Wall clock time and date at job start Tue Mar 31 2020 16:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31136 * 126.55002 * 2 1 4 4 C 1.34491 * 105.60986 * 180.12311 * 3 2 1 5 5 C 1.50706 * 126.28708 * 179.90420 * 4 3 2 6 6 O 1.42900 * 109.47041 * 269.71240 * 5 4 3 7 7 C 1.35715 * 116.99990 * 179.97438 * 6 5 4 8 8 C 1.38994 * 119.91123 * 179.97438 * 7 6 5 9 9 C 1.37700 * 120.08436 * 180.02562 * 8 7 6 10 10 C 1.39736 * 119.91534 * 359.97438 * 9 8 7 11 11 C 1.47599 * 120.08934 * 179.97438 * 10 9 8 12 12 O 1.21587 * 119.99863 * 0.02562 * 11 10 9 13 13 N 1.34776 * 120.00340 * 180.02562 * 11 10 9 14 14 C 1.46499 * 120.00348 * 180.02562 * 13 11 10 15 15 H 1.09000 * 109.47197 * 34.99139 * 14 13 11 16 16 C 1.53005 * 109.46437 * 274.99648 * 14 13 11 17 17 C 1.50701 * 109.47260 * 155.00133 * 14 13 11 18 18 H 1.08002 * 119.99761 * 359.97438 * 17 14 13 19 19 C 1.37871 * 119.99694 * 180.27562 * 17 14 13 20 20 N 1.31514 * 120.00482 * 359.71466 * 19 17 14 21 21 Si 1.86801 * 119.99746 * 179.72062 * 19 17 14 22 22 H 1.48494 * 109.47230 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47301 * 119.99669 * 21 19 17 24 24 H 1.48498 * 109.47430 * 239.99516 * 21 19 17 25 25 C 1.39726 * 119.82239 * 0.28031 * 10 9 8 26 26 C 1.37709 * 119.91136 * 359.46410 * 25 10 9 27 27 N 1.29946 * 107.43088 * 359.63770 * 4 3 2 28 28 O 1.21302 * 110.24707 * 0.23090 * 27 4 3 29 29 H 1.08995 * 109.47291 * 180.25441 * 1 2 3 30 30 H 1.09005 * 109.47057 * 300.25335 * 1 2 3 31 31 H 1.09001 * 109.46857 * 60.24749 * 1 2 3 32 32 H 1.09002 * 109.47283 * 149.71120 * 5 4 3 33 33 H 1.09001 * 109.46674 * 29.70958 * 5 4 3 34 34 H 1.07994 * 119.95672 * 0.02562 * 8 7 6 35 35 H 1.08004 * 120.04211 * 179.97438 * 9 8 7 36 36 H 0.97000 * 119.99698 * 359.97438 * 13 11 10 37 37 H 1.09004 * 109.46658 * 179.97438 * 16 14 13 38 38 H 1.08995 * 109.47438 * 299.99560 * 16 14 13 39 39 H 1.08996 * 109.47069 * 60.00420 * 16 14 13 40 40 H 0.96995 * 120.00207 * 179.97438 * 20 19 17 41 41 H 1.08000 * 120.04532 * 179.72440 * 25 10 9 42 42 H 1.07995 * 119.95413 * 180.25876 * 26 25 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2880 1.0535 0.0000 4 6 3.5441 0.5728 -0.0028 5 6 4.8112 1.3886 -0.0060 6 8 5.2122 1.6404 -1.3542 7 6 6.3433 2.3683 -1.5349 8 6 6.7891 2.6486 -2.8212 9 6 7.9365 3.3864 -3.0087 10 6 8.6527 3.8540 -1.9036 11 6 9.8834 4.6448 -2.1001 12 8 10.2751 4.8905 -3.2246 13 7 10.5731 5.0944 -1.0331 14 6 11.7943 5.8798 -1.2281 15 1 11.6859 6.5063 -2.1134 16 6 12.9836 4.9353 -1.4141 17 6 12.0291 6.7514 -0.0213 18 1 11.3375 6.7235 0.8077 19 6 13.1234 7.5890 0.0215 20 7 13.9654 7.6232 -0.9882 21 14 13.4102 8.6753 1.5140 22 1 12.3268 8.4514 2.5046 23 1 14.7199 8.3380 2.1274 24 1 13.4116 10.1003 1.0962 25 6 8.2041 3.5656 -0.6122 26 6 7.0528 2.8315 -0.4331 27 7 3.4645 -0.7242 0.0035 28 8 2.3029 -1.0736 0.0052 29 1 -0.3633 -1.0276 0.0046 30 1 -0.3633 0.5178 0.8877 31 1 -0.3633 0.5100 -0.8922 32 1 5.5983 0.8393 0.5107 33 1 4.6347 2.3359 0.5035 34 1 6.2348 2.2872 -3.6748 35 1 8.2825 3.6035 -4.0085 36 1 10.2604 4.8987 -0.1359 37 1 13.8922 5.5196 -1.5596 38 1 13.0920 4.3088 -0.5288 39 1 12.8138 4.3048 -2.2869 40 1 14.7350 8.2128 -0.9581 41 1 8.7573 3.9214 0.2445 42 1 6.7032 2.6117 0.5648 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522117967.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:15:48 Heat of formation + Delta-G solvation = -1.459897 kcal Electronic energy + Delta-G solvation = -26326.022977 eV Core-core repulsion = 22274.128894 eV Total energy + Delta-G solvation = -4051.894083 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -46.79913 -41.55756 -40.52669 -38.37424 -37.01731 -36.71755 -34.75233 -34.40915 -32.43124 -31.73783 -30.55316 -29.84034 -29.13195 -27.35145 -25.10227 -24.74093 -23.91998 -22.90470 -22.20175 -21.23500 -19.81861 -19.46016 -18.95104 -18.72958 -17.75530 -17.52006 -17.08434 -16.86698 -16.24918 -15.93975 -15.88573 -15.54031 -15.20251 -15.03220 -14.52925 -14.35038 -14.26938 -14.20710 -13.93649 -13.79140 -13.61640 -13.37431 -13.03147 -12.98511 -12.88430 -12.79268 -12.74843 -12.35475 -12.28847 -12.12903 -12.09841 -11.96011 -11.10667 -11.07082 -10.87521 -10.60931 -10.16001 -9.86365 -9.34883 -8.17767 -6.35477 -0.15706 -0.01663 0.26073 0.80642 1.44888 1.45746 1.57961 1.79947 1.90420 1.97425 2.33769 2.57944 2.66298 2.82645 2.86507 3.12983 3.58511 3.76732 3.80701 3.88072 3.95148 4.14308 4.20203 4.34382 4.44917 4.50488 4.62848 4.65954 4.73108 4.88104 4.90450 4.91695 4.99488 5.07908 5.13926 5.14661 5.32744 5.44390 5.49652 5.59486 5.67896 5.89763 6.08198 6.13170 6.71652 6.92036 7.00467 7.30862 7.49748 8.89067 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.023288 B = 0.001890 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1202.048945 B =14812.155691 C =15582.462769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.194 3.806 3 N -0.502 5.502 4 C 0.155 3.845 5 C 0.147 3.853 6 O -0.319 6.319 7 C 0.152 3.848 8 C -0.157 4.157 9 C -0.030 4.030 10 C -0.181 4.181 11 C 0.542 3.458 12 O -0.601 6.601 13 N -0.698 5.698 14 C 0.268 3.732 15 H 0.000 1.000 16 C -0.133 4.133 17 C -0.545 4.545 18 H 0.076 0.924 19 C 0.013 3.987 20 N -0.918 5.918 21 Si 0.975 3.025 22 H -0.258 1.258 23 H -0.279 1.279 24 H -0.285 1.285 25 C -0.039 4.039 26 C -0.204 4.204 27 N -0.385 5.385 28 O 0.084 5.916 29 H 0.124 0.876 30 H 0.122 0.878 31 H 0.118 0.882 32 H 0.113 0.887 33 H 0.119 0.881 34 H 0.151 0.849 35 H 0.134 0.866 36 H 0.404 0.596 37 H 0.068 0.932 38 H 0.042 0.958 39 H 0.010 0.990 40 H 0.266 0.734 41 H 0.151 0.849 42 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.025 -17.212 6.871 34.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.025 4.025 3 N -0.236 5.236 4 C -0.118 4.118 5 C 0.071 3.929 6 O -0.231 6.231 7 C 0.106 3.894 8 C -0.175 4.175 9 C -0.049 4.049 10 C -0.184 4.184 11 C 0.331 3.669 12 O -0.485 6.485 13 N -0.347 5.347 14 C 0.164 3.836 15 H 0.017 0.983 16 C -0.192 4.192 17 C -0.583 4.583 18 H 0.094 0.906 19 C -0.187 4.187 20 N -0.556 5.556 21 Si 0.799 3.201 22 H -0.182 1.182 23 H -0.204 1.204 24 H -0.211 1.211 25 C -0.057 4.057 26 C -0.223 4.223 27 N -0.093 5.093 28 O 0.022 5.978 29 H 0.143 0.857 30 H 0.141 0.859 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.137 0.863 34 H 0.168 0.832 35 H 0.152 0.848 36 H 0.241 0.759 37 H 0.087 0.913 38 H 0.061 0.939 39 H 0.030 0.970 40 H 0.075 0.925 41 H 0.168 0.832 42 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -27.861 -17.078 5.921 33.211 hybrid contribution 0.621 0.681 0.624 1.113 sum -27.240 -16.398 6.545 32.462 Atomic orbital electron populations 1.20833 0.76053 1.07981 1.07145 1.29943 1.00560 0.79224 0.92743 1.71906 1.00123 1.30130 1.21484 1.25404 0.95255 0.88227 1.02874 1.20902 0.89460 0.99731 0.82772 1.85994 1.39879 1.68296 1.28923 1.19204 0.85144 0.90465 0.94562 1.20448 0.97981 1.03338 0.95775 1.21072 0.92312 0.92653 0.98886 1.19927 0.97356 1.05360 0.95803 1.18792 0.84096 0.79442 0.84576 1.90693 1.71484 1.60904 1.25420 1.46190 1.26706 1.53141 1.08627 1.18423 0.80351 0.88615 0.96178 0.98256 1.21898 1.01645 0.98221 0.97449 1.21551 1.10230 1.23394 1.03151 0.90640 1.25829 0.95291 0.98150 0.99433 1.70063 1.14308 1.38789 1.32444 0.85254 0.78361 0.77718 0.78728 1.18181 1.20424 1.21073 1.21336 0.94865 0.93824 0.95710 1.21427 0.97496 1.03961 0.99368 1.74667 0.98791 1.15829 1.20014 1.85295 1.10991 1.36318 1.65234 0.85730 0.85946 0.86412 0.86913 0.86347 0.83162 0.84828 0.75941 0.91348 0.93904 0.97041 0.92530 0.83187 0.81343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 0.03 10.51 71.24 0.75 0.77 16 2 C 0.19 2.23 8.51 88.38 0.75 2.98 16 3 N -0.50 -8.96 11.55 -303.20 -3.50 -12.46 16 4 C 0.15 3.01 7.85 138.47 1.09 4.09 16 5 C 0.15 2.38 5.36 71.24 0.38 2.76 16 6 O -0.32 -6.84 10.11 -90.36 -0.91 -7.75 16 7 C 0.15 3.39 6.70 22.63 0.15 3.54 16 8 C -0.16 -3.83 9.97 22.32 0.22 -3.61 16 9 C -0.03 -0.90 9.58 22.50 0.22 -0.68 16 10 C -0.18 -5.91 5.87 -20.09 -0.12 -6.03 16 11 C 0.54 23.37 7.73 86.71 0.67 24.04 16 12 O -0.60 -31.31 16.00 -3.99 -0.06 -31.38 16 13 N -0.70 -30.12 5.02 -449.20 -2.25 -32.37 16 14 C 0.27 14.23 2.56 44.25 0.11 14.35 16 15 H 0.00 -0.03 7.58 -2.39 -0.02 -0.05 16 16 C -0.13 -6.92 9.26 71.98 0.67 -6.26 16 17 C -0.55 -29.00 8.72 25.60 0.22 -28.78 16 18 H 0.08 3.72 7.74 -2.91 -0.02 3.69 16 19 C 0.01 0.70 5.31 84.65 0.45 1.15 16 20 N -0.92 -53.04 11.33 21.45 0.24 -52.80 16 21 Si 0.97 41.99 29.54 68.60 2.03 44.01 16 22 H -0.26 -10.41 7.11 99.48 0.71 -9.70 16 23 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 24 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 25 C -0.04 -0.95 9.53 22.50 0.21 -0.74 16 26 C -0.20 -4.01 9.01 22.33 0.20 -3.81 16 27 N -0.39 -7.83 12.16 -60.33 -0.73 -8.56 16 28 O 0.08 1.31 11.31 74.85 0.85 2.15 16 29 H 0.12 -0.65 8.14 -2.39 -0.02 -0.67 16 30 H 0.12 -0.36 8.14 -2.38 -0.02 -0.38 16 31 H 0.12 -0.23 8.14 -2.39 -0.02 -0.25 16 32 H 0.11 1.40 7.65 -2.39 -0.02 1.38 16 33 H 0.12 1.45 7.65 -2.39 -0.02 1.43 16 34 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.13 4.16 7.64 -2.91 -0.02 4.14 16 36 H 0.40 14.37 6.56 -92.71 -0.61 13.76 16 37 H 0.07 3.86 6.08 -2.38 -0.01 3.84 16 38 H 0.04 2.02 8.14 -2.39 -0.02 2.00 16 39 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.27 14.46 8.31 -92.71 -0.77 13.69 16 41 H 0.15 3.12 6.39 -2.91 -0.02 3.10 16 42 H 0.17 2.04 6.28 -2.91 -0.02 2.02 16 Total: -1.00 -78.46 365.46 2.10 -76.36 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: 0.47 Total: 19.01 kcal Atomic # 6 Polarization: -2.20 SS G_CDS: 5.98 Total: 3.78 kcal Atomic # 7 Polarization: -99.95 SS G_CDS: -6.25 Total: -106.20 kcal Atomic # 8 Polarization: -36.85 SS G_CDS: -0.13 Total: -36.98 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 2.03 Total: 44.01 kcal Total: -78.46 2.10 -76.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522117967.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.904 kcal (2) G-P(sol) polarization free energy of solvation -78.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds