 * 5 4 3 33 33 H 1.09001 * 109.46674 * 29.70958 * 5 4 3 34 34 H 1.07994 * 119.95672 * 0.02562 * 8 7 6 35 35 H 1.08004 * 120.04211 * 179.97438 * 9 8 7 36 36 H 0.97000 * 119.99698 * 359.97438 * 13 11 10 37 37 H 1.09004 * 109.46658 * 179.97438 * 16 14 13 38 38 H 1.08995 * 109.47438 * 299.99560 * 16 14 13 39 39 H 1.08996 * 109.47069 * 60.00420 * 16 14 13 40 40 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 41 41 H 1.08000 * 120.04532 * 179.72440 * 25 10 9 42 42 H 1.07995 * 119.95413 * 180.25876 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0535 0.0000 4 6 3.5441 0.5728 -0.0028 5 6 4.8112 1.3886 -0.0060 6 8 5.2122 1.6404 -1.3542 7 6 6.3433 2.3683 -1.5349 8 6 6.7891 2.6486 -2.8212 9 6 7.9365 3.3864 -3.0087 10 6 8.6527 3.8540 -1.9036 11 6 9.8834 4.6448 -2.1001 12 8 10.2751 4.8905 -3.2246 13 7 10.5731 5.0944 -1.0331 14 6 11.7943 5.8798 -1.2281 15 1 11.6859 6.5063 -2.1134 16 6 12.9836 4.9353 -1.4141 17 6 12.0291 6.7514 -0.0213 18 1 11.3375 6.7235 0.8077 19 6 13.1234 7.5890 0.0215 20 7 13.9654 7.6232 -0.9882 21 14 13.4102 8.6753 1.5140 22 1 12.3268 8.4514 2.5046 23 1 14.7199 8.3380 2.1274 24 1 13.4116 10.1003 1.0962 25 6 8.2041 3.5656 -0.6122 26 6 7.0528 2.8315 -0.4331 27 7 3.4645 -0.7242 0.0035 28 8 2.3029 -1.0736 0.0052 29 1 -0.3633 -1.0276 0.0046 30 1 -0.3633 0.5178 0.8877 31 1 -0.3633 0.5100 -0.8922 32 1 5.5983 0.8393 0.5107 33 1 4.6347 2.3359 0.5035 34 1 6.2348 2.2872 -3.6748 35 1 8.2825 3.6035 -4.0085 36 1 10.2604 4.8987 -0.1359 37 1 13.8922 5.5196 -1.5596 38 1 13.0920 4.3088 -0.5288 39 1 12.8138 4.3048 -2.2869 40 1 14.7350 8.2128 -0.9581 41 1 8.7573 3.9214 0.2445 42 1 6.7032 2.6117 0.5648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522117967.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:49 Heat of formation + Delta-G solvation = 23.596166 kcal Electronic energy + Delta-G solvation = -26324.936465 eV Core-core repulsion = 22274.128894 eV Total energy + Delta-G solvation = -4050.807570 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -46.15589 -40.50031 -39.06965 -37.22927 -36.31656 -34.80353 -34.19728 -32.53252 -31.25313 -30.53192 -29.61426 -28.94640 -28.06691 -25.26202 -24.30738 -23.51565 -23.00970 -21.82517 -20.91165 -19.52265 -18.94990 -18.41570 -18.07536 -17.63134 -16.52100 -16.23384 -15.88639 -15.30286 -15.11575 -14.91617 -14.58768 -14.18809 -14.05290 -13.99706 -13.70663 -13.69169 -13.32916 -12.95801 -12.88955 -12.56399 -12.40936 -12.25783 -12.12231 -11.72931 -11.60697 -11.28112 -11.09249 -11.00630 -10.94846 -10.72806 -10.47221 -10.30557 -10.24403 -9.14617 -9.13738 -9.03535 -8.56537 -8.37491 -7.88394 -6.12722 -4.22033 0.58110 1.00007 1.27629 1.46109 2.27723 2.67267 3.22797 3.23692 3.27632 3.31181 3.33706 3.51634 4.06249 4.15912 4.27097 4.37620 4.47098 4.58784 4.68739 4.70616 4.71749 4.85587 4.98702 5.19563 5.20796 5.22968 5.24769 5.40454 5.42332 5.58651 5.89076 6.03925 6.20196 6.45395 6.55739 6.83768 6.97572 7.06522 7.15305 7.44865 7.56276 7.60938 7.69347 7.91577 8.14539 8.64893 8.77477 9.10148 9.45477 10.93384 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.001890 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.048945 B =14812.155691 C =15582.462769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.181 3.819 3 N -0.470 5.470 4 C 0.169 3.831 5 C 0.154 3.846 6 O -0.309 6.309 7 C 0.142 3.858 8 C -0.156 4.156 9 C -0.024 4.024 10 C -0.154 4.154 11 C 0.544 3.456 12 O -0.553 6.553 13 N -0.703 5.703 14 C 0.263 3.737 15 H 0.050 0.950 16 C -0.147 4.147 17 C -0.533 4.533 18 H 0.061 0.939 19 C 0.066 3.934 20 N -0.883 5.883 21 Si 0.902 3.098 22 H -0.273 1.273 23 H -0.283 1.283 24 H -0.283 1.283 25 C -0.046 4.046 26 C -0.216 4.216 27 N -0.360 5.360 28 O 0.087 5.913 29 H 0.099 0.901 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.095 0.905 33 H 0.100 0.900 34 H 0.135 0.865 35 H 0.145 0.855 36 H 0.387 0.613 37 H 0.090 0.910 38 H 0.026 0.974 39 H 0.015 0.985 40 H 0.264 0.736 41 H 0.134 0.866 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.282 -16.216 4.152 31.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.040 4.040 3 N -0.204 5.204 4 C -0.104 4.104 5 C 0.077 3.923 6 O -0.221 6.221 7 C 0.097 3.903 8 C -0.174 4.174 9 C -0.043 4.043 10 C -0.158 4.158 11 C 0.330 3.670 12 O -0.433 6.433 13 N -0.350 5.350 14 C 0.161 3.839 15 H 0.068 0.932 16 C -0.205 4.205 17 C -0.572 4.572 18 H 0.080 0.920 19 C -0.137 4.137 20 N -0.520 5.520 21 Si 0.729 3.271 22 H -0.198 1.198 23 H -0.209 1.209 24 H -0.209 1.209 25 C -0.065 4.065 26 C -0.234 4.234 27 N -0.066 5.066 28 O 0.023 5.977 29 H 0.117 0.883 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.113 0.887 33 H 0.118 0.882 34 H 0.153 0.847 35 H 0.162 0.838 36 H 0.221 0.779 37 H 0.109 0.891 38 H 0.045 0.955 39 H 0.034 0.966 40 H 0.074 0.926 41 H 0.152 0.848 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -25.066 -16.054 3.169 29.935 hybrid contribution -0.018 0.480 1.502 1.576 sum -25.084 -15.574 4.670 29.892 Atomic orbital electron populations 1.20445 0.79781 1.05846 1.05966 1.28928 0.99066 0.80395 0.95575 1.71893 0.99959 1.28902 1.19686 1.25157 0.94547 0.88065 1.02595 1.20598 0.89150 0.98586 0.83937 1.86005 1.40386 1.68759 1.26960 1.19108 0.85236 0.91440 0.94546 1.20352 0.98683 1.03861 0.94525 1.21126 0.91564 0.92035 0.99593 1.20275 0.98371 1.03425 0.93711 1.18108 0.83181 0.80067 0.85634 1.90730 1.69937 1.59022 1.23624 1.46482 1.27717 1.53431 1.07385 1.18797 0.78471 0.88485 0.98130 0.93169 1.22075 1.02740 0.98656 0.97062 1.21239 1.09867 1.23189 1.02871 0.92035 1.24890 0.95586 0.96771 0.96487 1.69911 1.13776 1.37983 1.30334 0.86388 0.78105 0.80216 0.82343 1.19756 1.20878 1.20873 1.21188 0.94326 0.94222 0.96742 1.21117 0.98852 1.05614 0.97840 1.74690 0.97565 1.15451 1.18891 1.85332 1.11316 1.35862 1.65145 0.88259 0.87598 0.87595 0.88678 0.88190 0.84740 0.83777 0.77942 0.89107 0.95450 0.96560 0.92607 0.84840 0.85067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.08 10.51 36.01 0.38 0.30 16 2 C 0.18 1.22 8.51 -13.05 -0.11 1.11 16 3 N -0.47 -4.61 11.55 -9.87 -0.11 -4.72 16 4 C 0.17 1.78 7.85 -156.37 -1.23 0.56 16 5 C 0.15 1.45 5.36 36.01 0.19 1.64 16 6 O -0.31 -3.69 10.11 -18.85 -0.19 -3.88 16 7 C 0.14 1.76 6.70 -39.02 -0.26 1.49 16 8 C -0.16 -1.99 9.97 -39.50 -0.39 -2.39 16 9 C -0.02 -0.36 9.58 -39.22 -0.38 -0.73 16 10 C -0.15 -2.53 5.87 -104.96 -0.62 -3.14 16 11 C 0.54 11.37 7.73 -12.44 -0.10 11.27 16 12 O -0.55 -13.59 16.00 5.29 0.08 -13.51 16 13 N -0.70 -14.95 5.02 -55.95 -0.28 -15.23 16 14 C 0.26 6.77 2.56 -69.08 -0.18 6.59 16 15 H 0.05 1.49 7.58 -51.93 -0.39 1.09 16 16 C -0.15 -3.69 9.26 37.16 0.34 -3.35 16 17 C -0.53 -14.16 8.72 -34.44 -0.30 -14.46 16 18 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 19 C 0.07 1.78 5.31 -17.82 -0.09 1.68 16 20 N -0.88 -24.92 11.33 55.43 0.63 -24.29 16 21 Si 0.90 20.64 29.54 -169.99 -5.02 15.62 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 24 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 25 C -0.05 -0.61 9.53 -39.22 -0.37 -0.99 16 26 C -0.22 -2.48 9.01 -39.49 -0.36 -2.83 16 27 N -0.36 -3.89 12.16 30.90 0.38 -3.51 16 28 O 0.09 0.74 11.31 18.11 0.20 0.94 16 29 H 0.10 -0.08 8.14 -51.93 -0.42 -0.50 16 30 H 0.11 0.02 8.14 -51.93 -0.42 -0.40 16 31 H 0.11 0.06 8.14 -51.93 -0.42 -0.36 16 32 H 0.10 0.74 7.65 -51.93 -0.40 0.35 16 33 H 0.10 0.78 7.65 -51.93 -0.40 0.38 16 34 H 0.13 1.48 8.06 -52.49 -0.42 1.05 16 35 H 0.14 2.12 7.64 -52.48 -0.40 1.72 16 36 H 0.39 7.05 6.56 -40.82 -0.27 6.78 16 37 H 0.09 2.47 6.08 -51.93 -0.32 2.15 16 38 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 41 H 0.13 1.58 6.39 -52.49 -0.34 1.24 16 42 H 0.13 1.11 6.28 -52.49 -0.33 0.78 16 LS Contribution 365.46 15.07 5.51 5.51 Total: -1.00 -34.63 365.46 -7.19 -41.82 By element: Atomic # 1 Polarization: 9.42 SS G_CDS: -4.92 Total: 4.51 kcal Atomic # 6 Polarization: 0.22 SS G_CDS: -3.47 Total: -3.24 kcal Atomic # 7 Polarization: -48.37 SS G_CDS: 0.61 Total: -47.76 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: 0.10 Total: -16.45 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -34.63 -7.19 -41.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522117967.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.419 kcal (2) G-P(sol) polarization free energy of solvation -34.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.823 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.596 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds