Wall clock time and date at job start Tue Mar 31 2020 16:54:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.46861 * 2 1 4 4 N 1.46497 * 109.47427 * 120.00036 * 2 1 3 5 5 C 1.46495 * 120.00432 * 305.17284 * 4 2 1 6 6 C 1.50705 * 109.46754 * 269.99903 * 5 4 2 7 7 H 1.07990 * 120.00198 * 359.97438 * 6 5 4 8 8 C 1.37879 * 119.99503 * 179.97438 * 6 5 4 9 9 N 1.31508 * 120.00373 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 119.99732 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.46801 * 60.00463 * 10 8 6 12 12 H 1.48500 * 109.47255 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47354 * 300.00839 * 10 8 6 14 14 C 1.34781 * 119.99676 * 125.16634 * 4 2 1 15 15 O 1.21574 * 120.00003 * 185.81162 * 14 4 2 16 16 C 1.47656 * 119.99968 * 5.81745 * 14 4 2 17 17 C 1.39873 * 120.03564 * 224.65554 * 16 14 4 18 18 C 1.37526 * 120.09490 * 179.74781 * 17 16 14 19 19 C 1.39335 * 120.24886 * 0.25034 * 18 17 16 20 20 N 1.38871 * 119.50809 * 180.02562 * 19 18 17 21 21 H 0.97005 * 119.90551 * 0.02733 * 20 19 18 22 22 C 1.34809 * 120.19833 * 180.02562 * 20 19 18 23 23 O 1.21447 * 120.32691 * 180.02562 * 22 20 19 24 24 C 1.49188 * 119.35046 * 0.02562 * 22 20 19 25 25 O 1.21456 * 120.35906 * 180.02562 * 24 22 20 26 26 N 1.34851 * 119.28127 * 0.02562 * 24 22 20 27 27 H 0.97005 * 119.97055 * 180.02562 * 26 24 22 28 28 C 1.39305 * 120.05721 * 359.97438 * 26 24 22 29 29 C 1.38691 * 119.57212 * 180.02562 * 28 26 24 30 30 H 1.09006 * 109.47167 * 299.99650 * 1 2 3 31 31 H 1.09001 * 109.47696 * 59.99753 * 1 2 3 32 32 H 1.09001 * 109.47230 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46899 * 240.00668 * 2 1 3 34 34 H 1.09002 * 109.46838 * 179.97438 * 3 2 1 35 35 H 1.08997 * 109.47507 * 299.99924 * 3 2 1 36 36 H 1.09000 * 109.46818 * 60.00619 * 3 2 1 37 37 H 1.09004 * 109.47360 * 29.99165 * 5 4 2 38 38 H 1.09000 * 109.47566 * 149.99907 * 5 4 2 39 39 H 0.97002 * 120.00373 * 179.97438 * 9 8 6 40 40 H 1.07993 * 119.95469 * 0.02562 * 17 16 14 41 41 H 1.07999 * 119.87324 * 180.28272 * 18 17 16 42 42 H 1.07996 * 120.03485 * 359.97179 * 29 28 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 1.5736 -0.2597 2.5237 6 6 2.5162 0.7905 3.0528 7 1 3.3620 1.1051 2.4597 8 6 2.2985 1.3496 4.2942 9 7 1.2687 0.9662 5.0167 10 14 3.4671 2.6508 4.9504 11 1 3.4785 3.8156 4.0294 12 1 3.0163 3.0877 6.2962 13 1 4.8359 2.0832 5.0475 14 6 2.8769 -1.7226 1.0751 15 8 3.1999 -2.3628 2.0567 16 6 3.4250 -2.0754 -0.2498 17 6 3.4798 -3.4142 -0.6509 18 6 3.9854 -3.7438 -1.8867 19 6 4.4501 -2.7479 -2.7432 20 7 4.9570 -3.0980 -3.9878 21 1 4.9846 -4.0304 -4.2540 22 6 5.4109 -2.1458 -4.8274 23 8 5.8542 -2.4493 -5.9165 24 6 5.3633 -0.7157 -4.4054 25 8 5.7669 0.1571 -5.1474 26 7 4.8673 -0.4025 -3.1911 27 1 4.8312 0.5243 -2.9067 28 6 4.4056 -1.4085 -2.3453 29 6 3.8969 -1.0749 -1.0989 30 1 -0.3634 0.5138 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5137 -0.8901 34 1 3.1299 1.4426 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8901 37 1 0.5687 0.1566 2.4529 38 1 1.5659 -1.1147 3.1997 39 1 1.1157 1.3593 5.8903 40 1 3.1205 -4.1899 0.0090 41 1 4.0217 -4.7783 -2.1945 42 1 3.8608 -0.0411 -0.7888 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000523281326.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:21 Heat of formation + Delta-G solvation = -62.988541 kcal Electronic energy + Delta-G solvation = -28562.000201 eV Core-core repulsion = 24507.438036 eV Total energy + Delta-G solvation = -4054.562165 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.13308 -40.13790 -38.87156 -38.76612 -36.25984 -35.84628 -35.28923 -32.92961 -31.03601 -30.77248 -29.82142 -27.40877 -26.92170 -26.10460 -24.48053 -23.41100 -22.82723 -21.53802 -19.85612 -19.54526 -18.60407 -18.34595 -17.72229 -16.85295 -16.71098 -16.52735 -16.01257 -15.64228 -15.15231 -14.89095 -14.57175 -14.50958 -14.45272 -14.03298 -13.78888 -13.59990 -13.42929 -12.95702 -12.67288 -12.31630 -12.11290 -11.84025 -11.75360 -11.62583 -11.54747 -11.40649 -11.08825 -10.99826 -10.91752 -10.63536 -10.48551 -10.42824 -10.12581 -9.67212 -9.25093 -8.85774 -8.49310 -8.20210 -7.79713 -6.11478 -4.15861 0.39811 0.64959 1.18884 1.97413 2.44293 2.49684 3.13394 3.26046 3.31870 3.34027 3.39426 3.58954 3.73145 4.09977 4.37107 4.50079 4.78127 4.89072 4.99034 5.14424 5.18896 5.22712 5.28257 5.44892 5.53927 5.62977 5.75305 5.90878 5.99128 6.06320 6.13772 6.14700 6.19632 6.22125 6.25142 6.49122 6.60783 6.81134 6.90511 7.00239 7.36488 7.40599 7.42594 7.84252 8.14744 8.25593 8.75988 8.92069 9.48694 10.96528 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.016802 B = 0.003333 C = 0.003139 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1666.024115 B = 8398.475029 C = 8918.694279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.124 3.876 3 C -0.164 4.164 4 N -0.582 5.582 5 C 0.244 3.756 6 C -0.525 4.525 7 H 0.058 0.942 8 C 0.063 3.937 9 N -0.893 5.893 10 Si 0.895 3.105 11 H -0.277 1.277 12 H -0.287 1.287 13 H -0.277 1.277 14 C 0.547 3.453 15 O -0.530 6.530 16 C -0.095 4.095 17 C -0.056 4.056 18 C -0.124 4.124 19 C 0.125 3.875 20 N -0.630 5.630 21 H 0.422 0.578 22 C 0.509 3.491 23 O -0.474 6.474 24 C 0.509 3.491 25 O -0.474 6.474 26 N -0.629 5.629 27 H 0.424 0.576 28 C 0.109 3.891 29 C -0.091 4.091 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.051 0.949 35 H 0.052 0.948 36 H 0.086 0.914 37 H 0.038 0.962 38 H 0.045 0.955 39 H 0.264 0.736 40 H 0.144 0.856 41 H 0.143 0.857 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.276 -6.803 -15.563 17.033 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.020 3.980 3 C -0.222 4.222 4 N -0.312 5.312 5 C 0.125 3.875 6 C -0.564 4.564 7 H 0.077 0.923 8 C -0.140 4.140 9 N -0.532 5.532 10 Si 0.722 3.278 11 H -0.202 1.202 12 H -0.212 1.212 13 H -0.202 1.202 14 C 0.332 3.668 15 O -0.408 6.408 16 C -0.100 4.100 17 C -0.077 4.077 18 C -0.145 4.145 19 C 0.026 3.974 20 N -0.278 5.278 21 H 0.262 0.738 22 C 0.291 3.709 23 O -0.344 6.344 24 C 0.290 3.710 25 O -0.343 6.343 26 N -0.279 5.279 27 H 0.265 0.735 28 C 0.010 3.990 29 C -0.112 4.112 30 H 0.090 0.910 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.099 0.901 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.056 0.944 38 H 0.063 0.937 39 H 0.074 0.926 40 H 0.162 0.838 41 H 0.161 0.839 42 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.894 -6.690 -16.076 17.515 hybrid contribution 0.609 0.825 0.578 1.177 sum 2.503 -5.865 -15.498 16.759 Atomic orbital electron populations 1.22136 0.95117 1.02027 1.02645 1.21241 0.94698 0.93874 0.88221 1.22269 1.00781 0.96082 1.03033 1.48294 1.43569 1.30252 1.09128 1.19340 0.95397 0.95946 0.76777 1.21370 1.11364 1.21470 1.02212 0.92349 1.24911 0.95459 0.97082 0.96502 1.69908 1.28247 1.42939 1.12068 0.86614 0.81368 0.81645 0.78127 1.20245 1.21209 1.20212 1.18002 0.80286 0.81269 0.87217 1.90799 1.59533 1.51815 1.38625 1.20131 1.00842 0.93551 0.95456 1.21043 0.96300 0.95441 0.94866 1.20585 1.01904 0.98143 0.93824 1.17454 1.01429 0.92018 0.86512 1.43604 1.58209 1.11591 1.14446 0.73782 1.20177 0.79254 0.86414 0.85070 1.90905 1.42301 1.81225 1.19944 1.20092 0.79308 0.89860 0.81724 1.90916 1.44047 1.47918 1.51453 1.43697 1.58278 1.10895 1.15013 0.73525 1.17182 1.03380 0.85986 0.92422 1.21130 0.98327 1.01199 0.90571 0.90994 0.92211 0.92739 0.90137 0.92956 0.92884 0.89532 0.94364 0.93727 0.92614 0.83792 0.83888 0.83143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.07 37.16 0.34 -1.79 16 2 C 0.12 1.75 2.40 -67.93 -0.16 1.58 16 3 C -0.16 -2.26 8.22 37.16 0.31 -1.95 16 4 N -0.58 -10.78 2.39 -168.65 -0.40 -11.19 16 5 C 0.24 5.76 4.77 -5.19 -0.02 5.73 16 6 C -0.53 -13.50 7.85 -34.44 -0.27 -13.77 16 7 H 0.06 1.48 7.59 -52.49 -0.40 1.08 16 8 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 9 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 10 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 13 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 14 C 0.55 10.08 7.23 -12.41 -0.09 9.99 16 15 O -0.53 -12.15 16.53 5.30 0.09 -12.06 16 16 C -0.09 -1.25 4.93 -104.99 -0.52 -1.76 16 17 C -0.06 -0.58 9.66 -39.23 -0.38 -0.96 16 18 C -0.12 -0.92 9.83 -39.43 -0.39 -1.31 16 19 C 0.13 1.05 6.62 -83.68 -0.55 0.49 16 20 N -0.63 -4.87 5.37 -10.23 -0.05 -4.93 16 21 H 0.42 2.14 8.78 -40.82 -0.36 1.78 16 22 C 0.51 5.63 8.00 -11.69 -0.09 5.54 16 23 O -0.47 -6.68 17.80 -10.84 -0.19 -6.87 16 24 C 0.51 5.88 8.01 -11.67 -0.09 5.79 16 25 O -0.47 -6.98 17.81 -10.85 -0.19 -7.18 16 26 N -0.63 -5.73 5.39 -10.27 -0.06 -5.79 16 27 H 0.42 3.14 8.79 -40.82 -0.36 2.78 16 28 C 0.11 1.03 6.61 -83.71 -0.55 0.47 16 29 C -0.09 -0.99 7.22 -38.96 -0.28 -1.27 16 30 H 0.07 1.10 6.52 -51.93 -0.34 0.76 16 31 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.94 4.80 -51.93 -0.25 0.70 16 34 H 0.05 0.70 6.52 -51.93 -0.34 0.36 16 35 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.09 1.48 6.93 -51.93 -0.36 1.12 16 37 H 0.04 0.91 6.17 -51.93 -0.32 0.59 16 38 H 0.04 1.22 7.35 -51.93 -0.38 0.84 16 39 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 40 H 0.14 1.43 8.06 -52.49 -0.42 1.01 16 41 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 42 H 0.15 1.62 5.10 -52.49 -0.27 1.35 16 LS Contribution 352.72 15.07 5.32 5.32 Total: -1.00 -33.89 352.72 -7.26 -41.15 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -4.62 Total: 1.87 kcal Atomic # 6 Polarization: 11.22 SS G_CDS: -2.86 Total: 8.35 kcal Atomic # 7 Polarization: -46.47 SS G_CDS: 0.22 Total: -46.25 kcal Atomic # 8 Polarization: -25.81 SS G_CDS: -0.30 Total: -26.10 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -33.89 -7.26 -41.15 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000523281326.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.836 kcal (2) G-P(sol) polarization free energy of solvation -33.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.153 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds